Strain Fitness in Serratia liquefaciens MT49 around IAI46_06750

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06745 and IAI46_06750 are separated by 200 nucleotidesIAI46_06750 and IAI46_06755 are separated by 93 nucleotides IAI46_06745: IAI46_06745 - arylamine N-acetyltransferase, at 1,432,819 to 1,433,580 _06745 IAI46_06750: IAI46_06750 - LysR family transcriptional regulator, at 1,433,781 to 1,434,719 _06750 IAI46_06755: IAI46_06755 - DMT family transporter, at 1,434,813 to 1,435,661 _06755 Position (kb) 1433 1434 1435Strain fitness (log2 ratio) -2 -1 0 1at 1432.789 kb on + strandat 1432.789 kb on + strandat 1432.812 kb on + strandat 1432.812 kb on + strandat 1432.812 kb on + strandat 1432.812 kb on + strandat 1432.812 kb on + strandat 1432.812 kb on + strandat 1432.813 kb on - strandat 1433.117 kb on + strand, within IAI46_06745at 1433.117 kb on + strand, within IAI46_06745at 1433.120 kb on + strand, within IAI46_06745at 1433.120 kb on + strand, within IAI46_06745at 1433.251 kb on + strand, within IAI46_06745at 1433.252 kb on - strand, within IAI46_06745at 1433.319 kb on + strand, within IAI46_06745at 1433.379 kb on - strand, within IAI46_06745at 1433.458 kb on - strand, within IAI46_06745at 1433.490 kb on + strand, within IAI46_06745at 1433.553 kb on + strandat 1433.553 kb on + strandat 1433.553 kb on + strandat 1433.554 kb on - strandat 1433.554 kb on - strandat 1433.554 kb on - strandat 1433.564 kb on + strandat 1433.564 kb on + strandat 1433.574 kb on + strandat 1433.610 kb on + strandat 1433.610 kb on + strandat 1433.610 kb on + strandat 1433.610 kb on + strandat 1433.610 kb on + strandat 1433.610 kb on + strandat 1433.610 kb on + strandat 1433.666 kb on + strandat 1433.667 kb on - strandat 1433.675 kb on + strandat 1433.695 kb on + strandat 1433.696 kb on - strandat 1433.696 kb on - strandat 1433.734 kb on - strandat 1433.734 kb on - strandat 1433.734 kb on - strandat 1433.735 kb on + strandat 1433.740 kb on + strandat 1433.741 kb on - strandat 1433.770 kb on + strandat 1433.770 kb on + strandat 1433.770 kb on + strandat 1433.770 kb on + strandat 1433.771 kb on - strandat 1433.884 kb on + strand, within IAI46_06750at 1433.885 kb on - strand, within IAI46_06750at 1433.885 kb on - strand, within IAI46_06750at 1433.885 kb on - strand, within IAI46_06750at 1434.034 kb on - strand, within IAI46_06750at 1434.053 kb on + strand, within IAI46_06750at 1434.054 kb on - strand, within IAI46_06750at 1434.104 kb on + strand, within IAI46_06750at 1434.104 kb on + strand, within IAI46_06750at 1434.257 kb on + strand, within IAI46_06750at 1434.257 kb on + strand, within IAI46_06750at 1434.357 kb on + strand, within IAI46_06750at 1434.579 kb on + strand, within IAI46_06750at 1434.579 kb on + strand, within IAI46_06750at 1434.579 kb on + strand, within IAI46_06750at 1434.580 kb on - strand, within IAI46_06750at 1434.580 kb on - strand, within IAI46_06750at 1434.665 kb on + strandat 1434.665 kb on + strandat 1434.665 kb on + strandat 1434.666 kb on - strandat 1434.666 kb on - strandat 1434.739 kb on - strandat 1434.739 kb on - strandat 1434.808 kb on + strandat 1434.809 kb on - strandat 1434.967 kb on + strand, within IAI46_06755at 1434.967 kb on + strand, within IAI46_06755at 1434.968 kb on - strand, within IAI46_06755at 1434.968 kb on - strand, within IAI46_06755at 1434.968 kb on - strand, within IAI46_06755at 1435.109 kb on + strand, within IAI46_06755at 1435.109 kb on + strand, within IAI46_06755at 1435.278 kb on + strand, within IAI46_06755at 1435.279 kb on - strand, within IAI46_06755at 1435.297 kb on + strand, within IAI46_06755at 1435.309 kb on - strand, within IAI46_06755at 1435.354 kb on - strand, within IAI46_06755at 1435.354 kb on - strand, within IAI46_06755at 1435.356 kb on - strand, within IAI46_06755at 1435.356 kb on - strand, within IAI46_06755at 1435.379 kb on - strand, within IAI46_06755at 1435.573 kb on + strand, within IAI46_06755at 1435.646 kb on + strandat 1435.692 kb on + strandat 1435.719 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,432,789 + +0.7
1,432,789 + +0.8
1,432,812 + -1.3
1,432,812 + -0.7
1,432,812 + -0.4
1,432,812 + -0.2
1,432,812 + +0.6
1,432,812 + +0.6
1,432,813 - +0.2
1,433,117 + IAI46_06745 0.39 +0.2
1,433,117 + IAI46_06745 0.39 +1.0
1,433,120 + IAI46_06745 0.40 +0.9
1,433,120 + IAI46_06745 0.40 -0.6
1,433,251 + IAI46_06745 0.57 -0.2
1,433,252 - IAI46_06745 0.57 +0.6
1,433,319 + IAI46_06745 0.66 -0.7
1,433,379 - IAI46_06745 0.73 +0.0
1,433,458 - IAI46_06745 0.84 -0.4
1,433,490 + IAI46_06745 0.88 -1.5
1,433,553 + -0.8
1,433,553 + -0.5
1,433,553 + +0.1
1,433,554 - +0.8
1,433,554 - +0.2
1,433,554 - -0.1
1,433,564 + +0.4
1,433,564 + -1.0
1,433,574 + +0.0
1,433,610 + -0.3
1,433,610 + -0.4
1,433,610 + +0.9
1,433,610 + +0.7
1,433,610 + +0.8
1,433,610 + +0.4
1,433,610 + +0.2
1,433,666 + +0.3
1,433,667 - +0.3
1,433,675 + +0.8
1,433,695 + +0.8
1,433,696 - +1.0
1,433,696 - +0.5
1,433,734 - +0.4
1,433,734 - -1.0
1,433,734 - +0.2
1,433,735 + +0.3
1,433,740 + +0.6
1,433,741 - +0.2
1,433,770 + -0.4
1,433,770 + -2.3
1,433,770 + +0.0
1,433,770 + +0.1
1,433,771 - +0.9
1,433,884 + IAI46_06750 0.11 +0.2
1,433,885 - IAI46_06750 0.11 -0.6
1,433,885 - IAI46_06750 0.11 -0.5
1,433,885 - IAI46_06750 0.11 -0.5
1,434,034 - IAI46_06750 0.27 -0.5
1,434,053 + IAI46_06750 0.29 -0.4
1,434,054 - IAI46_06750 0.29 +1.2
1,434,104 + IAI46_06750 0.34 +0.8
1,434,104 + IAI46_06750 0.34 +0.2
1,434,257 + IAI46_06750 0.51 +0.4
1,434,257 + IAI46_06750 0.51 +0.0
1,434,357 + IAI46_06750 0.61 -0.5
1,434,579 + IAI46_06750 0.85 +0.0
1,434,579 + IAI46_06750 0.85 -0.3
1,434,579 + IAI46_06750 0.85 +0.7
1,434,580 - IAI46_06750 0.85 +0.2
1,434,580 - IAI46_06750 0.85 -0.6
1,434,665 + +1.6
1,434,665 + -0.6
1,434,665 + +1.5
1,434,666 - +0.6
1,434,666 - +0.2
1,434,739 - -0.4
1,434,739 - -0.1
1,434,808 + +0.5
1,434,809 - -0.5
1,434,967 + IAI46_06755 0.18 -0.2
1,434,967 + IAI46_06755 0.18 +0.2
1,434,968 - IAI46_06755 0.18 +0.5
1,434,968 - IAI46_06755 0.18 +0.5
1,434,968 - IAI46_06755 0.18 +1.4
1,435,109 + IAI46_06755 0.35 +0.4
1,435,109 + IAI46_06755 0.35 +0.5
1,435,278 + IAI46_06755 0.55 +0.4
1,435,279 - IAI46_06755 0.55 +0.4
1,435,297 + IAI46_06755 0.57 +0.5
1,435,309 - IAI46_06755 0.58 -0.3
1,435,354 - IAI46_06755 0.64 +0.5
1,435,354 - IAI46_06755 0.64 -0.5
1,435,356 - IAI46_06755 0.64 -0.9
1,435,356 - IAI46_06755 0.64 +0.8
1,435,379 - IAI46_06755 0.67 -0.4
1,435,573 + IAI46_06755 0.90 -0.8
1,435,646 + +0.3
1,435,692 + -0.0
1,435,719 + +0.4

Or see this region's nucleotide sequence