Strain Fitness in Serratia liquefaciens MT49 around IAI46_06785

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06780 and IAI46_06785 are separated by 447 nucleotidesIAI46_06785 and IAI46_06790 are separated by 127 nucleotides IAI46_06780: IAI46_06780 - L-asparagine permease, at 1,440,091 to 1,441,554 _06780 IAI46_06785: IAI46_06785 - PACE efflux transporter, at 1,442,002 to 1,442,439 _06785 IAI46_06790: IAI46_06790 - LysR family transcriptional regulator, at 1,442,567 to 1,443,460 _06790 Position (kb) 1442 1443Strain fitness (log2 ratio) -1 0 1 2at 1441.007 kb on - strand, within IAI46_06780at 1441.151 kb on + strand, within IAI46_06780at 1441.151 kb on + strand, within IAI46_06780at 1441.152 kb on - strand, within IAI46_06780at 1441.160 kb on + strand, within IAI46_06780at 1441.179 kb on + strand, within IAI46_06780at 1441.233 kb on - strand, within IAI46_06780at 1441.233 kb on - strand, within IAI46_06780at 1441.265 kb on + strand, within IAI46_06780at 1441.265 kb on + strand, within IAI46_06780at 1441.266 kb on - strand, within IAI46_06780at 1441.266 kb on - strand, within IAI46_06780at 1441.270 kb on + strand, within IAI46_06780at 1441.271 kb on - strand, within IAI46_06780at 1441.340 kb on - strand, within IAI46_06780at 1441.340 kb on - strand, within IAI46_06780at 1441.342 kb on - strand, within IAI46_06780at 1441.342 kb on - strand, within IAI46_06780at 1441.450 kb on + strandat 1441.450 kb on + strandat 1441.451 kb on - strandat 1441.451 kb on - strandat 1441.498 kb on + strandat 1441.543 kb on - strandat 1441.904 kb on - strandat 1441.929 kb on + strandat 1441.932 kb on + strandat 1441.932 kb on + strandat 1441.933 kb on - strandat 1441.933 kb on - strandat 1441.933 kb on - strandat 1441.978 kb on + strandat 1441.978 kb on + strandat 1441.979 kb on - strandat 1441.979 kb on - strandat 1442.047 kb on + strand, within IAI46_06785at 1442.067 kb on + strand, within IAI46_06785at 1442.098 kb on + strand, within IAI46_06785at 1442.098 kb on + strand, within IAI46_06785at 1442.099 kb on - strand, within IAI46_06785at 1442.136 kb on + strand, within IAI46_06785at 1442.171 kb on + strand, within IAI46_06785at 1442.172 kb on - strand, within IAI46_06785at 1442.180 kb on - strand, within IAI46_06785at 1442.185 kb on + strand, within IAI46_06785at 1442.211 kb on + strand, within IAI46_06785at 1442.221 kb on - strand, within IAI46_06785at 1442.221 kb on - strand, within IAI46_06785at 1442.227 kb on - strand, within IAI46_06785at 1442.277 kb on - strand, within IAI46_06785at 1442.308 kb on - strand, within IAI46_06785at 1442.399 kb on + strandat 1442.400 kb on - strandat 1442.400 kb on - strandat 1442.411 kb on + strandat 1442.411 kb on + strandat 1442.412 kb on - strandat 1442.440 kb on + strandat 1442.440 kb on + strandat 1442.440 kb on + strandat 1442.440 kb on + strandat 1442.441 kb on - strandat 1442.441 kb on - strandat 1442.506 kb on + strandat 1442.506 kb on + strandat 1442.524 kb on + strandat 1442.655 kb on + strandat 1442.687 kb on - strand, within IAI46_06790at 1442.797 kb on + strand, within IAI46_06790at 1442.936 kb on - strand, within IAI46_06790at 1442.936 kb on - strand, within IAI46_06790at 1442.974 kb on + strand, within IAI46_06790at 1442.974 kb on + strand, within IAI46_06790at 1442.975 kb on - strand, within IAI46_06790at 1442.975 kb on - strand, within IAI46_06790at 1442.975 kb on - strand, within IAI46_06790at 1442.975 kb on - strand, within IAI46_06790at 1442.975 kb on - strand, within IAI46_06790at 1443.021 kb on + strand, within IAI46_06790at 1443.021 kb on + strand, within IAI46_06790at 1443.156 kb on + strand, within IAI46_06790at 1443.157 kb on - strand, within IAI46_06790at 1443.157 kb on - strand, within IAI46_06790at 1443.310 kb on - strand, within IAI46_06790at 1443.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,441,007 - IAI46_06780 0.63 +0.6
1,441,151 + IAI46_06780 0.72 -0.2
1,441,151 + IAI46_06780 0.72 -0.6
1,441,152 - IAI46_06780 0.72 +0.5
1,441,160 + IAI46_06780 0.73 -0.2
1,441,179 + IAI46_06780 0.74 -1.2
1,441,233 - IAI46_06780 0.78 +0.2
1,441,233 - IAI46_06780 0.78 -0.2
1,441,265 + IAI46_06780 0.80 +0.9
1,441,265 + IAI46_06780 0.80 +0.5
1,441,266 - IAI46_06780 0.80 -0.4
1,441,266 - IAI46_06780 0.80 +0.3
1,441,270 + IAI46_06780 0.81 -0.3
1,441,271 - IAI46_06780 0.81 -0.7
1,441,340 - IAI46_06780 0.85 -0.0
1,441,340 - IAI46_06780 0.85 +0.1
1,441,342 - IAI46_06780 0.85 +0.4
1,441,342 - IAI46_06780 0.85 +0.6
1,441,450 + -0.2
1,441,450 + +0.1
1,441,451 - +0.5
1,441,451 - +2.2
1,441,498 + -0.9
1,441,543 - -0.8
1,441,904 - +0.1
1,441,929 + -0.7
1,441,932 + -0.1
1,441,932 + -0.3
1,441,933 - -0.4
1,441,933 - -1.0
1,441,933 - -0.1
1,441,978 + +1.3
1,441,978 + -0.5
1,441,979 - +1.8
1,441,979 - +1.1
1,442,047 + IAI46_06785 0.10 +0.4
1,442,067 + IAI46_06785 0.15 +0.4
1,442,098 + IAI46_06785 0.22 -0.8
1,442,098 + IAI46_06785 0.22 +0.4
1,442,099 - IAI46_06785 0.22 +0.7
1,442,136 + IAI46_06785 0.31 -0.6
1,442,171 + IAI46_06785 0.39 +0.6
1,442,172 - IAI46_06785 0.39 +0.5
1,442,180 - IAI46_06785 0.41 +0.4
1,442,185 + IAI46_06785 0.42 +0.1
1,442,211 + IAI46_06785 0.48 -1.2
1,442,221 - IAI46_06785 0.50 -0.8
1,442,221 - IAI46_06785 0.50 +0.1
1,442,227 - IAI46_06785 0.51 -0.3
1,442,277 - IAI46_06785 0.63 +1.3
1,442,308 - IAI46_06785 0.70 +0.8
1,442,399 + -0.2
1,442,400 - +0.2
1,442,400 - -0.1
1,442,411 + -0.2
1,442,411 + +0.4
1,442,412 - +0.5
1,442,440 + +0.2
1,442,440 + -0.0
1,442,440 + -0.3
1,442,440 + +0.5
1,442,441 - +0.1
1,442,441 - -0.7
1,442,506 + -1.7
1,442,506 + +0.6
1,442,524 + +0.5
1,442,655 + -0.1
1,442,687 - IAI46_06790 0.13 -0.3
1,442,797 + IAI46_06790 0.26 +0.1
1,442,936 - IAI46_06790 0.41 +0.4
1,442,936 - IAI46_06790 0.41 +0.8
1,442,974 + IAI46_06790 0.46 +0.8
1,442,974 + IAI46_06790 0.46 +0.7
1,442,975 - IAI46_06790 0.46 +0.3
1,442,975 - IAI46_06790 0.46 -0.8
1,442,975 - IAI46_06790 0.46 +0.0
1,442,975 - IAI46_06790 0.46 -0.1
1,442,975 - IAI46_06790 0.46 -0.0
1,443,021 + IAI46_06790 0.51 +0.8
1,443,021 + IAI46_06790 0.51 -0.2
1,443,156 + IAI46_06790 0.66 -0.7
1,443,157 - IAI46_06790 0.66 -0.4
1,443,157 - IAI46_06790 0.66 -0.3
1,443,310 - IAI46_06790 0.83 -0.4
1,443,373 - -0.1

Or see this region's nucleotide sequence