Strain Fitness in Serratia liquefaciens MT49 around IAI46_05205

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05195 and IAI46_05200 are separated by 10 nucleotidesIAI46_05200 and IAI46_05205 are separated by 100 nucleotidesIAI46_05205 and IAI46_05210 are separated by 37 nucleotidesIAI46_05210 and IAI46_05215 are separated by 101 nucleotides IAI46_05195: IAI46_05195 - multidrug efflux transporter transcriptional repressor AcrR, at 1,117,376 to 1,118,065 _05195 IAI46_05200: IAI46_05200 - DsrE family protein, at 1,118,076 to 1,118,429 _05200 IAI46_05205: IAI46_05205 - mechanosensitive channel MscK, at 1,118,530 to 1,121,925 _05205 IAI46_05210: IAI46_05210 - pleiotropic regulatory protein RsmS, at 1,121,963 to 1,122,142 _05210 IAI46_05215: IAI46_05215 - primosomal replication protein, at 1,122,244 to 1,122,780 _05215 Position (kb) 1118 1119 1120 1121 1122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1117.537 kb on + strand, within IAI46_05195at 1117.569 kb on + strand, within IAI46_05195at 1117.584 kb on + strand, within IAI46_05195at 1117.585 kb on - strand, within IAI46_05195at 1117.600 kb on - strand, within IAI46_05195at 1117.600 kb on - strand, within IAI46_05195at 1117.605 kb on - strand, within IAI46_05195at 1117.605 kb on - strand, within IAI46_05195at 1117.605 kb on - strand, within IAI46_05195at 1117.616 kb on + strand, within IAI46_05195at 1117.617 kb on - strand, within IAI46_05195at 1117.653 kb on + strand, within IAI46_05195at 1117.658 kb on + strand, within IAI46_05195at 1117.659 kb on - strand, within IAI46_05195at 1117.661 kb on - strand, within IAI46_05195at 1117.677 kb on + strand, within IAI46_05195at 1117.678 kb on - strand, within IAI46_05195at 1117.721 kb on - strand, within IAI46_05195at 1117.776 kb on - strand, within IAI46_05195at 1117.787 kb on + strand, within IAI46_05195at 1117.820 kb on - strand, within IAI46_05195at 1117.820 kb on - strand, within IAI46_05195at 1117.848 kb on + strand, within IAI46_05195at 1117.849 kb on - strand, within IAI46_05195at 1117.852 kb on + strand, within IAI46_05195at 1117.852 kb on + strand, within IAI46_05195at 1117.867 kb on + strand, within IAI46_05195at 1117.868 kb on - strand, within IAI46_05195at 1117.884 kb on - strand, within IAI46_05195at 1118.046 kb on + strandat 1118.046 kb on + strandat 1118.047 kb on - strandat 1118.061 kb on + strandat 1118.061 kb on + strandat 1118.061 kb on + strandat 1118.062 kb on - strandat 1118.062 kb on - strandat 1118.113 kb on - strand, within IAI46_05200at 1118.250 kb on + strand, within IAI46_05200at 1118.251 kb on - strand, within IAI46_05200at 1118.251 kb on - strand, within IAI46_05200at 1118.416 kb on + strandat 1118.427 kb on + strandat 1118.427 kb on + strandat 1118.428 kb on - strandat 1118.428 kb on - strandat 1118.444 kb on + strandat 1118.445 kb on - strandat 1118.493 kb on + strandat 1118.493 kb on + strandat 1118.500 kb on + strandat 1118.510 kb on + strandat 1118.510 kb on + strandat 1118.543 kb on + strandat 1118.653 kb on + strandat 1118.653 kb on + strandat 1118.653 kb on + strandat 1118.654 kb on - strandat 1118.693 kb on + strandat 1118.693 kb on + strandat 1118.826 kb on + strandat 1119.013 kb on + strand, within IAI46_05205at 1119.014 kb on - strand, within IAI46_05205at 1119.014 kb on - strand, within IAI46_05205at 1119.015 kb on + strand, within IAI46_05205at 1119.070 kb on + strand, within IAI46_05205at 1119.070 kb on + strand, within IAI46_05205at 1119.070 kb on + strand, within IAI46_05205at 1119.071 kb on - strand, within IAI46_05205at 1119.197 kb on + strand, within IAI46_05205at 1119.198 kb on - strand, within IAI46_05205at 1119.198 kb on - strand, within IAI46_05205at 1119.198 kb on - strand, within IAI46_05205at 1119.231 kb on + strand, within IAI46_05205at 1119.232 kb on - strand, within IAI46_05205at 1119.232 kb on - strand, within IAI46_05205at 1119.265 kb on + strand, within IAI46_05205at 1119.265 kb on + strand, within IAI46_05205at 1119.266 kb on - strand, within IAI46_05205at 1119.267 kb on + strand, within IAI46_05205at 1119.280 kb on - strand, within IAI46_05205at 1119.483 kb on - strand, within IAI46_05205at 1119.483 kb on - strand, within IAI46_05205at 1119.543 kb on + strand, within IAI46_05205at 1119.544 kb on - strand, within IAI46_05205at 1119.602 kb on - strand, within IAI46_05205at 1119.646 kb on - strand, within IAI46_05205at 1119.657 kb on + strand, within IAI46_05205at 1119.687 kb on + strand, within IAI46_05205at 1119.728 kb on - strand, within IAI46_05205at 1119.728 kb on - strand, within IAI46_05205at 1119.728 kb on - strand, within IAI46_05205at 1119.830 kb on + strand, within IAI46_05205at 1119.846 kb on + strand, within IAI46_05205at 1120.123 kb on + strand, within IAI46_05205at 1120.124 kb on - strand, within IAI46_05205at 1120.124 kb on - strand, within IAI46_05205at 1120.133 kb on + strand, within IAI46_05205at 1120.175 kb on + strand, within IAI46_05205at 1120.277 kb on - strand, within IAI46_05205at 1120.297 kb on - strand, within IAI46_05205at 1120.297 kb on - strand, within IAI46_05205at 1120.360 kb on + strand, within IAI46_05205at 1120.360 kb on + strand, within IAI46_05205at 1120.430 kb on - strand, within IAI46_05205at 1120.430 kb on - strand, within IAI46_05205at 1120.430 kb on - strand, within IAI46_05205at 1120.467 kb on - strand, within IAI46_05205at 1120.574 kb on + strand, within IAI46_05205at 1120.574 kb on + strand, within IAI46_05205at 1120.701 kb on + strand, within IAI46_05205at 1120.741 kb on + strand, within IAI46_05205at 1120.741 kb on + strand, within IAI46_05205at 1120.742 kb on - strand, within IAI46_05205at 1120.762 kb on - strand, within IAI46_05205at 1120.768 kb on + strand, within IAI46_05205at 1120.956 kb on + strand, within IAI46_05205at 1120.956 kb on + strand, within IAI46_05205at 1120.956 kb on + strand, within IAI46_05205at 1120.956 kb on + strand, within IAI46_05205at 1121.028 kb on + strand, within IAI46_05205at 1121.028 kb on + strand, within IAI46_05205at 1121.028 kb on + strand, within IAI46_05205at 1121.028 kb on + strand, within IAI46_05205at 1121.028 kb on + strand, within IAI46_05205at 1121.041 kb on + strand, within IAI46_05205at 1121.041 kb on + strand, within IAI46_05205at 1121.041 kb on + strand, within IAI46_05205at 1121.041 kb on + strand, within IAI46_05205at 1121.042 kb on - strand, within IAI46_05205at 1121.128 kb on + strand, within IAI46_05205at 1121.129 kb on - strand, within IAI46_05205at 1121.129 kb on - strand, within IAI46_05205at 1121.129 kb on - strand, within IAI46_05205at 1121.223 kb on - strand, within IAI46_05205at 1121.223 kb on - strand, within IAI46_05205at 1121.223 kb on - strand, within IAI46_05205at 1121.231 kb on - strand, within IAI46_05205at 1121.231 kb on - strand, within IAI46_05205at 1121.415 kb on + strand, within IAI46_05205at 1121.415 kb on + strand, within IAI46_05205at 1121.416 kb on - strand, within IAI46_05205at 1121.416 kb on - strand, within IAI46_05205at 1121.418 kb on + strand, within IAI46_05205at 1121.418 kb on + strand, within IAI46_05205at 1121.418 kb on + strand, within IAI46_05205at 1121.509 kb on - strand, within IAI46_05205at 1121.570 kb on + strand, within IAI46_05205at 1121.579 kb on + strand, within IAI46_05205at 1121.580 kb on - strand, within IAI46_05205at 1121.590 kb on + strandat 1121.590 kb on + strandat 1121.733 kb on - strandat 1121.741 kb on + strandat 1121.742 kb on - strandat 1121.755 kb on + strandat 1121.756 kb on - strandat 1121.756 kb on - strandat 1121.756 kb on - strandat 1121.757 kb on + strandat 1121.757 kb on + strandat 1121.781 kb on + strandat 1121.839 kb on + strandat 1121.839 kb on + strandat 1121.839 kb on + strandat 1121.840 kb on - strandat 1121.889 kb on - strandat 1121.924 kb on - strandat 1121.924 kb on - strandat 1121.982 kb on + strand, within IAI46_05210at 1121.982 kb on + strand, within IAI46_05210at 1122.022 kb on - strand, within IAI46_05210at 1122.101 kb on + strand, within IAI46_05210at 1122.101 kb on + strand, within IAI46_05210at 1122.102 kb on - strand, within IAI46_05210at 1122.134 kb on + strandat 1122.142 kb on + strandat 1122.142 kb on + strandat 1122.143 kb on - strandat 1122.172 kb on + strandat 1122.190 kb on - strandat 1122.191 kb on + strandat 1122.191 kb on + strandat 1122.192 kb on - strandat 1122.192 kb on - strandat 1122.217 kb on + strandat 1122.270 kb on + strandat 1122.271 kb on - strandat 1122.271 kb on - strandat 1122.323 kb on - strand, within IAI46_05215at 1122.426 kb on - strand, within IAI46_05215at 1122.426 kb on - strand, within IAI46_05215at 1122.635 kb on + strand, within IAI46_05215at 1122.636 kb on - strand, within IAI46_05215at 1122.675 kb on + strand, within IAI46_05215at 1122.675 kb on + strand, within IAI46_05215at 1122.676 kb on - strand, within IAI46_05215at 1122.733 kb on + strandat 1122.800 kb on + strandat 1122.801 kb on - strandat 1122.850 kb on - strandat 1122.852 kb on - strandat 1122.852 kb on - strandat 1122.852 kb on - strandat 1122.852 kb on - strandat 1122.893 kb on + strandat 1122.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,117,537 + IAI46_05195 0.23 +0.6
1,117,569 + IAI46_05195 0.28 +1.8
1,117,584 + IAI46_05195 0.30 -0.6
1,117,585 - IAI46_05195 0.30 +0.4
1,117,600 - IAI46_05195 0.32 +0.3
1,117,600 - IAI46_05195 0.32 -0.5
1,117,605 - IAI46_05195 0.33 +0.3
1,117,605 - IAI46_05195 0.33 -1.0
1,117,605 - IAI46_05195 0.33 +1.0
1,117,616 + IAI46_05195 0.35 +0.6
1,117,617 - IAI46_05195 0.35 +0.8
1,117,653 + IAI46_05195 0.40 -0.3
1,117,658 + IAI46_05195 0.41 +1.3
1,117,659 - IAI46_05195 0.41 -0.4
1,117,661 - IAI46_05195 0.41 -0.7
1,117,677 + IAI46_05195 0.44 -0.2
1,117,678 - IAI46_05195 0.44 +1.0
1,117,721 - IAI46_05195 0.50 +0.5
1,117,776 - IAI46_05195 0.58 -0.3
1,117,787 + IAI46_05195 0.60 +0.4
1,117,820 - IAI46_05195 0.64 +0.8
1,117,820 - IAI46_05195 0.64 +0.3
1,117,848 + IAI46_05195 0.68 -0.2
1,117,849 - IAI46_05195 0.69 -0.9
1,117,852 + IAI46_05195 0.69 -1.0
1,117,852 + IAI46_05195 0.69 +0.2
1,117,867 + IAI46_05195 0.71 +0.2
1,117,868 - IAI46_05195 0.71 +0.4
1,117,884 - IAI46_05195 0.74 -0.1
1,118,046 + -0.3
1,118,046 + -0.0
1,118,047 - +0.6
1,118,061 + +0.4
1,118,061 + +0.5
1,118,061 + +0.5
1,118,062 - +1.5
1,118,062 - -0.3
1,118,113 - IAI46_05200 0.10 -0.0
1,118,250 + IAI46_05200 0.49 +0.2
1,118,251 - IAI46_05200 0.49 -0.5
1,118,251 - IAI46_05200 0.49 -1.2
1,118,416 + +1.0
1,118,427 + +1.2
1,118,427 + +0.1
1,118,428 - +0.5
1,118,428 - +0.4
1,118,444 + -0.1
1,118,445 - +0.3
1,118,493 + +0.3
1,118,493 + -0.2
1,118,500 + +0.1
1,118,510 + +1.8
1,118,510 + -0.4
1,118,543 + +1.5
1,118,653 + +0.7
1,118,653 + +0.2
1,118,653 + +0.4
1,118,654 - +0.7
1,118,693 + -0.5
1,118,693 + +1.0
1,118,826 + +0.1
1,119,013 + IAI46_05205 0.14 +1.2
1,119,014 - IAI46_05205 0.14 +1.0
1,119,014 - IAI46_05205 0.14 +0.4
1,119,015 + IAI46_05205 0.14 -0.6
1,119,070 + IAI46_05205 0.16 -0.5
1,119,070 + IAI46_05205 0.16 +0.1
1,119,070 + IAI46_05205 0.16 +0.5
1,119,071 - IAI46_05205 0.16 +0.4
1,119,197 + IAI46_05205 0.20 +0.9
1,119,198 - IAI46_05205 0.20 +0.8
1,119,198 - IAI46_05205 0.20 +0.5
1,119,198 - IAI46_05205 0.20 -1.2
1,119,231 + IAI46_05205 0.21 -0.1
1,119,232 - IAI46_05205 0.21 -0.0
1,119,232 - IAI46_05205 0.21 +1.2
1,119,265 + IAI46_05205 0.22 +0.1
1,119,265 + IAI46_05205 0.22 -0.0
1,119,266 - IAI46_05205 0.22 +0.4
1,119,267 + IAI46_05205 0.22 +0.1
1,119,280 - IAI46_05205 0.22 +0.1
1,119,483 - IAI46_05205 0.28 -0.7
1,119,483 - IAI46_05205 0.28 +0.7
1,119,543 + IAI46_05205 0.30 -0.2
1,119,544 - IAI46_05205 0.30 -0.5
1,119,602 - IAI46_05205 0.32 -0.3
1,119,646 - IAI46_05205 0.33 -0.2
1,119,657 + IAI46_05205 0.33 -0.3
1,119,687 + IAI46_05205 0.34 -0.6
1,119,728 - IAI46_05205 0.35 +0.5
1,119,728 - IAI46_05205 0.35 -0.9
1,119,728 - IAI46_05205 0.35 -0.4
1,119,830 + IAI46_05205 0.38 +0.3
1,119,846 + IAI46_05205 0.39 +0.1
1,120,123 + IAI46_05205 0.47 +0.2
1,120,124 - IAI46_05205 0.47 +0.2
1,120,124 - IAI46_05205 0.47 -0.2
1,120,133 + IAI46_05205 0.47 -0.2
1,120,175 + IAI46_05205 0.48 +0.1
1,120,277 - IAI46_05205 0.51 +0.9
1,120,297 - IAI46_05205 0.52 +0.6
1,120,297 - IAI46_05205 0.52 +0.7
1,120,360 + IAI46_05205 0.54 +1.1
1,120,360 + IAI46_05205 0.54 +0.1
1,120,430 - IAI46_05205 0.56 +0.7
1,120,430 - IAI46_05205 0.56 +0.1
1,120,430 - IAI46_05205 0.56 +0.5
1,120,467 - IAI46_05205 0.57 +0.5
1,120,574 + IAI46_05205 0.60 +0.4
1,120,574 + IAI46_05205 0.60 +2.1
1,120,701 + IAI46_05205 0.64 -0.5
1,120,741 + IAI46_05205 0.65 -0.5
1,120,741 + IAI46_05205 0.65 +0.2
1,120,742 - IAI46_05205 0.65 +0.5
1,120,762 - IAI46_05205 0.66 -0.0
1,120,768 + IAI46_05205 0.66 +0.5
1,120,956 + IAI46_05205 0.71 -0.1
1,120,956 + IAI46_05205 0.71 +0.6
1,120,956 + IAI46_05205 0.71 +0.6
1,120,956 + IAI46_05205 0.71 +0.4
1,121,028 + IAI46_05205 0.74 +0.6
1,121,028 + IAI46_05205 0.74 -0.2
1,121,028 + IAI46_05205 0.74 -0.4
1,121,028 + IAI46_05205 0.74 -0.6
1,121,028 + IAI46_05205 0.74 -2.1
1,121,041 + IAI46_05205 0.74 +0.8
1,121,041 + IAI46_05205 0.74 -0.3
1,121,041 + IAI46_05205 0.74 -0.1
1,121,041 + IAI46_05205 0.74 +1.7
1,121,042 - IAI46_05205 0.74 -0.2
1,121,128 + IAI46_05205 0.77 +0.9
1,121,129 - IAI46_05205 0.77 -1.8
1,121,129 - IAI46_05205 0.77 +0.3
1,121,129 - IAI46_05205 0.77 +0.9
1,121,223 - IAI46_05205 0.79 +0.2
1,121,223 - IAI46_05205 0.79 +0.3
1,121,223 - IAI46_05205 0.79 -0.3
1,121,231 - IAI46_05205 0.80 -1.3
1,121,231 - IAI46_05205 0.80 -1.4
1,121,415 + IAI46_05205 0.85 +1.0
1,121,415 + IAI46_05205 0.85 -0.0
1,121,416 - IAI46_05205 0.85 +0.7
1,121,416 - IAI46_05205 0.85 +0.0
1,121,418 + IAI46_05205 0.85 +1.3
1,121,418 + IAI46_05205 0.85 -1.7
1,121,418 + IAI46_05205 0.85 +0.1
1,121,509 - IAI46_05205 0.88 +0.2
1,121,570 + IAI46_05205 0.90 +0.6
1,121,579 + IAI46_05205 0.90 +0.3
1,121,580 - IAI46_05205 0.90 +0.8
1,121,590 + +1.1
1,121,590 + -0.9
1,121,733 - -0.9
1,121,741 + +0.4
1,121,742 - +0.7
1,121,755 + -1.8
1,121,756 - +0.5
1,121,756 - -0.3
1,121,756 - +0.6
1,121,757 + +0.1
1,121,757 + +0.3
1,121,781 + +0.5
1,121,839 + +0.8
1,121,839 + -0.4
1,121,839 + +0.7
1,121,840 - +0.1
1,121,889 - +0.4
1,121,924 - +1.2
1,121,924 - +0.1
1,121,982 + IAI46_05210 0.11 +0.0
1,121,982 + IAI46_05210 0.11 -0.4
1,122,022 - IAI46_05210 0.33 -0.6
1,122,101 + IAI46_05210 0.77 +1.0
1,122,101 + IAI46_05210 0.77 -1.5
1,122,102 - IAI46_05210 0.77 -0.7
1,122,134 + -0.3
1,122,142 + +0.4
1,122,142 + +0.4
1,122,143 - +0.5
1,122,172 + -1.0
1,122,190 - -0.6
1,122,191 + +0.3
1,122,191 + +0.5
1,122,192 - +0.2
1,122,192 - +0.4
1,122,217 + -0.6
1,122,270 + -0.0
1,122,271 - -0.8
1,122,271 - +0.5
1,122,323 - IAI46_05215 0.15 -0.3
1,122,426 - IAI46_05215 0.34 +1.4
1,122,426 - IAI46_05215 0.34 +0.3
1,122,635 + IAI46_05215 0.73 -0.7
1,122,636 - IAI46_05215 0.73 -0.6
1,122,675 + IAI46_05215 0.80 -0.0
1,122,675 + IAI46_05215 0.80 +0.2
1,122,676 - IAI46_05215 0.80 +0.2
1,122,733 + +0.4
1,122,800 + -0.1
1,122,801 - -1.1
1,122,850 - -0.5
1,122,852 - -3.2
1,122,852 - -0.2
1,122,852 - -0.5
1,122,852 - +1.4
1,122,893 + +0.3
1,122,894 - +0.4

Or see this region's nucleotide sequence