Strain Fitness in Serratia liquefaciens MT49 around IAI46_07450

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07445 and IAI46_07450 are separated by 0 nucleotidesIAI46_07450 and IAI46_07455 are separated by 136 nucleotides IAI46_07445: IAI46_07445 - ATP-dependent DNA helicase DinG, at 1,572,939 to 1,575,137 _07445 IAI46_07450: IAI46_07450 - Lrp/AsnC family transcriptional regulator, at 1,575,138 to 1,575,572 _07450 IAI46_07455: IAI46_07455 - DMT family transporter, at 1,575,709 to 1,576,623 _07455 Position (kb) 1575 1576Strain fitness (log2 ratio) -1 0 1at 1574.235 kb on + strand, within IAI46_07445at 1574.236 kb on - strand, within IAI46_07445at 1574.544 kb on - strand, within IAI46_07445at 1574.544 kb on - strand, within IAI46_07445at 1574.598 kb on + strand, within IAI46_07445at 1574.598 kb on + strand, within IAI46_07445at 1574.599 kb on - strand, within IAI46_07445at 1574.599 kb on - strand, within IAI46_07445at 1574.630 kb on - strand, within IAI46_07445at 1574.768 kb on + strand, within IAI46_07445at 1574.768 kb on + strand, within IAI46_07445at 1574.769 kb on - strand, within IAI46_07445at 1574.769 kb on - strand, within IAI46_07445at 1574.861 kb on - strand, within IAI46_07445at 1574.950 kb on - strandat 1575.065 kb on + strandat 1575.191 kb on + strand, within IAI46_07450at 1575.191 kb on + strand, within IAI46_07450at 1575.191 kb on + strand, within IAI46_07450at 1575.677 kb on + strandat 1575.685 kb on + strandat 1575.685 kb on + strandat 1575.691 kb on + strandat 1575.692 kb on - strandat 1575.722 kb on + strandat 1575.904 kb on - strand, within IAI46_07455at 1575.904 kb on - strand, within IAI46_07455at 1575.907 kb on - strand, within IAI46_07455at 1575.948 kb on + strand, within IAI46_07455at 1575.974 kb on - strand, within IAI46_07455at 1575.974 kb on - strand, within IAI46_07455at 1576.009 kb on + strand, within IAI46_07455at 1576.010 kb on - strand, within IAI46_07455at 1576.010 kb on - strand, within IAI46_07455at 1576.010 kb on - strand, within IAI46_07455at 1576.011 kb on + strand, within IAI46_07455at 1576.012 kb on - strand, within IAI46_07455at 1576.078 kb on - strand, within IAI46_07455at 1576.078 kb on - strand, within IAI46_07455at 1576.094 kb on + strand, within IAI46_07455at 1576.095 kb on - strand, within IAI46_07455at 1576.162 kb on + strand, within IAI46_07455at 1576.275 kb on - strand, within IAI46_07455at 1576.344 kb on + strand, within IAI46_07455at 1576.345 kb on - strand, within IAI46_07455at 1576.345 kb on - strand, within IAI46_07455at 1576.365 kb on - strand, within IAI46_07455at 1576.365 kb on - strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.385 kb on - strand, within IAI46_07455at 1576.385 kb on - strand, within IAI46_07455at 1576.385 kb on - strand, within IAI46_07455at 1576.385 kb on - strand, within IAI46_07455

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,574,235 + IAI46_07445 0.59 +0.5
1,574,236 - IAI46_07445 0.59 -0.9
1,574,544 - IAI46_07445 0.73 +1.7
1,574,544 - IAI46_07445 0.73 +1.2
1,574,598 + IAI46_07445 0.75 +1.4
1,574,598 + IAI46_07445 0.75 -0.2
1,574,599 - IAI46_07445 0.75 +0.1
1,574,599 - IAI46_07445 0.75 -0.6
1,574,630 - IAI46_07445 0.77 +0.7
1,574,768 + IAI46_07445 0.83 -0.4
1,574,768 + IAI46_07445 0.83 +0.1
1,574,769 - IAI46_07445 0.83 +0.1
1,574,769 - IAI46_07445 0.83 -0.1
1,574,861 - IAI46_07445 0.87 +1.3
1,574,950 - -0.5
1,575,065 + +0.6
1,575,191 + IAI46_07450 0.12 -1.6
1,575,191 + IAI46_07450 0.12 -0.4
1,575,191 + IAI46_07450 0.12 -0.9
1,575,677 + +0.3
1,575,685 + -0.2
1,575,685 + -0.0
1,575,691 + -0.9
1,575,692 - +0.0
1,575,722 + +0.5
1,575,904 - IAI46_07455 0.21 +0.6
1,575,904 - IAI46_07455 0.21 +1.4
1,575,907 - IAI46_07455 0.22 -1.0
1,575,948 + IAI46_07455 0.26 +0.2
1,575,974 - IAI46_07455 0.29 +0.7
1,575,974 - IAI46_07455 0.29 +1.5
1,576,009 + IAI46_07455 0.33 +0.3
1,576,010 - IAI46_07455 0.33 +0.7
1,576,010 - IAI46_07455 0.33 +1.7
1,576,010 - IAI46_07455 0.33 +1.7
1,576,011 + IAI46_07455 0.33 +0.7
1,576,012 - IAI46_07455 0.33 +0.5
1,576,078 - IAI46_07455 0.40 +1.4
1,576,078 - IAI46_07455 0.40 +1.0
1,576,094 + IAI46_07455 0.42 +0.5
1,576,095 - IAI46_07455 0.42 -0.2
1,576,162 + IAI46_07455 0.50 +0.5
1,576,275 - IAI46_07455 0.62 +0.7
1,576,344 + IAI46_07455 0.69 +0.4
1,576,345 - IAI46_07455 0.70 +0.2
1,576,345 - IAI46_07455 0.70 -0.6
1,576,365 - IAI46_07455 0.72 -0.4
1,576,365 - IAI46_07455 0.72 +1.1
1,576,384 + IAI46_07455 0.74 -0.3
1,576,384 + IAI46_07455 0.74 +0.6
1,576,384 + IAI46_07455 0.74 +0.1
1,576,384 + IAI46_07455 0.74 +0.1
1,576,384 + IAI46_07455 0.74 +0.2
1,576,384 + IAI46_07455 0.74 +0.1
1,576,385 - IAI46_07455 0.74 -0.1
1,576,385 - IAI46_07455 0.74 -0.0
1,576,385 - IAI46_07455 0.74 +1.3
1,576,385 - IAI46_07455 0.74 -0.8

Or see this region's nucleotide sequence