Strain Fitness in Serratia liquefaciens MT49 around IAI46_05980

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05975 and IAI46_05980 are separated by 117 nucleotidesIAI46_05980 and IAI46_05985 overlap by 1 nucleotidesIAI46_05985 and IAI46_05990 overlap by 1 nucleotides IAI46_05975: IAI46_05975 - pyrimidine-specific ribonucleoside hydrolase RihA, at 1,280,099 to 1,281,031 _05975 IAI46_05980: IAI46_05980 - amino acid ABC transporter ATP-binding protein, at 1,281,149 to 1,281,874 _05980 IAI46_05985: IAI46_05985 - glutamate/aspartate ABC transporter permease GltK, at 1,281,874 to 1,282,548 _05985 IAI46_05990: IAI46_05990 - amino acid ABC transporter permease, at 1,282,548 to 1,283,288 _05990 Position (kb) 1281 1282Strain fitness (log2 ratio) -2 -1 0 1at 1280.201 kb on - strand, within IAI46_05975at 1280.201 kb on - strand, within IAI46_05975at 1280.224 kb on + strand, within IAI46_05975at 1280.224 kb on + strand, within IAI46_05975at 1280.225 kb on - strand, within IAI46_05975at 1280.225 kb on - strand, within IAI46_05975at 1280.226 kb on + strand, within IAI46_05975at 1280.226 kb on + strand, within IAI46_05975at 1280.226 kb on + strand, within IAI46_05975at 1280.226 kb on + strand, within IAI46_05975at 1280.226 kb on + strand, within IAI46_05975at 1280.227 kb on - strand, within IAI46_05975at 1280.264 kb on - strand, within IAI46_05975at 1280.364 kb on + strand, within IAI46_05975at 1280.408 kb on + strand, within IAI46_05975at 1280.529 kb on + strand, within IAI46_05975at 1280.529 kb on + strand, within IAI46_05975at 1280.529 kb on + strand, within IAI46_05975at 1280.529 kb on + strand, within IAI46_05975at 1280.529 kb on + strand, within IAI46_05975at 1280.530 kb on - strand, within IAI46_05975at 1280.530 kb on - strand, within IAI46_05975at 1280.530 kb on - strand, within IAI46_05975at 1280.530 kb on - strand, within IAI46_05975at 1280.530 kb on - strand, within IAI46_05975at 1280.530 kb on - strand, within IAI46_05975at 1280.530 kb on - strand, within IAI46_05975at 1280.530 kb on - strand, within IAI46_05975at 1280.572 kb on + strand, within IAI46_05975at 1280.572 kb on + strand, within IAI46_05975at 1280.572 kb on + strand, within IAI46_05975at 1280.572 kb on + strand, within IAI46_05975at 1280.572 kb on + strand, within IAI46_05975at 1280.573 kb on - strand, within IAI46_05975at 1280.573 kb on - strand, within IAI46_05975at 1280.573 kb on - strand, within IAI46_05975at 1280.573 kb on - strand, within IAI46_05975at 1280.606 kb on - strand, within IAI46_05975at 1280.718 kb on - strand, within IAI46_05975at 1280.765 kb on - strand, within IAI46_05975at 1280.765 kb on - strand, within IAI46_05975at 1280.765 kb on - strand, within IAI46_05975at 1280.767 kb on + strand, within IAI46_05975at 1280.932 kb on + strand, within IAI46_05975at 1280.942 kb on + strandat 1280.943 kb on - strandat 1281.019 kb on + strandat 1281.019 kb on + strandat 1281.019 kb on + strandat 1281.036 kb on - strandat 1281.036 kb on - strandat 1281.044 kb on - strandat 1281.044 kb on - strandat 1281.095 kb on + strandat 1281.250 kb on + strand, within IAI46_05980at 1281.586 kb on + strand, within IAI46_05980at 1281.629 kb on + strand, within IAI46_05980at 1281.629 kb on + strand, within IAI46_05980at 1281.629 kb on + strand, within IAI46_05980at 1281.629 kb on + strand, within IAI46_05980at 1281.630 kb on - strand, within IAI46_05980at 1281.844 kb on - strandat 1281.844 kb on - strandat 1281.844 kb on - strandat 1281.850 kb on + strandat 1281.850 kb on + strandat 1281.850 kb on + strandat 1281.870 kb on - strandat 1281.896 kb on + strandat 1281.897 kb on - strandat 1281.897 kb on - strandat 1281.902 kb on - strandat 1282.028 kb on - strand, within IAI46_05985at 1282.028 kb on - strand, within IAI46_05985at 1282.031 kb on + strand, within IAI46_05985at 1282.032 kb on - strand, within IAI46_05985at 1282.032 kb on - strand, within IAI46_05985at 1282.032 kb on - strand, within IAI46_05985at 1282.058 kb on - strand, within IAI46_05985at 1282.058 kb on - strand, within IAI46_05985at 1282.058 kb on - strand, within IAI46_05985at 1282.058 kb on - strand, within IAI46_05985at 1282.215 kb on - strand, within IAI46_05985at 1282.217 kb on + strand, within IAI46_05985at 1282.217 kb on + strand, within IAI46_05985at 1282.217 kb on + strand, within IAI46_05985at 1282.218 kb on - strand, within IAI46_05985at 1282.266 kb on + strand, within IAI46_05985at 1282.288 kb on + strand, within IAI46_05985at 1282.289 kb on - strand, within IAI46_05985at 1282.300 kb on + strand, within IAI46_05985at 1282.304 kb on - strand, within IAI46_05985at 1282.322 kb on + strand, within IAI46_05985at 1282.322 kb on + strand, within IAI46_05985at 1282.322 kb on + strand, within IAI46_05985at 1282.322 kb on + strand, within IAI46_05985at 1282.323 kb on - strand, within IAI46_05985at 1282.373 kb on + strand, within IAI46_05985at 1282.446 kb on + strand, within IAI46_05985at 1282.505 kb on + strandat 1282.505 kb on + strandat 1282.506 kb on - strandat 1282.544 kb on + strandat 1282.549 kb on + strandat 1282.549 kb on + strandat 1282.549 kb on + strandat 1282.549 kb on + strandat 1282.602 kb on - strandat 1282.632 kb on - strand, within IAI46_05990at 1282.633 kb on + strand, within IAI46_05990at 1282.633 kb on + strand, within IAI46_05990at 1282.633 kb on + strand, within IAI46_05990at 1282.634 kb on - strand, within IAI46_05990at 1282.634 kb on - strand, within IAI46_05990at 1282.663 kb on + strand, within IAI46_05990at 1282.679 kb on - strand, within IAI46_05990at 1282.817 kb on - strand, within IAI46_05990at 1282.817 kb on - strand, within IAI46_05990

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,280,201 - IAI46_05975 0.11 +0.1
1,280,201 - IAI46_05975 0.11 -0.6
1,280,224 + IAI46_05975 0.13 +0.4
1,280,224 + IAI46_05975 0.13 -0.5
1,280,225 - IAI46_05975 0.14 +0.1
1,280,225 - IAI46_05975 0.14 -0.1
1,280,226 + IAI46_05975 0.14 -0.4
1,280,226 + IAI46_05975 0.14 +0.1
1,280,226 + IAI46_05975 0.14 +0.8
1,280,226 + IAI46_05975 0.14 +1.0
1,280,226 + IAI46_05975 0.14 +0.0
1,280,227 - IAI46_05975 0.14 -1.4
1,280,264 - IAI46_05975 0.18 -0.5
1,280,364 + IAI46_05975 0.28 +0.1
1,280,408 + IAI46_05975 0.33 +0.9
1,280,529 + IAI46_05975 0.46 +0.4
1,280,529 + IAI46_05975 0.46 +0.3
1,280,529 + IAI46_05975 0.46 +0.1
1,280,529 + IAI46_05975 0.46 +0.3
1,280,529 + IAI46_05975 0.46 +1.3
1,280,530 - IAI46_05975 0.46 +0.1
1,280,530 - IAI46_05975 0.46 +0.0
1,280,530 - IAI46_05975 0.46 +0.0
1,280,530 - IAI46_05975 0.46 -0.2
1,280,530 - IAI46_05975 0.46 +0.0
1,280,530 - IAI46_05975 0.46 -1.1
1,280,530 - IAI46_05975 0.46 +0.6
1,280,530 - IAI46_05975 0.46 +0.4
1,280,572 + IAI46_05975 0.51 -0.6
1,280,572 + IAI46_05975 0.51 -2.1
1,280,572 + IAI46_05975 0.51 -1.0
1,280,572 + IAI46_05975 0.51 +0.5
1,280,572 + IAI46_05975 0.51 +1.2
1,280,573 - IAI46_05975 0.51 -0.0
1,280,573 - IAI46_05975 0.51 +0.3
1,280,573 - IAI46_05975 0.51 -0.3
1,280,573 - IAI46_05975 0.51 +0.4
1,280,606 - IAI46_05975 0.54 -0.7
1,280,718 - IAI46_05975 0.66 +0.5
1,280,765 - IAI46_05975 0.71 +0.1
1,280,765 - IAI46_05975 0.71 -0.1
1,280,765 - IAI46_05975 0.71 -0.4
1,280,767 + IAI46_05975 0.72 -0.4
1,280,932 + IAI46_05975 0.89 +0.5
1,280,942 + -0.1
1,280,943 - +0.5
1,281,019 + -0.7
1,281,019 + +0.2
1,281,019 + -0.8
1,281,036 - +0.0
1,281,036 - -0.3
1,281,044 - +0.9
1,281,044 - -1.1
1,281,095 + -0.2
1,281,250 + IAI46_05980 0.14 -0.1
1,281,586 + IAI46_05980 0.60 -0.3
1,281,629 + IAI46_05980 0.66 +0.9
1,281,629 + IAI46_05980 0.66 +0.9
1,281,629 + IAI46_05980 0.66 +0.3
1,281,629 + IAI46_05980 0.66 +1.0
1,281,630 - IAI46_05980 0.66 -0.2
1,281,844 - -1.1
1,281,844 - +0.3
1,281,844 - -0.1
1,281,850 + -1.1
1,281,850 + +0.8
1,281,850 + -1.1
1,281,870 - -0.2
1,281,896 + +1.3
1,281,897 - +0.5
1,281,897 - -0.1
1,281,902 - +0.3
1,282,028 - IAI46_05985 0.23 +0.5
1,282,028 - IAI46_05985 0.23 +0.5
1,282,031 + IAI46_05985 0.23 +0.3
1,282,032 - IAI46_05985 0.23 +0.1
1,282,032 - IAI46_05985 0.23 +0.4
1,282,032 - IAI46_05985 0.23 -0.2
1,282,058 - IAI46_05985 0.27 +0.3
1,282,058 - IAI46_05985 0.27 +0.2
1,282,058 - IAI46_05985 0.27 +0.3
1,282,058 - IAI46_05985 0.27 -1.1
1,282,215 - IAI46_05985 0.51 -0.2
1,282,217 + IAI46_05985 0.51 -1.0
1,282,217 + IAI46_05985 0.51 +0.1
1,282,217 + IAI46_05985 0.51 -0.7
1,282,218 - IAI46_05985 0.51 +0.2
1,282,266 + IAI46_05985 0.58 +0.4
1,282,288 + IAI46_05985 0.61 -0.2
1,282,289 - IAI46_05985 0.61 +0.4
1,282,300 + IAI46_05985 0.63 +0.5
1,282,304 - IAI46_05985 0.64 -0.2
1,282,322 + IAI46_05985 0.66 -0.4
1,282,322 + IAI46_05985 0.66 +0.1
1,282,322 + IAI46_05985 0.66 -0.7
1,282,322 + IAI46_05985 0.66 -1.2
1,282,323 - IAI46_05985 0.67 +0.6
1,282,373 + IAI46_05985 0.74 +1.0
1,282,446 + IAI46_05985 0.85 +0.7
1,282,505 + -0.2
1,282,505 + +0.7
1,282,506 - +0.2
1,282,544 + +0.4
1,282,549 + +1.0
1,282,549 + +0.7
1,282,549 + +1.3
1,282,549 + +0.4
1,282,602 - +0.6
1,282,632 - IAI46_05990 0.11 +0.3
1,282,633 + IAI46_05990 0.11 +0.2
1,282,633 + IAI46_05990 0.11 +0.7
1,282,633 + IAI46_05990 0.11 -0.5
1,282,634 - IAI46_05990 0.12 -0.1
1,282,634 - IAI46_05990 0.12 +0.3
1,282,663 + IAI46_05990 0.16 -0.2
1,282,679 - IAI46_05990 0.18 +0.7
1,282,817 - IAI46_05990 0.36 +0.9
1,282,817 - IAI46_05990 0.36 +0.6

Or see this region's nucleotide sequence