Strain Fitness in Serratia liquefaciens MT49 around IAI46_07525

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07520 and IAI46_07525 are separated by 160 nucleotidesIAI46_07525 and IAI46_07530 overlap by 4 nucleotidesIAI46_07530 and IAI46_07535 are separated by 105 nucleotides IAI46_07520: IAI46_07520 - mechanosensitive channel protein, at 1,589,487 to 1,591,706 _07520 IAI46_07525: IAI46_07525 - glutamine ABC transporter ATP-binding protein GlnQ, at 1,591,867 to 1,592,589 _07525 IAI46_07530: IAI46_07530 - glutamine ABC transporter permease GlnP, at 1,592,586 to 1,593,245 _07530 IAI46_07535: IAI46_07535 - glutamine ABC transporter substrate-binding protein GlnH, at 1,593,351 to 1,594,094 _07535 Position (kb) 1591 1592 1593Strain fitness (log2 ratio) -1 0 1at 1591.044 kb on + strand, within IAI46_07520at 1591.045 kb on - strand, within IAI46_07520at 1591.045 kb on - strand, within IAI46_07520at 1591.159 kb on + strand, within IAI46_07520at 1591.213 kb on + strand, within IAI46_07520at 1591.214 kb on - strand, within IAI46_07520at 1591.214 kb on - strand, within IAI46_07520at 1591.227 kb on + strand, within IAI46_07520at 1591.379 kb on + strand, within IAI46_07520at 1591.380 kb on - strand, within IAI46_07520at 1591.380 kb on - strand, within IAI46_07520at 1591.530 kb on - strandat 1591.627 kb on + strandat 1591.708 kb on + strandat 1591.708 kb on + strandat 1591.708 kb on + strandat 1591.708 kb on + strandat 1591.709 kb on - strandat 1591.709 kb on - strandat 1591.709 kb on - strandat 1591.728 kb on + strandat 1591.770 kb on + strandat 1591.770 kb on + strandat 1591.770 kb on + strandat 1591.771 kb on - strandat 1591.812 kb on + strandat 1591.822 kb on + strandat 1591.822 kb on + strandat 1591.823 kb on - strandat 1591.823 kb on - strandat 1591.863 kb on + strandat 1592.344 kb on + strand, within IAI46_07525at 1592.345 kb on - strand, within IAI46_07525at 1592.345 kb on - strand, within IAI46_07525at 1592.345 kb on - strand, within IAI46_07525at 1592.518 kb on - strandat 1592.645 kb on + strandat 1592.653 kb on + strand, within IAI46_07530at 1592.768 kb on + strand, within IAI46_07530at 1592.829 kb on - strand, within IAI46_07530at 1592.907 kb on + strand, within IAI46_07530at 1592.908 kb on - strand, within IAI46_07530at 1593.023 kb on - strand, within IAI46_07530at 1593.026 kb on + strand, within IAI46_07530at 1593.027 kb on - strand, within IAI46_07530at 1593.039 kb on + strand, within IAI46_07530at 1593.039 kb on + strand, within IAI46_07530at 1593.040 kb on - strand, within IAI46_07530at 1593.076 kb on - strand, within IAI46_07530at 1593.110 kb on - strand, within IAI46_07530at 1593.110 kb on - strand, within IAI46_07530at 1593.114 kb on - strand, within IAI46_07530at 1593.199 kb on - strandat 1593.284 kb on + strandat 1593.285 kb on - strandat 1593.323 kb on + strandat 1593.323 kb on + strandat 1593.324 kb on - strandat 1593.357 kb on - strandat 1593.394 kb on + strandat 1593.395 kb on - strandat 1593.395 kb on - strandat 1593.395 kb on - strandat 1593.545 kb on - strand, within IAI46_07535

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,591,044 + IAI46_07520 0.70 -0.3
1,591,045 - IAI46_07520 0.70 -0.6
1,591,045 - IAI46_07520 0.70 +0.4
1,591,159 + IAI46_07520 0.75 -0.8
1,591,213 + IAI46_07520 0.78 -1.2
1,591,214 - IAI46_07520 0.78 +0.1
1,591,214 - IAI46_07520 0.78 +0.1
1,591,227 + IAI46_07520 0.78 +0.8
1,591,379 + IAI46_07520 0.85 -1.1
1,591,380 - IAI46_07520 0.85 +0.6
1,591,380 - IAI46_07520 0.85 +0.3
1,591,530 - -0.7
1,591,627 + +0.1
1,591,708 + +1.4
1,591,708 + +0.4
1,591,708 + -0.3
1,591,708 + +0.1
1,591,709 - -1.0
1,591,709 - +0.1
1,591,709 - +0.3
1,591,728 + +0.3
1,591,770 + +0.1
1,591,770 + +0.9
1,591,770 + +0.4
1,591,771 - +0.5
1,591,812 + -0.4
1,591,822 + -0.6
1,591,822 + +0.4
1,591,823 - -0.1
1,591,823 - +1.0
1,591,863 + -1.7
1,592,344 + IAI46_07525 0.66 +0.1
1,592,345 - IAI46_07525 0.66 -0.0
1,592,345 - IAI46_07525 0.66 +0.1
1,592,345 - IAI46_07525 0.66 +0.3
1,592,518 - -0.4
1,592,645 + -0.5
1,592,653 + IAI46_07530 0.10 +0.9
1,592,768 + IAI46_07530 0.28 -0.1
1,592,829 - IAI46_07530 0.37 -0.1
1,592,907 + IAI46_07530 0.49 -1.3
1,592,908 - IAI46_07530 0.49 -0.3
1,593,023 - IAI46_07530 0.66 -0.1
1,593,026 + IAI46_07530 0.67 +0.1
1,593,027 - IAI46_07530 0.67 -0.6
1,593,039 + IAI46_07530 0.69 -0.6
1,593,039 + IAI46_07530 0.69 -0.4
1,593,040 - IAI46_07530 0.69 +0.3
1,593,076 - IAI46_07530 0.74 +0.5
1,593,110 - IAI46_07530 0.79 +0.6
1,593,110 - IAI46_07530 0.79 -0.5
1,593,114 - IAI46_07530 0.80 +0.2
1,593,199 - -0.4
1,593,284 + +0.1
1,593,285 - +0.3
1,593,323 + -0.2
1,593,323 + +0.4
1,593,324 - -0.2
1,593,357 - -1.0
1,593,394 + +1.2
1,593,395 - -1.2
1,593,395 - +0.3
1,593,395 - -0.1
1,593,545 - IAI46_07535 0.26 +1.0

Or see this region's nucleotide sequence