Strain Fitness in Serratia liquefaciens MT49 around IAI46_07650

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07645 and IAI46_07650 are separated by 464 nucleotidesIAI46_07650 and IAI46_07655 are separated by 79 nucleotidesIAI46_07655 and IAI46_07660 are separated by 79 nucleotides IAI46_07645: IAI46_07645 - response regulator transcription factor, at 1,613,460 to 1,614,089 _07645 IAI46_07650: IAI46_07650 - common pilus major fimbrillin subunit EcpA, at 1,614,554 to 1,615,141 _07650 IAI46_07655: IAI46_07655 - hypothetical protein, at 1,615,221 to 1,615,889 _07655 IAI46_07660: IAI46_07660 - CS1-pili formation C-terminal domain-containing protein, at 1,615,969 to 1,618,494 _07660 Position (kb) 1614 1615 1616Strain fitness (log2 ratio) -2 -1 0 1at 1613.554 kb on + strand, within IAI46_07645at 1613.559 kb on + strand, within IAI46_07645at 1613.559 kb on + strand, within IAI46_07645at 1613.627 kb on - strand, within IAI46_07645at 1613.637 kb on + strand, within IAI46_07645at 1613.638 kb on - strand, within IAI46_07645at 1613.638 kb on - strand, within IAI46_07645at 1613.719 kb on + strand, within IAI46_07645at 1613.724 kb on - strand, within IAI46_07645at 1613.747 kb on - strand, within IAI46_07645at 1613.776 kb on + strand, within IAI46_07645at 1613.776 kb on + strand, within IAI46_07645at 1613.814 kb on + strand, within IAI46_07645at 1613.814 kb on + strand, within IAI46_07645at 1613.814 kb on + strand, within IAI46_07645at 1613.814 kb on + strand, within IAI46_07645at 1613.845 kb on + strand, within IAI46_07645at 1613.855 kb on + strand, within IAI46_07645at 1613.890 kb on + strand, within IAI46_07645at 1613.890 kb on + strand, within IAI46_07645at 1613.891 kb on - strand, within IAI46_07645at 1613.958 kb on - strand, within IAI46_07645at 1613.967 kb on - strand, within IAI46_07645at 1613.970 kb on - strand, within IAI46_07645at 1613.970 kb on - strand, within IAI46_07645at 1613.984 kb on + strand, within IAI46_07645at 1614.020 kb on + strand, within IAI46_07645at 1614.033 kb on - strandat 1614.033 kb on - strandat 1614.047 kb on + strandat 1614.048 kb on - strandat 1614.136 kb on + strandat 1614.165 kb on + strandat 1614.166 kb on - strandat 1614.166 kb on - strandat 1614.240 kb on - strandat 1614.240 kb on - strandat 1614.240 kb on - strandat 1614.243 kb on + strandat 1614.258 kb on + strandat 1614.268 kb on + strandat 1614.269 kb on - strandat 1614.269 kb on - strandat 1614.269 kb on - strandat 1614.272 kb on + strandat 1614.273 kb on - strandat 1614.308 kb on - strandat 1614.308 kb on - strandat 1614.335 kb on - strandat 1614.414 kb on + strandat 1614.415 kb on - strandat 1614.497 kb on - strandat 1614.497 kb on - strandat 1614.511 kb on + strandat 1614.512 kb on - strandat 1614.532 kb on + strandat 1614.628 kb on + strand, within IAI46_07650at 1614.722 kb on + strand, within IAI46_07650at 1614.777 kb on + strand, within IAI46_07650at 1614.777 kb on + strand, within IAI46_07650at 1614.777 kb on + strand, within IAI46_07650at 1614.817 kb on + strand, within IAI46_07650at 1614.818 kb on - strand, within IAI46_07650at 1614.851 kb on - strand, within IAI46_07650at 1614.884 kb on + strand, within IAI46_07650at 1615.030 kb on + strand, within IAI46_07650at 1615.031 kb on - strand, within IAI46_07650at 1615.051 kb on + strand, within IAI46_07650at 1615.090 kb on + strandat 1615.091 kb on - strandat 1615.091 kb on - strandat 1615.091 kb on - strandat 1615.160 kb on - strandat 1615.183 kb on + strandat 1615.183 kb on + strandat 1615.183 kb on + strandat 1615.184 kb on - strandat 1615.214 kb on + strandat 1615.437 kb on - strand, within IAI46_07655at 1615.437 kb on - strand, within IAI46_07655at 1615.437 kb on - strand, within IAI46_07655at 1615.509 kb on + strand, within IAI46_07655at 1615.509 kb on + strand, within IAI46_07655at 1615.510 kb on - strand, within IAI46_07655at 1615.539 kb on + strand, within IAI46_07655at 1615.540 kb on - strand, within IAI46_07655at 1615.540 kb on - strand, within IAI46_07655at 1615.628 kb on + strand, within IAI46_07655at 1615.628 kb on + strand, within IAI46_07655at 1615.629 kb on - strand, within IAI46_07655at 1615.721 kb on + strand, within IAI46_07655at 1615.721 kb on + strand, within IAI46_07655at 1615.722 kb on - strand, within IAI46_07655at 1615.739 kb on + strand, within IAI46_07655at 1615.739 kb on + strand, within IAI46_07655at 1615.740 kb on - strand, within IAI46_07655at 1615.916 kb on + strandat 1615.916 kb on + strandat 1615.917 kb on - strandat 1615.917 kb on - strandat 1615.919 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,613,554 + IAI46_07645 0.15 +1.2
1,613,559 + IAI46_07645 0.16 +0.8
1,613,559 + IAI46_07645 0.16 +0.3
1,613,627 - IAI46_07645 0.27 -0.7
1,613,637 + IAI46_07645 0.28 +0.0
1,613,638 - IAI46_07645 0.28 +0.4
1,613,638 - IAI46_07645 0.28 -0.4
1,613,719 + IAI46_07645 0.41 -2.0
1,613,724 - IAI46_07645 0.42 +1.2
1,613,747 - IAI46_07645 0.46 +1.2
1,613,776 + IAI46_07645 0.50 -1.3
1,613,776 + IAI46_07645 0.50 +0.7
1,613,814 + IAI46_07645 0.56 +0.3
1,613,814 + IAI46_07645 0.56 +0.4
1,613,814 + IAI46_07645 0.56 +0.6
1,613,814 + IAI46_07645 0.56 +0.6
1,613,845 + IAI46_07645 0.61 -0.1
1,613,855 + IAI46_07645 0.63 +0.7
1,613,890 + IAI46_07645 0.68 -1.4
1,613,890 + IAI46_07645 0.68 +0.6
1,613,891 - IAI46_07645 0.68 -0.0
1,613,958 - IAI46_07645 0.79 -0.0
1,613,967 - IAI46_07645 0.80 -0.9
1,613,970 - IAI46_07645 0.81 -0.4
1,613,970 - IAI46_07645 0.81 -0.4
1,613,984 + IAI46_07645 0.83 -1.2
1,614,020 + IAI46_07645 0.89 +0.2
1,614,033 - +0.4
1,614,033 - +0.3
1,614,047 + +0.9
1,614,048 - +0.9
1,614,136 + +0.3
1,614,165 + -0.1
1,614,166 - -0.4
1,614,166 - +0.8
1,614,240 - -0.7
1,614,240 - +0.2
1,614,240 - +0.0
1,614,243 + -1.1
1,614,258 + +0.1
1,614,268 + -0.8
1,614,269 - -0.0
1,614,269 - +0.9
1,614,269 - -1.2
1,614,272 + +0.1
1,614,273 - +0.3
1,614,308 - +1.4
1,614,308 - -1.3
1,614,335 - -0.0
1,614,414 + -0.1
1,614,415 - -0.1
1,614,497 - -0.0
1,614,497 - -1.5
1,614,511 + +1.2
1,614,512 - -0.5
1,614,532 + +0.6
1,614,628 + IAI46_07650 0.13 +1.0
1,614,722 + IAI46_07650 0.29 -0.4
1,614,777 + IAI46_07650 0.38 +0.8
1,614,777 + IAI46_07650 0.38 +0.1
1,614,777 + IAI46_07650 0.38 +0.6
1,614,817 + IAI46_07650 0.45 -0.9
1,614,818 - IAI46_07650 0.45 +1.0
1,614,851 - IAI46_07650 0.51 -0.4
1,614,884 + IAI46_07650 0.56 +0.3
1,615,030 + IAI46_07650 0.81 +0.2
1,615,031 - IAI46_07650 0.81 +0.1
1,615,051 + IAI46_07650 0.85 -0.3
1,615,090 + -1.2
1,615,091 - -0.5
1,615,091 - +1.7
1,615,091 - -0.7
1,615,160 - +1.7
1,615,183 + -0.1
1,615,183 + +1.1
1,615,183 + +0.1
1,615,184 - -0.1
1,615,214 + +0.3
1,615,437 - IAI46_07655 0.32 -0.9
1,615,437 - IAI46_07655 0.32 +0.5
1,615,437 - IAI46_07655 0.32 -0.2
1,615,509 + IAI46_07655 0.43 -0.3
1,615,509 + IAI46_07655 0.43 -0.3
1,615,510 - IAI46_07655 0.43 -0.1
1,615,539 + IAI46_07655 0.48 +0.5
1,615,540 - IAI46_07655 0.48 +0.0
1,615,540 - IAI46_07655 0.48 +0.3
1,615,628 + IAI46_07655 0.61 +0.2
1,615,628 + IAI46_07655 0.61 +0.3
1,615,629 - IAI46_07655 0.61 +0.2
1,615,721 + IAI46_07655 0.75 -0.4
1,615,721 + IAI46_07655 0.75 -0.3
1,615,722 - IAI46_07655 0.75 -0.5
1,615,739 + IAI46_07655 0.77 +0.1
1,615,739 + IAI46_07655 0.77 +0.1
1,615,740 - IAI46_07655 0.78 -1.0
1,615,916 + -1.0
1,615,916 + +0.5
1,615,917 - +0.7
1,615,917 - +0.0
1,615,919 - -0.0

Or see this region's nucleotide sequence