Strain Fitness in Serratia liquefaciens MT49 around IAI46_04765

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04760 and IAI46_04765 are separated by 195 nucleotidesIAI46_04765 and IAI46_04770 overlap by 4 nucleotides IAI46_04760: IAI46_04760 - PRD domain-containing protein, at 1,020,187 to 1,021,029 _04760 IAI46_04765: IAI46_04765 - exonuclease subunit SbcC, at 1,021,225 to 1,024,476 _04765 IAI46_04770: IAI46_04770 - exonuclease subunit SbcD, at 1,024,473 to 1,025,705 _04770 Position (kb) 1021 1022 1023 1024 1025Strain fitness (log2 ratio) -2 -1 0 1at 1020.344 kb on + strand, within IAI46_04760at 1020.428 kb on + strand, within IAI46_04760at 1020.428 kb on + strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.478 kb on - strand, within IAI46_04760at 1020.507 kb on + strand, within IAI46_04760at 1020.507 kb on + strand, within IAI46_04760at 1020.507 kb on + strand, within IAI46_04760at 1020.508 kb on - strand, within IAI46_04760at 1020.508 kb on - strand, within IAI46_04760at 1020.748 kb on - strand, within IAI46_04760at 1020.748 kb on - strand, within IAI46_04760at 1020.749 kb on + strand, within IAI46_04760at 1020.750 kb on - strand, within IAI46_04760at 1020.750 kb on - strand, within IAI46_04760at 1020.759 kb on + strand, within IAI46_04760at 1020.759 kb on + strand, within IAI46_04760at 1020.759 kb on + strand, within IAI46_04760at 1020.760 kb on - strand, within IAI46_04760at 1020.760 kb on - strand, within IAI46_04760at 1020.852 kb on + strand, within IAI46_04760at 1021.005 kb on + strandat 1021.008 kb on + strandat 1021.009 kb on - strandat 1021.025 kb on + strandat 1021.112 kb on - strandat 1021.112 kb on - strandat 1021.114 kb on - strandat 1021.118 kb on - strandat 1021.122 kb on + strandat 1021.122 kb on + strandat 1021.123 kb on - strandat 1021.140 kb on + strandat 1021.141 kb on - strandat 1021.148 kb on + strandat 1021.148 kb on + strandat 1021.149 kb on - strandat 1021.149 kb on - strandat 1021.226 kb on + strandat 1021.227 kb on - strandat 1021.227 kb on - strandat 1021.227 kb on - strandat 1021.287 kb on + strandat 1021.287 kb on + strandat 1021.411 kb on - strandat 1021.537 kb on + strandat 1021.646 kb on + strand, within IAI46_04765at 1021.646 kb on + strand, within IAI46_04765at 1021.683 kb on + strand, within IAI46_04765at 1021.692 kb on + strand, within IAI46_04765at 1021.727 kb on + strand, within IAI46_04765at 1021.743 kb on - strand, within IAI46_04765at 1022.172 kb on + strand, within IAI46_04765at 1022.236 kb on + strand, within IAI46_04765at 1022.236 kb on + strand, within IAI46_04765at 1022.236 kb on + strand, within IAI46_04765at 1022.236 kb on + strand, within IAI46_04765at 1022.236 kb on + strand, within IAI46_04765at 1022.236 kb on + strand, within IAI46_04765at 1022.237 kb on - strand, within IAI46_04765at 1022.237 kb on - strand, within IAI46_04765at 1022.238 kb on + strand, within IAI46_04765at 1022.238 kb on + strand, within IAI46_04765at 1022.239 kb on - strand, within IAI46_04765at 1022.325 kb on + strand, within IAI46_04765at 1022.325 kb on + strand, within IAI46_04765at 1022.325 kb on + strand, within IAI46_04765at 1022.507 kb on - strand, within IAI46_04765at 1022.507 kb on - strand, within IAI46_04765at 1022.821 kb on + strand, within IAI46_04765at 1022.831 kb on + strand, within IAI46_04765at 1022.831 kb on + strand, within IAI46_04765at 1022.832 kb on - strand, within IAI46_04765at 1022.832 kb on - strand, within IAI46_04765at 1022.950 kb on + strand, within IAI46_04765at 1023.106 kb on + strand, within IAI46_04765at 1023.106 kb on + strand, within IAI46_04765at 1023.107 kb on - strand, within IAI46_04765at 1023.107 kb on - strand, within IAI46_04765at 1023.320 kb on + strand, within IAI46_04765at 1023.321 kb on - strand, within IAI46_04765at 1023.321 kb on - strand, within IAI46_04765at 1023.321 kb on - strand, within IAI46_04765at 1023.382 kb on + strand, within IAI46_04765at 1023.553 kb on + strand, within IAI46_04765at 1023.553 kb on + strand, within IAI46_04765at 1023.553 kb on + strand, within IAI46_04765at 1023.673 kb on + strand, within IAI46_04765at 1023.673 kb on + strand, within IAI46_04765at 1023.674 kb on - strand, within IAI46_04765at 1023.674 kb on - strand, within IAI46_04765at 1023.674 kb on - strand, within IAI46_04765at 1023.674 kb on - strand, within IAI46_04765at 1023.935 kb on + strand, within IAI46_04765at 1024.039 kb on - strand, within IAI46_04765at 1024.313 kb on + strandat 1024.417 kb on + strandat 1024.482 kb on + strandat 1024.482 kb on + strandat 1024.483 kb on - strandat 1024.483 kb on - strandat 1024.483 kb on - strandat 1024.483 kb on - strandat 1024.737 kb on - strand, within IAI46_04770at 1024.741 kb on + strand, within IAI46_04770at 1024.742 kb on - strand, within IAI46_04770at 1024.841 kb on + strand, within IAI46_04770at 1024.919 kb on + strand, within IAI46_04770at 1024.964 kb on + strand, within IAI46_04770at 1024.986 kb on - strand, within IAI46_04770at 1025.021 kb on + strand, within IAI46_04770at 1025.021 kb on + strand, within IAI46_04770at 1025.022 kb on - strand, within IAI46_04770at 1025.038 kb on + strand, within IAI46_04770at 1025.087 kb on + strand, within IAI46_04770at 1025.088 kb on - strand, within IAI46_04770at 1025.088 kb on - strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.200 kb on + strand, within IAI46_04770at 1025.201 kb on - strand, within IAI46_04770at 1025.320 kb on - strand, within IAI46_04770at 1025.403 kb on - strand, within IAI46_04770at 1025.403 kb on - strand, within IAI46_04770at 1025.436 kb on + strand, within IAI46_04770

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,020,344 + IAI46_04760 0.19 +0.2
1,020,428 + IAI46_04760 0.29 +1.6
1,020,428 + IAI46_04760 0.29 +0.8
1,020,429 - IAI46_04760 0.29 -0.3
1,020,429 - IAI46_04760 0.29 +0.0
1,020,429 - IAI46_04760 0.29 +1.4
1,020,429 - IAI46_04760 0.29 -0.3
1,020,429 - IAI46_04760 0.29 -0.1
1,020,429 - IAI46_04760 0.29 +0.7
1,020,429 - IAI46_04760 0.29 -0.2
1,020,478 - IAI46_04760 0.35 -0.5
1,020,507 + IAI46_04760 0.38 -0.1
1,020,507 + IAI46_04760 0.38 +0.2
1,020,507 + IAI46_04760 0.38 -0.2
1,020,508 - IAI46_04760 0.38 -1.1
1,020,508 - IAI46_04760 0.38 -0.0
1,020,748 - IAI46_04760 0.67 +0.3
1,020,748 - IAI46_04760 0.67 +0.3
1,020,749 + IAI46_04760 0.67 -0.4
1,020,750 - IAI46_04760 0.67 -1.6
1,020,750 - IAI46_04760 0.67 -0.1
1,020,759 + IAI46_04760 0.68 -1.3
1,020,759 + IAI46_04760 0.68 -0.1
1,020,759 + IAI46_04760 0.68 +0.6
1,020,760 - IAI46_04760 0.68 +0.3
1,020,760 - IAI46_04760 0.68 -0.0
1,020,852 + IAI46_04760 0.79 -0.2
1,021,005 + -0.2
1,021,008 + -0.1
1,021,009 - -0.7
1,021,025 + -1.2
1,021,112 - -0.3
1,021,112 - -0.6
1,021,114 - +0.7
1,021,118 - +1.0
1,021,122 + -0.3
1,021,122 + +0.8
1,021,123 - +0.4
1,021,140 + +0.7
1,021,141 - -0.3
1,021,148 + +1.5
1,021,148 + +0.5
1,021,149 - -0.8
1,021,149 - -0.0
1,021,226 + +0.5
1,021,227 - +0.3
1,021,227 - +0.4
1,021,227 - -0.2
1,021,287 + -0.1
1,021,287 + -0.5
1,021,411 - +1.0
1,021,537 + +0.8
1,021,646 + IAI46_04765 0.13 +0.1
1,021,646 + IAI46_04765 0.13 +0.2
1,021,683 + IAI46_04765 0.14 -0.3
1,021,692 + IAI46_04765 0.14 +0.4
1,021,727 + IAI46_04765 0.15 -0.7
1,021,743 - IAI46_04765 0.16 -0.0
1,022,172 + IAI46_04765 0.29 +1.3
1,022,236 + IAI46_04765 0.31 +1.1
1,022,236 + IAI46_04765 0.31 +0.5
1,022,236 + IAI46_04765 0.31 +0.1
1,022,236 + IAI46_04765 0.31 +0.4
1,022,236 + IAI46_04765 0.31 +1.1
1,022,236 + IAI46_04765 0.31 -0.0
1,022,237 - IAI46_04765 0.31 -0.2
1,022,237 - IAI46_04765 0.31 +0.5
1,022,238 + IAI46_04765 0.31 -0.7
1,022,238 + IAI46_04765 0.31 -0.2
1,022,239 - IAI46_04765 0.31 -0.2
1,022,325 + IAI46_04765 0.34 -0.3
1,022,325 + IAI46_04765 0.34 +0.1
1,022,325 + IAI46_04765 0.34 -0.2
1,022,507 - IAI46_04765 0.39 +0.1
1,022,507 - IAI46_04765 0.39 +0.3
1,022,821 + IAI46_04765 0.49 -0.8
1,022,831 + IAI46_04765 0.49 +0.4
1,022,831 + IAI46_04765 0.49 +0.1
1,022,832 - IAI46_04765 0.49 -0.5
1,022,832 - IAI46_04765 0.49 -0.5
1,022,950 + IAI46_04765 0.53 -0.1
1,023,106 + IAI46_04765 0.58 -1.4
1,023,106 + IAI46_04765 0.58 +0.3
1,023,107 - IAI46_04765 0.58 +1.0
1,023,107 - IAI46_04765 0.58 +1.1
1,023,320 + IAI46_04765 0.64 -0.5
1,023,321 - IAI46_04765 0.64 -1.1
1,023,321 - IAI46_04765 0.64 +0.8
1,023,321 - IAI46_04765 0.64 -1.9
1,023,382 + IAI46_04765 0.66 -0.1
1,023,553 + IAI46_04765 0.72 +0.8
1,023,553 + IAI46_04765 0.72 +0.5
1,023,553 + IAI46_04765 0.72 +0.4
1,023,673 + IAI46_04765 0.75 +0.3
1,023,673 + IAI46_04765 0.75 +0.4
1,023,674 - IAI46_04765 0.75 -1.4
1,023,674 - IAI46_04765 0.75 -0.0
1,023,674 - IAI46_04765 0.75 +0.8
1,023,674 - IAI46_04765 0.75 -0.1
1,023,935 + IAI46_04765 0.83 -0.1
1,024,039 - IAI46_04765 0.87 -0.5
1,024,313 + +0.1
1,024,417 + -0.3
1,024,482 + +1.1
1,024,482 + -0.2
1,024,483 - -0.5
1,024,483 - -0.2
1,024,483 - -1.0
1,024,483 - -0.0
1,024,737 - IAI46_04770 0.21 -1.2
1,024,741 + IAI46_04770 0.22 -0.8
1,024,742 - IAI46_04770 0.22 +0.5
1,024,841 + IAI46_04770 0.30 -0.3
1,024,919 + IAI46_04770 0.36 -0.4
1,024,964 + IAI46_04770 0.40 -1.2
1,024,986 - IAI46_04770 0.42 -0.2
1,025,021 + IAI46_04770 0.44 +0.3
1,025,021 + IAI46_04770 0.44 -0.9
1,025,022 - IAI46_04770 0.45 -0.1
1,025,038 + IAI46_04770 0.46 +0.3
1,025,087 + IAI46_04770 0.50 -0.3
1,025,088 - IAI46_04770 0.50 -0.7
1,025,088 - IAI46_04770 0.50 +1.1
1,025,089 + IAI46_04770 0.50 -0.4
1,025,089 + IAI46_04770 0.50 -1.5
1,025,089 + IAI46_04770 0.50 +0.3
1,025,089 + IAI46_04770 0.50 -1.0
1,025,089 + IAI46_04770 0.50 -0.5
1,025,089 + IAI46_04770 0.50 +1.1
1,025,089 + IAI46_04770 0.50 +0.1
1,025,089 + IAI46_04770 0.50 -1.0
1,025,089 + IAI46_04770 0.50 -0.2
1,025,089 + IAI46_04770 0.50 -0.2
1,025,089 + IAI46_04770 0.50 +0.5
1,025,089 + IAI46_04770 0.50 -0.5
1,025,089 + IAI46_04770 0.50 +0.2
1,025,089 + IAI46_04770 0.50 +0.4
1,025,089 + IAI46_04770 0.50 +0.7
1,025,089 + IAI46_04770 0.50 -0.3
1,025,089 + IAI46_04770 0.50 -0.3
1,025,089 + IAI46_04770 0.50 -0.1
1,025,089 + IAI46_04770 0.50 -1.1
1,025,090 - IAI46_04770 0.50 +0.4
1,025,090 - IAI46_04770 0.50 -0.7
1,025,090 - IAI46_04770 0.50 +1.6
1,025,090 - IAI46_04770 0.50 -1.1
1,025,090 - IAI46_04770 0.50 +0.7
1,025,090 - IAI46_04770 0.50 -0.3
1,025,090 - IAI46_04770 0.50 +0.6
1,025,090 - IAI46_04770 0.50 -0.1
1,025,200 + IAI46_04770 0.59 -0.4
1,025,201 - IAI46_04770 0.59 +0.6
1,025,320 - IAI46_04770 0.69 +0.1
1,025,403 - IAI46_04770 0.75 -0.0
1,025,403 - IAI46_04770 0.75 -1.0
1,025,436 + IAI46_04770 0.78 -0.5

Or see this region's nucleotide sequence