Strain Fitness in Serratia liquefaciens MT49 around IAI46_08455

Experiment: dichromate 20 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_08450 and IAI46_08455 are separated by 145 nucleotidesIAI46_08455 and IAI46_08460 are separated by 36 nucleotides IAI46_08450: IAI46_08450 - DUF2867 domain-containing protein, at 1,796,113 to 1,797,552 _08450 IAI46_08455: IAI46_08455 - DUF1294 domain-containing protein, at 1,797,698 to 1,798,045 _08455 IAI46_08460: IAI46_08460 - low-specificity L-threonine aldolase, at 1,798,082 to 1,799,098 _08460 Position (kb) 1797 1798 1799Strain fitness (log2 ratio) -2 -1 0 1at 1796.909 kb on + strand, within IAI46_08450at 1796.910 kb on - strand, within IAI46_08450at 1796.919 kb on - strand, within IAI46_08450at 1796.919 kb on - strand, within IAI46_08450at 1796.984 kb on + strand, within IAI46_08450at 1796.984 kb on + strand, within IAI46_08450at 1796.985 kb on - strand, within IAI46_08450at 1796.985 kb on - strand, within IAI46_08450at 1797.062 kb on + strand, within IAI46_08450at 1797.062 kb on + strand, within IAI46_08450at 1797.069 kb on + strand, within IAI46_08450at 1797.079 kb on - strand, within IAI46_08450at 1797.338 kb on + strand, within IAI46_08450at 1797.387 kb on - strand, within IAI46_08450at 1797.399 kb on - strand, within IAI46_08450at 1797.510 kb on + strandat 1797.511 kb on - strandat 1797.513 kb on - strandat 1797.554 kb on - strandat 1797.564 kb on + strandat 1797.605 kb on + strandat 1797.605 kb on + strandat 1797.649 kb on - strandat 1797.664 kb on + strandat 1797.719 kb on + strandat 1797.816 kb on - strand, within IAI46_08455at 1797.874 kb on - strand, within IAI46_08455at 1798.165 kb on + strandat 1798.166 kb on - strandat 1798.259 kb on + strand, within IAI46_08460at 1798.259 kb on + strand, within IAI46_08460at 1798.259 kb on + strand, within IAI46_08460at 1798.259 kb on + strand, within IAI46_08460at 1798.260 kb on - strand, within IAI46_08460at 1798.260 kb on - strand, within IAI46_08460at 1798.363 kb on + strand, within IAI46_08460at 1798.363 kb on + strand, within IAI46_08460at 1798.363 kb on + strand, within IAI46_08460at 1798.364 kb on - strand, within IAI46_08460at 1798.650 kb on - strand, within IAI46_08460at 1798.650 kb on - strand, within IAI46_08460at 1798.653 kb on + strand, within IAI46_08460at 1798.808 kb on - strand, within IAI46_08460at 1798.837 kb on - strand, within IAI46_08460at 1798.840 kb on + strand, within IAI46_08460at 1798.842 kb on + strand, within IAI46_08460at 1798.843 kb on - strand, within IAI46_08460at 1798.843 kb on - strand, within IAI46_08460at 1798.846 kb on + strand, within IAI46_08460at 1798.846 kb on + strand, within IAI46_08460at 1798.847 kb on - strand, within IAI46_08460at 1798.869 kb on + strand, within IAI46_08460at 1798.869 kb on + strand, within IAI46_08460at 1798.870 kb on - strand, within IAI46_08460at 1798.870 kb on - strand, within IAI46_08460at 1798.993 kb on + strand, within IAI46_08460at 1799.008 kb on - strandat 1799.008 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
remove
1,796,909 + IAI46_08450 0.55 -1.1
1,796,910 - IAI46_08450 0.55 -0.4
1,796,919 - IAI46_08450 0.56 +1.2
1,796,919 - IAI46_08450 0.56 -0.9
1,796,984 + IAI46_08450 0.60 +0.6
1,796,984 + IAI46_08450 0.60 -0.4
1,796,985 - IAI46_08450 0.61 +0.3
1,796,985 - IAI46_08450 0.61 +1.0
1,797,062 + IAI46_08450 0.66 +0.8
1,797,062 + IAI46_08450 0.66 -0.3
1,797,069 + IAI46_08450 0.66 +1.1
1,797,079 - IAI46_08450 0.67 +0.4
1,797,338 + IAI46_08450 0.85 +0.5
1,797,387 - IAI46_08450 0.88 +1.4
1,797,399 - IAI46_08450 0.89 -0.2
1,797,510 + -0.4
1,797,511 - +1.5
1,797,513 - -0.0
1,797,554 - +0.0
1,797,564 + -0.5
1,797,605 + -1.7
1,797,605 + -1.3
1,797,649 - +0.4
1,797,664 + +0.1
1,797,719 + -2.0
1,797,816 - IAI46_08455 0.34 -1.5
1,797,874 - IAI46_08455 0.51 -0.2
1,798,165 + -0.6
1,798,166 - +0.4
1,798,259 + IAI46_08460 0.17 +1.0
1,798,259 + IAI46_08460 0.17 -0.4
1,798,259 + IAI46_08460 0.17 +1.6
1,798,259 + IAI46_08460 0.17 +0.9
1,798,260 - IAI46_08460 0.18 -0.3
1,798,260 - IAI46_08460 0.18 +0.3
1,798,363 + IAI46_08460 0.28 +0.5
1,798,363 + IAI46_08460 0.28 +0.6
1,798,363 + IAI46_08460 0.28 +0.6
1,798,364 - IAI46_08460 0.28 +0.2
1,798,650 - IAI46_08460 0.56 +0.4
1,798,650 - IAI46_08460 0.56 -0.4
1,798,653 + IAI46_08460 0.56 +0.6
1,798,808 - IAI46_08460 0.71 +0.4
1,798,837 - IAI46_08460 0.74 +0.3
1,798,840 + IAI46_08460 0.75 +0.2
1,798,842 + IAI46_08460 0.75 -1.5
1,798,843 - IAI46_08460 0.75 +1.0
1,798,843 - IAI46_08460 0.75 -0.6
1,798,846 + IAI46_08460 0.75 +0.4
1,798,846 + IAI46_08460 0.75 +1.1
1,798,847 - IAI46_08460 0.75 -0.4
1,798,869 + IAI46_08460 0.77 -0.1
1,798,869 + IAI46_08460 0.77 +0.0
1,798,870 - IAI46_08460 0.77 +0.7
1,798,870 - IAI46_08460 0.77 +0.6
1,798,993 + IAI46_08460 0.90 -0.4
1,799,008 - -0.6
1,799,008 - +0.6

Or see this region's nucleotide sequence