Strain Fitness in Serratia liquefaciens MT49 around IAI46_05145

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05135 and IAI46_05140 are separated by 76 nucleotidesIAI46_05140 and IAI46_05145 are separated by 55 nucleotidesIAI46_05145 and IAI46_05150 are separated by 162 nucleotidesIAI46_05150 and IAI46_05155 are separated by 328 nucleotidesIAI46_05155 and IAI46_05160 overlap by 4 nucleotides IAI46_05135: IAI46_05135 - LysR family transcriptional regulator, at 1,107,116 to 1,108,048 _05135 IAI46_05140: IAI46_05140 - hemolysin expression modulator Hha, at 1,108,125 to 1,108,328 _05140 IAI46_05145: IAI46_05145 - Hha toxicity modulator TomB, at 1,108,384 to 1,108,752 _05145 IAI46_05150: IAI46_05150 - hypothetical protein, at 1,108,915 to 1,109,241 _05150 IAI46_05155: IAI46_05155 - hypothetical protein, at 1,109,570 to 1,109,716 _05155 IAI46_05160: IAI46_05160 - ABC transporter ATP-binding protein, at 1,109,713 to 1,110,435 _05160 Position (kb) 1108 1109Strain fitness (log2 ratio) -1 0 1 2at 1107.389 kb on - strand, within IAI46_05135at 1107.400 kb on + strand, within IAI46_05135at 1107.400 kb on + strand, within IAI46_05135at 1107.400 kb on + strand, within IAI46_05135at 1107.401 kb on - strand, within IAI46_05135at 1107.441 kb on + strand, within IAI46_05135at 1107.441 kb on + strand, within IAI46_05135at 1107.442 kb on - strand, within IAI46_05135at 1107.532 kb on + strand, within IAI46_05135at 1107.533 kb on - strand, within IAI46_05135at 1107.533 kb on - strand, within IAI46_05135at 1107.555 kb on + strand, within IAI46_05135at 1107.556 kb on - strand, within IAI46_05135at 1107.556 kb on - strand, within IAI46_05135at 1107.581 kb on - strand, within IAI46_05135at 1107.595 kb on + strand, within IAI46_05135at 1107.622 kb on - strand, within IAI46_05135at 1107.622 kb on - strand, within IAI46_05135at 1107.623 kb on + strand, within IAI46_05135at 1107.623 kb on + strand, within IAI46_05135at 1107.624 kb on - strand, within IAI46_05135at 1107.624 kb on - strand, within IAI46_05135at 1107.709 kb on - strand, within IAI46_05135at 1107.721 kb on + strand, within IAI46_05135at 1107.722 kb on - strand, within IAI46_05135at 1107.804 kb on - strand, within IAI46_05135at 1107.830 kb on + strand, within IAI46_05135at 1107.840 kb on + strand, within IAI46_05135at 1107.840 kb on + strand, within IAI46_05135at 1107.863 kb on - strand, within IAI46_05135at 1107.954 kb on + strand, within IAI46_05135at 1107.987 kb on + strandat 1108.014 kb on + strandat 1108.047 kb on - strandat 1108.092 kb on + strandat 1108.166 kb on - strand, within IAI46_05140at 1108.173 kb on - strand, within IAI46_05140at 1108.296 kb on - strand, within IAI46_05140at 1108.296 kb on - strand, within IAI46_05140at 1108.359 kb on - strandat 1108.359 kb on - strandat 1108.364 kb on - strandat 1108.433 kb on - strand, within IAI46_05145at 1108.479 kb on + strand, within IAI46_05145at 1108.484 kb on + strand, within IAI46_05145at 1108.502 kb on + strand, within IAI46_05145at 1108.503 kb on - strand, within IAI46_05145at 1108.507 kb on - strand, within IAI46_05145at 1108.507 kb on - strand, within IAI46_05145at 1108.518 kb on - strand, within IAI46_05145at 1108.561 kb on - strand, within IAI46_05145at 1108.566 kb on + strand, within IAI46_05145at 1108.590 kb on + strand, within IAI46_05145at 1108.722 kb on + strandat 1108.743 kb on - strandat 1108.752 kb on + strandat 1108.753 kb on - strandat 1108.789 kb on - strandat 1108.932 kb on + strandat 1108.948 kb on - strand, within IAI46_05150at 1109.009 kb on + strand, within IAI46_05150at 1109.010 kb on - strand, within IAI46_05150at 1109.010 kb on - strand, within IAI46_05150at 1109.056 kb on - strand, within IAI46_05150at 1109.064 kb on - strand, within IAI46_05150at 1109.064 kb on - strand, within IAI46_05150at 1109.095 kb on - strand, within IAI46_05150at 1109.100 kb on + strand, within IAI46_05150at 1109.114 kb on - strand, within IAI46_05150at 1109.127 kb on + strand, within IAI46_05150at 1109.129 kb on + strand, within IAI46_05150at 1109.130 kb on - strand, within IAI46_05150at 1109.130 kb on - strand, within IAI46_05150at 1109.194 kb on - strand, within IAI46_05150at 1109.226 kb on - strandat 1109.236 kb on + strandat 1109.236 kb on + strandat 1109.236 kb on + strandat 1109.237 kb on - strandat 1109.237 kb on - strandat 1109.237 kb on - strandat 1109.249 kb on + strandat 1109.250 kb on - strandat 1109.253 kb on + strandat 1109.254 kb on - strandat 1109.254 kb on - strandat 1109.261 kb on - strandat 1109.261 kb on - strandat 1109.294 kb on + strandat 1109.307 kb on + strandat 1109.325 kb on - strandat 1109.364 kb on + strandat 1109.364 kb on + strandat 1109.389 kb on + strandat 1109.390 kb on - strandat 1109.408 kb on + strandat 1109.409 kb on - strandat 1109.409 kb on - strandat 1109.409 kb on - strandat 1109.409 kb on - strandat 1109.411 kb on - strandat 1109.472 kb on - strandat 1109.472 kb on - strandat 1109.472 kb on - strandat 1109.472 kb on - strandat 1109.478 kb on - strandat 1109.492 kb on + strandat 1109.493 kb on - strandat 1109.536 kb on + strandat 1109.538 kb on + strandat 1109.539 kb on - strandat 1109.677 kb on - strand, within IAI46_05155at 1109.718 kb on - strandat 1109.723 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,107,389 - IAI46_05135 0.29 +0.6
1,107,400 + IAI46_05135 0.30 +0.9
1,107,400 + IAI46_05135 0.30 +0.3
1,107,400 + IAI46_05135 0.30 -0.8
1,107,401 - IAI46_05135 0.31 -0.4
1,107,441 + IAI46_05135 0.35 -0.4
1,107,441 + IAI46_05135 0.35 -0.3
1,107,442 - IAI46_05135 0.35 +0.9
1,107,532 + IAI46_05135 0.45 -0.3
1,107,533 - IAI46_05135 0.45 +1.0
1,107,533 - IAI46_05135 0.45 +2.0
1,107,555 + IAI46_05135 0.47 -0.6
1,107,556 - IAI46_05135 0.47 -0.4
1,107,556 - IAI46_05135 0.47 -0.5
1,107,581 - IAI46_05135 0.50 +1.9
1,107,595 + IAI46_05135 0.51 +0.3
1,107,622 - IAI46_05135 0.54 +0.9
1,107,622 - IAI46_05135 0.54 -0.1
1,107,623 + IAI46_05135 0.54 +0.2
1,107,623 + IAI46_05135 0.54 +0.0
1,107,624 - IAI46_05135 0.54 -0.3
1,107,624 - IAI46_05135 0.54 -1.4
1,107,709 - IAI46_05135 0.64 +1.0
1,107,721 + IAI46_05135 0.65 +0.3
1,107,722 - IAI46_05135 0.65 -0.4
1,107,804 - IAI46_05135 0.74 -0.5
1,107,830 + IAI46_05135 0.77 +0.3
1,107,840 + IAI46_05135 0.78 +0.3
1,107,840 + IAI46_05135 0.78 +0.7
1,107,863 - IAI46_05135 0.80 -0.3
1,107,954 + IAI46_05135 0.90 -0.2
1,107,987 + +0.8
1,108,014 + -0.5
1,108,047 - +0.2
1,108,092 + -0.3
1,108,166 - IAI46_05140 0.20 -0.6
1,108,173 - IAI46_05140 0.24 -0.2
1,108,296 - IAI46_05140 0.84 +0.4
1,108,296 - IAI46_05140 0.84 +0.1
1,108,359 - +0.5
1,108,359 - -1.1
1,108,364 - -0.2
1,108,433 - IAI46_05145 0.13 +0.4
1,108,479 + IAI46_05145 0.26 +0.5
1,108,484 + IAI46_05145 0.27 +0.7
1,108,502 + IAI46_05145 0.32 +0.1
1,108,503 - IAI46_05145 0.32 +0.1
1,108,507 - IAI46_05145 0.33 -0.0
1,108,507 - IAI46_05145 0.33 +0.9
1,108,518 - IAI46_05145 0.36 -0.8
1,108,561 - IAI46_05145 0.48 +0.1
1,108,566 + IAI46_05145 0.49 +0.1
1,108,590 + IAI46_05145 0.56 -0.4
1,108,722 + +0.9
1,108,743 - +0.7
1,108,752 + +1.2
1,108,753 - +0.8
1,108,789 - +0.2
1,108,932 + +0.2
1,108,948 - IAI46_05150 0.10 +0.2
1,109,009 + IAI46_05150 0.29 -0.1
1,109,010 - IAI46_05150 0.29 +0.7
1,109,010 - IAI46_05150 0.29 -0.1
1,109,056 - IAI46_05150 0.43 +0.3
1,109,064 - IAI46_05150 0.46 +0.5
1,109,064 - IAI46_05150 0.46 +0.2
1,109,095 - IAI46_05150 0.55 -0.0
1,109,100 + IAI46_05150 0.57 +0.5
1,109,114 - IAI46_05150 0.61 -1.2
1,109,127 + IAI46_05150 0.65 +0.5
1,109,129 + IAI46_05150 0.65 -0.4
1,109,130 - IAI46_05150 0.66 +0.4
1,109,130 - IAI46_05150 0.66 -0.8
1,109,194 - IAI46_05150 0.85 +0.4
1,109,226 - +0.9
1,109,236 + +1.4
1,109,236 + +0.5
1,109,236 + -0.8
1,109,237 - -0.2
1,109,237 - +0.1
1,109,237 - +0.1
1,109,249 + +0.3
1,109,250 - +0.6
1,109,253 + +0.9
1,109,254 - +0.6
1,109,254 - +1.5
1,109,261 - -0.1
1,109,261 - +0.5
1,109,294 + -1.6
1,109,307 + +0.3
1,109,325 - +0.7
1,109,364 + +0.2
1,109,364 + -0.7
1,109,389 + -0.1
1,109,390 - +1.7
1,109,408 + -0.2
1,109,409 - +2.0
1,109,409 - +0.2
1,109,409 - +1.6
1,109,409 - -0.4
1,109,411 - -0.5
1,109,472 - +2.6
1,109,472 - -0.1
1,109,472 - -0.7
1,109,472 - +1.2
1,109,478 - -0.0
1,109,492 + +0.4
1,109,493 - +0.3
1,109,536 + +0.5
1,109,538 + +0.4
1,109,539 - +0.2
1,109,677 - IAI46_05155 0.73 -0.7
1,109,718 - +0.2
1,109,723 + +0.3

Or see this region's nucleotide sequence