Strain Fitness in Serratia liquefaciens MT49 around IAI46_08130

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08125 and IAI46_08130 overlap by 1 nucleotidesIAI46_08130 and IAI46_08135 are separated by 31 nucleotides IAI46_08125: IAI46_08125 - ABC transporter permease, at 1,727,860 to 1,728,627 _08125 IAI46_08130: IAI46_08130 - ABC transporter ATP-binding protein, at 1,728,627 to 1,729,367 _08130 IAI46_08135: IAI46_08135 - DUF4422 domain-containing protein, at 1,729,399 to 1,731,297 _08135 Position (kb) 1728 1729 1730Strain fitness (log2 ratio) -1 0 1 2at 1727.627 kb on + strandat 1727.860 kb on - strandat 1727.868 kb on + strandat 1728.325 kb on - strand, within IAI46_08125at 1728.625 kb on + strandat 1728.809 kb on + strand, within IAI46_08130at 1728.863 kb on - strand, within IAI46_08130at 1728.983 kb on - strand, within IAI46_08130at 1729.138 kb on + strand, within IAI46_08130at 1729.472 kb on + strandat 1729.837 kb on + strand, within IAI46_08135

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,727,627 + +0.2
1,727,860 - +0.2
1,727,868 + +0.7
1,728,325 - IAI46_08125 0.61 +0.9
1,728,625 + +1.7
1,728,809 + IAI46_08130 0.25 -0.5
1,728,863 - IAI46_08130 0.32 -0.7
1,728,983 - IAI46_08130 0.48 -0.7
1,729,138 + IAI46_08130 0.69 +0.3
1,729,472 + +0.4
1,729,837 + IAI46_08135 0.23 +2.2

Or see this region's nucleotide sequence