Strain Fitness in Serratia liquefaciens MT49 around IAI46_09675

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09665 and IAI46_09670 are separated by 199 nucleotidesIAI46_09670 and IAI46_09675 are separated by 251 nucleotidesIAI46_09675 and IAI46_09680 are separated by 454 nucleotides IAI46_09665: IAI46_09665 - multidrug efflux MFS transporter MdtG, at 2,049,839 to 2,051,077 _09665 IAI46_09670: IAI46_09670 - hypothetical protein, at 2,051,277 to 2,051,561 _09670 IAI46_09675: IAI46_09675 - LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee, at 2,051,813 to 2,052,733 _09675 IAI46_09680: IAI46_09680 - NADH:flavin oxidoreductase/NADH oxidase, at 2,053,188 to 2,054,285 _09680 Position (kb) 2051 2052 2053Strain fitness (log2 ratio) -2 -1 0 1at 2050.961 kb on + strandat 2050.962 kb on - strandat 2050.966 kb on - strandat 2051.169 kb on + strandat 2051.170 kb on - strandat 2051.170 kb on - strandat 2051.171 kb on + strandat 2051.278 kb on + strandat 2051.278 kb on + strandat 2051.278 kb on + strandat 2051.278 kb on + strandat 2051.325 kb on + strand, within IAI46_09670at 2051.325 kb on + strand, within IAI46_09670at 2051.334 kb on + strand, within IAI46_09670at 2051.342 kb on - strand, within IAI46_09670at 2051.401 kb on - strand, within IAI46_09670at 2051.457 kb on - strand, within IAI46_09670at 2051.539 kb on + strandat 2051.539 kb on + strandat 2051.540 kb on - strandat 2051.557 kb on + strandat 2051.558 kb on - strandat 2051.558 kb on - strandat 2051.562 kb on - strandat 2051.562 kb on - strandat 2051.591 kb on + strandat 2051.633 kb on - strandat 2051.672 kb on - strandat 2051.678 kb on - strandat 2051.678 kb on - strandat 2051.683 kb on + strandat 2051.683 kb on + strandat 2051.687 kb on + strandat 2051.687 kb on + strandat 2051.694 kb on + strandat 2051.712 kb on - strandat 2051.725 kb on + strandat 2051.783 kb on - strandat 2051.787 kb on + strandat 2052.784 kb on - strandat 2052.833 kb on + strandat 2052.843 kb on + strandat 2052.886 kb on - strandat 2052.979 kb on + strandat 2053.007 kb on + strandat 2053.007 kb on + strandat 2053.008 kb on - strandat 2053.008 kb on - strandat 2053.008 kb on - strandat 2053.024 kb on + strandat 2053.127 kb on + strandat 2053.128 kb on - strandat 2053.128 kb on - strandat 2053.215 kb on + strandat 2053.303 kb on + strand, within IAI46_09680at 2053.303 kb on + strand, within IAI46_09680at 2053.304 kb on - strand, within IAI46_09680at 2053.304 kb on - strand, within IAI46_09680at 2053.441 kb on - strand, within IAI46_09680at 2053.595 kb on + strand, within IAI46_09680at 2053.645 kb on + strand, within IAI46_09680at 2053.700 kb on + strand, within IAI46_09680

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,050,961 + +0.0
2,050,962 - +1.2
2,050,966 - +0.7
2,051,169 + +0.7
2,051,170 - +1.4
2,051,170 - -1.1
2,051,171 + -0.2
2,051,278 + +0.7
2,051,278 + -0.9
2,051,278 + -0.5
2,051,278 + -1.8
2,051,325 + IAI46_09670 0.17 +1.1
2,051,325 + IAI46_09670 0.17 -0.9
2,051,334 + IAI46_09670 0.20 +0.4
2,051,342 - IAI46_09670 0.23 -0.2
2,051,401 - IAI46_09670 0.44 -0.1
2,051,457 - IAI46_09670 0.63 +0.2
2,051,539 + -0.5
2,051,539 + +0.1
2,051,540 - -0.6
2,051,557 + -0.1
2,051,558 - -0.8
2,051,558 - -0.2
2,051,562 - -1.2
2,051,562 - -0.8
2,051,591 + -1.7
2,051,633 - -2.5
2,051,672 - -1.5
2,051,678 - +0.6
2,051,678 - +0.7
2,051,683 + +0.2
2,051,683 + +1.2
2,051,687 + +0.5
2,051,687 + +0.6
2,051,694 + +1.3
2,051,712 - -0.7
2,051,725 + -0.4
2,051,783 - -0.4
2,051,787 + +1.3
2,052,784 - -1.7
2,052,833 + +0.2
2,052,843 + +1.2
2,052,886 - +0.1
2,052,979 + +0.6
2,053,007 + -0.8
2,053,007 + -1.0
2,053,008 - +1.1
2,053,008 - -0.0
2,053,008 - +0.1
2,053,024 + +0.0
2,053,127 + -0.2
2,053,128 - +0.2
2,053,128 - +0.6
2,053,215 + +0.5
2,053,303 + IAI46_09680 0.10 -0.5
2,053,303 + IAI46_09680 0.10 -0.2
2,053,304 - IAI46_09680 0.11 +0.4
2,053,304 - IAI46_09680 0.11 +0.4
2,053,441 - IAI46_09680 0.23 -1.0
2,053,595 + IAI46_09680 0.37 +0.1
2,053,645 + IAI46_09680 0.42 -0.0
2,053,700 + IAI46_09680 0.47 -0.5

Or see this region's nucleotide sequence