Strain Fitness in Serratia liquefaciens MT49 around IAI46_08045

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08035 and IAI46_08040 overlap by 4 nucleotidesIAI46_08040 and IAI46_08045 are separated by 48 nucleotidesIAI46_08045 and IAI46_08050 are separated by 30 nucleotides IAI46_08035: IAI46_08035 - oligosaccharide flippase family protein, at 1,702,164 to 1,703,402 _08035 IAI46_08040: IAI46_08040 - acyltransferase, at 1,703,399 to 1,703,905 _08040 IAI46_08045: IAI46_08045 - hypothetical protein, at 1,703,954 to 1,704,970 _08045 IAI46_08050: IAI46_08050 - glycosyltransferase family 4 protein, at 1,705,001 to 1,706,137 _08050 Position (kb) 1703 1704 1705Strain fitness (log2 ratio) -2 -1 0 1 2at 1703.040 kb on - strand, within IAI46_08035at 1703.134 kb on - strand, within IAI46_08035at 1703.137 kb on - strand, within IAI46_08035at 1703.677 kb on + strand, within IAI46_08040at 1703.678 kb on - strand, within IAI46_08040at 1703.681 kb on + strand, within IAI46_08040at 1703.681 kb on + strand, within IAI46_08040at 1703.682 kb on - strand, within IAI46_08040at 1703.683 kb on + strand, within IAI46_08040at 1703.757 kb on + strand, within IAI46_08040at 1703.757 kb on + strand, within IAI46_08040at 1703.874 kb on + strandat 1703.927 kb on + strandat 1703.927 kb on + strandat 1703.973 kb on - strandat 1704.152 kb on + strand, within IAI46_08045at 1704.278 kb on - strand, within IAI46_08045at 1704.488 kb on - strand, within IAI46_08045at 1704.807 kb on - strand, within IAI46_08045at 1704.893 kb on - strandat 1704.929 kb on + strandat 1705.175 kb on + strand, within IAI46_08050at 1705.288 kb on + strand, within IAI46_08050at 1705.288 kb on + strand, within IAI46_08050at 1705.360 kb on - strand, within IAI46_08050at 1705.467 kb on + strand, within IAI46_08050at 1705.468 kb on - strand, within IAI46_08050at 1705.468 kb on - strand, within IAI46_08050at 1705.487 kb on - strand, within IAI46_08050at 1705.563 kb on + strand, within IAI46_08050at 1705.601 kb on - strand, within IAI46_08050at 1705.601 kb on - strand, within IAI46_08050at 1705.601 kb on - strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.605 kb on - strand, within IAI46_08050at 1705.605 kb on - strand, within IAI46_08050at 1705.605 kb on - strand, within IAI46_08050at 1705.605 kb on - strand, within IAI46_08050at 1705.605 kb on - strand, within IAI46_08050at 1705.606 kb on + strand, within IAI46_08050at 1705.610 kb on + strand, within IAI46_08050at 1705.610 kb on + strand, within IAI46_08050at 1705.610 kb on + strand, within IAI46_08050at 1705.610 kb on + strand, within IAI46_08050at 1705.611 kb on - strand, within IAI46_08050at 1705.660 kb on - strand, within IAI46_08050at 1705.777 kb on + strand, within IAI46_08050at 1705.778 kb on - strand, within IAI46_08050at 1705.956 kb on - strand, within IAI46_08050at 1705.957 kb on + strand, within IAI46_08050at 1705.958 kb on - strand, within IAI46_08050at 1705.961 kb on - strand, within IAI46_08050

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,703,040 - IAI46_08035 0.71 +0.9
1,703,134 - IAI46_08035 0.78 -0.1
1,703,137 - IAI46_08035 0.79 -0.4
1,703,677 + IAI46_08040 0.55 -0.0
1,703,678 - IAI46_08040 0.55 +0.6
1,703,681 + IAI46_08040 0.56 -0.6
1,703,681 + IAI46_08040 0.56 -0.0
1,703,682 - IAI46_08040 0.56 +0.5
1,703,683 + IAI46_08040 0.56 +0.4
1,703,757 + IAI46_08040 0.71 -1.6
1,703,757 + IAI46_08040 0.71 +0.7
1,703,874 + +0.3
1,703,927 + -2.4
1,703,927 + +0.5
1,703,973 - +0.4
1,704,152 + IAI46_08045 0.19 +0.7
1,704,278 - IAI46_08045 0.32 -0.3
1,704,488 - IAI46_08045 0.53 -0.1
1,704,807 - IAI46_08045 0.84 +1.2
1,704,893 - +1.4
1,704,929 + -0.1
1,705,175 + IAI46_08050 0.15 -2.7
1,705,288 + IAI46_08050 0.25 +1.0
1,705,288 + IAI46_08050 0.25 -0.9
1,705,360 - IAI46_08050 0.32 +0.3
1,705,467 + IAI46_08050 0.41 +0.7
1,705,468 - IAI46_08050 0.41 +0.7
1,705,468 - IAI46_08050 0.41 -0.9
1,705,487 - IAI46_08050 0.43 +0.3
1,705,563 + IAI46_08050 0.49 -0.1
1,705,601 - IAI46_08050 0.53 -0.9
1,705,601 - IAI46_08050 0.53 -1.0
1,705,601 - IAI46_08050 0.53 +0.8
1,705,604 + IAI46_08050 0.53 -0.0
1,705,604 + IAI46_08050 0.53 +0.8
1,705,604 + IAI46_08050 0.53 -1.8
1,705,604 + IAI46_08050 0.53 +0.1
1,705,604 + IAI46_08050 0.53 +1.8
1,705,604 + IAI46_08050 0.53 +0.9
1,705,604 + IAI46_08050 0.53 -0.1
1,705,604 + IAI46_08050 0.53 -0.0
1,705,605 - IAI46_08050 0.53 -2.5
1,705,605 - IAI46_08050 0.53 +2.3
1,705,605 - IAI46_08050 0.53 +0.3
1,705,605 - IAI46_08050 0.53 +0.3
1,705,605 - IAI46_08050 0.53 -0.3
1,705,606 + IAI46_08050 0.53 -1.7
1,705,610 + IAI46_08050 0.54 -0.0
1,705,610 + IAI46_08050 0.54 +0.7
1,705,610 + IAI46_08050 0.54 -1.7
1,705,610 + IAI46_08050 0.54 -0.6
1,705,611 - IAI46_08050 0.54 -1.7
1,705,660 - IAI46_08050 0.58 -1.1
1,705,777 + IAI46_08050 0.68 +0.9
1,705,778 - IAI46_08050 0.68 +0.3
1,705,956 - IAI46_08050 0.84 -0.9
1,705,957 + IAI46_08050 0.84 -0.4
1,705,958 - IAI46_08050 0.84 -0.5
1,705,961 - IAI46_08050 0.84 +0.1

Or see this region's nucleotide sequence