Strain Fitness in Serratia liquefaciens MT49 around IAI46_06225

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06215 and IAI46_06220 overlap by 7 nucleotidesIAI46_06220 and IAI46_06225 overlap by 11 nucleotidesIAI46_06225 and IAI46_06230 are separated by 170 nucleotidesIAI46_06230 and IAI46_06235 overlap by 4 nucleotides IAI46_06215: IAI46_06215 - 5-oxoprolinase subunit PxpB, at 1,330,883 to 1,331,539 _06215 IAI46_06220: IAI46_06220 - biotin-dependent carboxyltransferase family protein, at 1,331,533 to 1,332,465 _06220 IAI46_06225: IAI46_06225 - 5-oxoprolinase subunit PxpA, at 1,332,455 to 1,333,192 _06225 IAI46_06230: IAI46_06230 - DUF969 domain-containing protein, at 1,333,363 to 1,334,094 _06230 IAI46_06235: IAI46_06235 - DUF979 domain-containing protein, at 1,334,091 to 1,335,110 _06235 Position (kb) 1332 1333 1334Strain fitness (log2 ratio) -2 -1 0 1 2at 1331.465 kb on + strand, within IAI46_06215at 1331.532 kb on + strandat 1331.532 kb on + strandat 1331.532 kb on + strandat 1331.532 kb on + strandat 1331.560 kb on + strandat 1331.673 kb on + strand, within IAI46_06220at 1331.866 kb on + strand, within IAI46_06220at 1331.866 kb on + strand, within IAI46_06220at 1331.866 kb on + strand, within IAI46_06220at 1331.958 kb on + strand, within IAI46_06220at 1331.959 kb on - strand, within IAI46_06220at 1332.249 kb on + strand, within IAI46_06220at 1332.261 kb on + strand, within IAI46_06220at 1332.288 kb on + strand, within IAI46_06220at 1332.288 kb on + strand, within IAI46_06220at 1332.334 kb on + strand, within IAI46_06220at 1332.335 kb on - strand, within IAI46_06220at 1332.603 kb on - strand, within IAI46_06225at 1332.689 kb on + strand, within IAI46_06225at 1332.689 kb on + strand, within IAI46_06225at 1332.690 kb on - strand, within IAI46_06225at 1332.690 kb on - strand, within IAI46_06225at 1332.690 kb on - strand, within IAI46_06225at 1332.704 kb on + strand, within IAI46_06225at 1332.705 kb on - strand, within IAI46_06225at 1332.783 kb on - strand, within IAI46_06225at 1332.783 kb on - strand, within IAI46_06225at 1333.039 kb on - strand, within IAI46_06225at 1333.200 kb on + strandat 1333.206 kb on + strandat 1333.206 kb on + strandat 1333.206 kb on + strandat 1333.284 kb on + strandat 1333.284 kb on + strandat 1333.284 kb on + strandat 1333.285 kb on - strandat 1333.285 kb on - strandat 1333.292 kb on + strandat 1333.293 kb on - strandat 1333.320 kb on - strandat 1333.320 kb on - strandat 1333.377 kb on + strandat 1333.378 kb on - strandat 1333.378 kb on - strandat 1333.383 kb on - strandat 1333.383 kb on - strandat 1333.383 kb on - strandat 1333.435 kb on - strandat 1333.468 kb on - strand, within IAI46_06230at 1333.537 kb on - strand, within IAI46_06230at 1333.537 kb on - strand, within IAI46_06230at 1333.672 kb on + strand, within IAI46_06230at 1333.846 kb on - strand, within IAI46_06230at 1333.902 kb on + strand, within IAI46_06230at 1333.915 kb on - strand, within IAI46_06230at 1333.932 kb on + strand, within IAI46_06230at 1333.980 kb on + strand, within IAI46_06230at 1333.980 kb on + strand, within IAI46_06230at 1333.980 kb on + strand, within IAI46_06230at 1334.014 kb on + strand, within IAI46_06230at 1334.025 kb on + strandat 1334.056 kb on - strandat 1334.109 kb on + strandat 1334.109 kb on + strandat 1334.110 kb on - strandat 1334.110 kb on - strandat 1334.110 kb on - strandat 1334.116 kb on - strandat 1334.186 kb on + strandat 1334.187 kb on - strandat 1334.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,331,465 + IAI46_06215 0.89 +0.4
1,331,532 + -0.9
1,331,532 + +0.2
1,331,532 + +1.0
1,331,532 + -1.0
1,331,560 + -0.0
1,331,673 + IAI46_06220 0.15 +0.2
1,331,866 + IAI46_06220 0.36 -0.7
1,331,866 + IAI46_06220 0.36 -1.2
1,331,866 + IAI46_06220 0.36 +1.3
1,331,958 + IAI46_06220 0.46 -0.2
1,331,959 - IAI46_06220 0.46 +1.3
1,332,249 + IAI46_06220 0.77 -0.2
1,332,261 + IAI46_06220 0.78 +0.2
1,332,288 + IAI46_06220 0.81 +0.3
1,332,288 + IAI46_06220 0.81 -0.3
1,332,334 + IAI46_06220 0.86 -2.1
1,332,335 - IAI46_06220 0.86 -0.9
1,332,603 - IAI46_06225 0.20 +0.4
1,332,689 + IAI46_06225 0.32 +1.2
1,332,689 + IAI46_06225 0.32 +0.2
1,332,690 - IAI46_06225 0.32 -2.4
1,332,690 - IAI46_06225 0.32 -0.4
1,332,690 - IAI46_06225 0.32 +1.9
1,332,704 + IAI46_06225 0.34 +1.1
1,332,705 - IAI46_06225 0.34 -0.5
1,332,783 - IAI46_06225 0.44 +0.2
1,332,783 - IAI46_06225 0.44 +0.2
1,333,039 - IAI46_06225 0.79 -0.0
1,333,200 + +0.4
1,333,206 + +0.3
1,333,206 + +0.3
1,333,206 + +0.3
1,333,284 + -0.7
1,333,284 + +0.7
1,333,284 + +1.1
1,333,285 - -0.8
1,333,285 - -0.3
1,333,292 + -0.4
1,333,293 - +0.5
1,333,320 - +0.4
1,333,320 - -2.5
1,333,377 + +0.7
1,333,378 - +0.7
1,333,378 - +0.5
1,333,383 - +0.5
1,333,383 - -0.1
1,333,383 - -0.1
1,333,435 - +0.8
1,333,468 - IAI46_06230 0.14 +0.5
1,333,537 - IAI46_06230 0.24 -0.1
1,333,537 - IAI46_06230 0.24 +0.9
1,333,672 + IAI46_06230 0.42 -0.9
1,333,846 - IAI46_06230 0.66 +0.4
1,333,902 + IAI46_06230 0.74 -0.2
1,333,915 - IAI46_06230 0.75 +0.6
1,333,932 + IAI46_06230 0.78 +0.4
1,333,980 + IAI46_06230 0.84 +0.2
1,333,980 + IAI46_06230 0.84 -0.3
1,333,980 + IAI46_06230 0.84 +0.7
1,334,014 + IAI46_06230 0.89 +0.3
1,334,025 + +0.4
1,334,056 - +1.9
1,334,109 + +0.6
1,334,109 + +0.2
1,334,110 - +0.4
1,334,110 - +0.1
1,334,110 - +0.5
1,334,116 - -0.2
1,334,186 + +0.4
1,334,187 - +0.0
1,334,190 - +0.5

Or see this region's nucleotide sequence