Strain Fitness in Serratia liquefaciens MT49 around IAI46_09950

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09940 and IAI46_09945 are separated by 392 nucleotidesIAI46_09945 and IAI46_09950 are separated by 431 nucleotidesIAI46_09950 and IAI46_09955 are separated by 127 nucleotides IAI46_09940: IAI46_09940 - tRNA-Ser, at 2,102,632 to 2,102,721 _09940 IAI46_09945: IAI46_09945 - tRNA-Ser, at 2,103,114 to 2,103,203 _09945 IAI46_09950: IAI46_09950 - peptide MFS transporter, at 2,103,635 to 2,105,119 _09950 IAI46_09955: IAI46_09955 - glyoxylate/hydroxypyruvate reductase GhrA, at 2,105,247 to 2,106,188 _09955 Position (kb) 2103 2104 2105 2106Strain fitness (log2 ratio) -2 -1 0 1 2at 2102.762 kb on - strandat 2102.762 kb on - strandat 2102.762 kb on - strandat 2102.764 kb on + strandat 2102.765 kb on - strandat 2102.765 kb on - strandat 2102.765 kb on - strandat 2102.765 kb on - strandat 2102.767 kb on - strandat 2102.767 kb on - strandat 2103.045 kb on - strandat 2103.064 kb on + strandat 2103.246 kb on - strandat 2103.251 kb on - strandat 2103.288 kb on + strandat 2103.289 kb on - strandat 2103.307 kb on - strandat 2103.433 kb on + strandat 2103.434 kb on - strandat 2103.435 kb on + strandat 2103.436 kb on - strandat 2103.455 kb on - strandat 2103.455 kb on - strandat 2103.474 kb on + strandat 2103.486 kb on - strandat 2103.489 kb on - strandat 2103.489 kb on - strandat 2103.508 kb on + strandat 2103.509 kb on - strandat 2103.606 kb on - strandat 2103.819 kb on + strand, within IAI46_09950at 2103.819 kb on + strand, within IAI46_09950at 2103.820 kb on - strand, within IAI46_09950at 2103.837 kb on - strand, within IAI46_09950at 2103.848 kb on - strand, within IAI46_09950at 2104.018 kb on + strand, within IAI46_09950at 2104.021 kb on + strand, within IAI46_09950at 2104.021 kb on + strand, within IAI46_09950at 2104.021 kb on + strand, within IAI46_09950at 2104.022 kb on - strand, within IAI46_09950at 2104.042 kb on + strand, within IAI46_09950at 2104.085 kb on + strand, within IAI46_09950at 2104.477 kb on - strand, within IAI46_09950at 2104.503 kb on - strand, within IAI46_09950at 2104.547 kb on - strand, within IAI46_09950at 2104.604 kb on - strand, within IAI46_09950at 2104.943 kb on + strand, within IAI46_09950at 2104.944 kb on - strand, within IAI46_09950at 2104.944 kb on - strand, within IAI46_09950at 2105.176 kb on - strandat 2105.223 kb on + strandat 2105.368 kb on - strand, within IAI46_09955at 2105.554 kb on - strand, within IAI46_09955at 2105.554 kb on - strand, within IAI46_09955at 2105.561 kb on + strand, within IAI46_09955at 2105.562 kb on - strand, within IAI46_09955at 2105.565 kb on + strand, within IAI46_09955at 2105.565 kb on + strand, within IAI46_09955at 2105.566 kb on - strand, within IAI46_09955at 2105.566 kb on - strand, within IAI46_09955at 2105.598 kb on + strand, within IAI46_09955at 2105.850 kb on - strand, within IAI46_09955at 2105.867 kb on + strand, within IAI46_09955at 2105.868 kb on - strand, within IAI46_09955at 2105.956 kb on + strand, within IAI46_09955at 2105.994 kb on - strand, within IAI46_09955at 2106.075 kb on - strand, within IAI46_09955

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,102,762 - -0.4
2,102,762 - -0.4
2,102,762 - +0.7
2,102,764 + +0.4
2,102,765 - -0.8
2,102,765 - -0.2
2,102,765 - -0.5
2,102,765 - -0.2
2,102,767 - +1.6
2,102,767 - -0.3
2,103,045 - +1.0
2,103,064 + +0.6
2,103,246 - +0.0
2,103,251 - -0.9
2,103,288 + +0.1
2,103,289 - +0.6
2,103,307 - +2.1
2,103,433 + -0.2
2,103,434 - +0.5
2,103,435 + -0.2
2,103,436 - -0.3
2,103,455 - +0.2
2,103,455 - -0.4
2,103,474 + -0.2
2,103,486 - +1.0
2,103,489 - -0.2
2,103,489 - +0.4
2,103,508 + +0.6
2,103,509 - -0.7
2,103,606 - -0.4
2,103,819 + IAI46_09950 0.12 -0.1
2,103,819 + IAI46_09950 0.12 -1.2
2,103,820 - IAI46_09950 0.12 -1.4
2,103,837 - IAI46_09950 0.14 -1.2
2,103,848 - IAI46_09950 0.14 +0.2
2,104,018 + IAI46_09950 0.26 +0.6
2,104,021 + IAI46_09950 0.26 -0.4
2,104,021 + IAI46_09950 0.26 -0.6
2,104,021 + IAI46_09950 0.26 -0.5
2,104,022 - IAI46_09950 0.26 +1.1
2,104,042 + IAI46_09950 0.27 +0.1
2,104,085 + IAI46_09950 0.30 +0.2
2,104,477 - IAI46_09950 0.57 +0.5
2,104,503 - IAI46_09950 0.58 +1.0
2,104,547 - IAI46_09950 0.61 -0.3
2,104,604 - IAI46_09950 0.65 -0.6
2,104,943 + IAI46_09950 0.88 -0.5
2,104,944 - IAI46_09950 0.88 -1.1
2,104,944 - IAI46_09950 0.88 +1.4
2,105,176 - +1.4
2,105,223 + -0.6
2,105,368 - IAI46_09955 0.13 -1.8
2,105,554 - IAI46_09955 0.33 -2.0
2,105,554 - IAI46_09955 0.33 -0.9
2,105,561 + IAI46_09955 0.33 -0.9
2,105,562 - IAI46_09955 0.33 -0.3
2,105,565 + IAI46_09955 0.34 +0.8
2,105,565 + IAI46_09955 0.34 -1.8
2,105,566 - IAI46_09955 0.34 -0.3
2,105,566 - IAI46_09955 0.34 +1.6
2,105,598 + IAI46_09955 0.37 +0.2
2,105,850 - IAI46_09955 0.64 -1.7
2,105,867 + IAI46_09955 0.66 +1.5
2,105,868 - IAI46_09955 0.66 +0.1
2,105,956 + IAI46_09955 0.75 -0.0
2,105,994 - IAI46_09955 0.79 -0.0
2,106,075 - IAI46_09955 0.88 +1.2

Or see this region's nucleotide sequence