Strain Fitness in Serratia liquefaciens MT49 around IAI46_04955

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04950 and IAI46_04955 are separated by 167 nucleotidesIAI46_04955 and IAI46_04960 are separated by 201 nucleotides IAI46_04950: IAI46_04950 - 2-dehydropantoate 2-reductase, at 1,065,986 to 1,066,897 _04950 IAI46_04955: IAI46_04955 - YajQ family cyclic di-GMP-binding protein, at 1,067,065 to 1,067,556 _04955 IAI46_04960: IAI46_04960 - MFS transporter, at 1,067,758 to 1,069,122 _04960 Position (kb) 1067 1068Strain fitness (log2 ratio) -2 -1 0 1at 1066.110 kb on + strand, within IAI46_04950at 1066.123 kb on - strand, within IAI46_04950at 1066.123 kb on - strand, within IAI46_04950at 1066.209 kb on + strand, within IAI46_04950at 1066.209 kb on + strand, within IAI46_04950at 1066.210 kb on - strand, within IAI46_04950at 1066.210 kb on - strand, within IAI46_04950at 1066.234 kb on + strand, within IAI46_04950at 1066.234 kb on + strand, within IAI46_04950at 1066.234 kb on + strand, within IAI46_04950at 1066.235 kb on - strand, within IAI46_04950at 1066.235 kb on - strand, within IAI46_04950at 1066.235 kb on - strand, within IAI46_04950at 1066.239 kb on + strand, within IAI46_04950at 1066.240 kb on - strand, within IAI46_04950at 1066.327 kb on + strand, within IAI46_04950at 1066.327 kb on + strand, within IAI46_04950at 1066.329 kb on + strand, within IAI46_04950at 1066.329 kb on + strand, within IAI46_04950at 1066.330 kb on - strand, within IAI46_04950at 1066.330 kb on - strand, within IAI46_04950at 1066.330 kb on - strand, within IAI46_04950at 1066.348 kb on + strand, within IAI46_04950at 1066.349 kb on - strand, within IAI46_04950at 1066.510 kb on + strand, within IAI46_04950at 1066.513 kb on + strand, within IAI46_04950at 1066.513 kb on + strand, within IAI46_04950at 1066.513 kb on + strand, within IAI46_04950at 1066.513 kb on + strand, within IAI46_04950at 1066.514 kb on - strand, within IAI46_04950at 1066.514 kb on - strand, within IAI46_04950at 1066.685 kb on + strand, within IAI46_04950at 1066.809 kb on - strandat 1066.820 kb on + strandat 1066.820 kb on + strandat 1066.821 kb on - strandat 1066.840 kb on - strandat 1066.890 kb on - strandat 1066.890 kb on - strandat 1066.890 kb on - strandat 1066.933 kb on - strandat 1066.936 kb on + strandat 1066.941 kb on + strandat 1066.947 kb on + strandat 1066.997 kb on + strandat 1067.039 kb on + strandat 1067.039 kb on + strandat 1067.064 kb on + strandat 1067.064 kb on + strandat 1067.064 kb on + strandat 1067.097 kb on + strandat 1067.097 kb on + strandat 1067.112 kb on + strandat 1067.113 kb on - strandat 1067.253 kb on + strand, within IAI46_04955at 1067.367 kb on + strand, within IAI46_04955at 1067.466 kb on + strand, within IAI46_04955at 1067.575 kb on + strandat 1067.576 kb on - strandat 1067.576 kb on - strandat 1067.577 kb on + strandat 1067.578 kb on - strandat 1067.704 kb on + strandat 1067.760 kb on - strandat 1067.819 kb on - strandat 1067.823 kb on - strandat 1067.860 kb on + strandat 1067.861 kb on - strandat 1067.925 kb on + strand, within IAI46_04960at 1067.925 kb on + strand, within IAI46_04960at 1067.925 kb on + strand, within IAI46_04960at 1067.926 kb on - strand, within IAI46_04960at 1067.926 kb on - strand, within IAI46_04960at 1067.926 kb on - strand, within IAI46_04960at 1067.946 kb on - strand, within IAI46_04960at 1067.964 kb on + strand, within IAI46_04960at 1067.964 kb on + strand, within IAI46_04960at 1067.965 kb on - strand, within IAI46_04960at 1067.976 kb on + strand, within IAI46_04960at 1068.095 kb on + strand, within IAI46_04960at 1068.095 kb on + strand, within IAI46_04960at 1068.118 kb on - strand, within IAI46_04960at 1068.119 kb on + strand, within IAI46_04960at 1068.120 kb on - strand, within IAI46_04960at 1068.138 kb on + strand, within IAI46_04960at 1068.208 kb on - strand, within IAI46_04960at 1068.262 kb on + strand, within IAI46_04960at 1068.279 kb on + strand, within IAI46_04960at 1068.280 kb on - strand, within IAI46_04960at 1068.314 kb on + strand, within IAI46_04960at 1068.314 kb on + strand, within IAI46_04960at 1068.314 kb on + strand, within IAI46_04960at 1068.315 kb on - strand, within IAI46_04960at 1068.321 kb on + strand, within IAI46_04960at 1068.365 kb on + strand, within IAI46_04960at 1068.365 kb on + strand, within IAI46_04960at 1068.365 kb on + strand, within IAI46_04960at 1068.366 kb on - strand, within IAI46_04960at 1068.447 kb on + strand, within IAI46_04960at 1068.447 kb on + strand, within IAI46_04960at 1068.448 kb on - strand, within IAI46_04960at 1068.448 kb on - strand, within IAI46_04960at 1068.448 kb on - strand, within IAI46_04960at 1068.523 kb on + strand, within IAI46_04960at 1068.523 kb on + strand, within IAI46_04960at 1068.523 kb on + strand, within IAI46_04960at 1068.523 kb on + strand, within IAI46_04960

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,066,110 + IAI46_04950 0.14 +0.0
1,066,123 - IAI46_04950 0.15 -0.3
1,066,123 - IAI46_04950 0.15 -0.0
1,066,209 + IAI46_04950 0.24 -0.5
1,066,209 + IAI46_04950 0.24 +0.6
1,066,210 - IAI46_04950 0.25 +0.4
1,066,210 - IAI46_04950 0.25 +0.3
1,066,234 + IAI46_04950 0.27 +0.2
1,066,234 + IAI46_04950 0.27 +0.1
1,066,234 + IAI46_04950 0.27 -1.4
1,066,235 - IAI46_04950 0.27 +0.6
1,066,235 - IAI46_04950 0.27 +1.3
1,066,235 - IAI46_04950 0.27 -0.2
1,066,239 + IAI46_04950 0.28 +0.6
1,066,240 - IAI46_04950 0.28 +0.6
1,066,327 + IAI46_04950 0.37 -1.0
1,066,327 + IAI46_04950 0.37 +0.4
1,066,329 + IAI46_04950 0.38 -0.9
1,066,329 + IAI46_04950 0.38 +0.4
1,066,330 - IAI46_04950 0.38 -0.7
1,066,330 - IAI46_04950 0.38 -0.2
1,066,330 - IAI46_04950 0.38 +0.9
1,066,348 + IAI46_04950 0.40 +0.9
1,066,349 - IAI46_04950 0.40 -0.8
1,066,510 + IAI46_04950 0.57 +0.4
1,066,513 + IAI46_04950 0.58 +0.6
1,066,513 + IAI46_04950 0.58 +0.3
1,066,513 + IAI46_04950 0.58 +0.6
1,066,513 + IAI46_04950 0.58 +0.3
1,066,514 - IAI46_04950 0.58 -0.8
1,066,514 - IAI46_04950 0.58 -0.2
1,066,685 + IAI46_04950 0.77 +0.9
1,066,809 - +0.5
1,066,820 + +0.5
1,066,820 + -0.3
1,066,821 - +0.5
1,066,840 - -0.2
1,066,890 - -0.1
1,066,890 - -0.2
1,066,890 - +0.2
1,066,933 - +0.3
1,066,936 + -0.7
1,066,941 + +0.2
1,066,947 + +0.2
1,066,997 + +0.2
1,067,039 + +0.7
1,067,039 + +0.1
1,067,064 + -0.4
1,067,064 + -1.6
1,067,064 + +0.3
1,067,097 + -0.5
1,067,097 + +0.5
1,067,112 + -0.2
1,067,113 - +0.1
1,067,253 + IAI46_04955 0.38 -0.8
1,067,367 + IAI46_04955 0.61 +0.0
1,067,466 + IAI46_04955 0.82 -0.9
1,067,575 + +0.4
1,067,576 - +1.0
1,067,576 - +0.1
1,067,577 + -0.4
1,067,578 - +0.6
1,067,704 + +0.6
1,067,760 - -0.0
1,067,819 - -0.5
1,067,823 - +0.2
1,067,860 + +0.6
1,067,861 - -2.2
1,067,925 + IAI46_04960 0.12 +1.1
1,067,925 + IAI46_04960 0.12 +0.2
1,067,925 + IAI46_04960 0.12 +0.3
1,067,926 - IAI46_04960 0.12 +0.0
1,067,926 - IAI46_04960 0.12 -0.4
1,067,926 - IAI46_04960 0.12 -0.1
1,067,946 - IAI46_04960 0.14 +0.3
1,067,964 + IAI46_04960 0.15 +0.2
1,067,964 + IAI46_04960 0.15 +1.0
1,067,965 - IAI46_04960 0.15 +1.3
1,067,976 + IAI46_04960 0.16 +0.2
1,068,095 + IAI46_04960 0.25 +1.1
1,068,095 + IAI46_04960 0.25 +0.9
1,068,118 - IAI46_04960 0.26 -0.0
1,068,119 + IAI46_04960 0.26 +0.1
1,068,120 - IAI46_04960 0.27 +0.7
1,068,138 + IAI46_04960 0.28 +1.2
1,068,208 - IAI46_04960 0.33 +0.4
1,068,262 + IAI46_04960 0.37 +0.8
1,068,279 + IAI46_04960 0.38 +0.3
1,068,280 - IAI46_04960 0.38 -0.2
1,068,314 + IAI46_04960 0.41 +0.2
1,068,314 + IAI46_04960 0.41 -0.0
1,068,314 + IAI46_04960 0.41 +1.1
1,068,315 - IAI46_04960 0.41 +0.9
1,068,321 + IAI46_04960 0.41 -0.3
1,068,365 + IAI46_04960 0.44 +1.1
1,068,365 + IAI46_04960 0.44 +0.2
1,068,365 + IAI46_04960 0.44 +0.2
1,068,366 - IAI46_04960 0.45 +0.6
1,068,447 + IAI46_04960 0.50 -0.4
1,068,447 + IAI46_04960 0.50 -0.6
1,068,448 - IAI46_04960 0.51 +0.6
1,068,448 - IAI46_04960 0.51 +1.3
1,068,448 - IAI46_04960 0.51 -0.2
1,068,523 + IAI46_04960 0.56 -1.0
1,068,523 + IAI46_04960 0.56 +0.3
1,068,523 + IAI46_04960 0.56 +0.5
1,068,523 + IAI46_04960 0.56 +0.6

Or see this region's nucleotide sequence