Strain Fitness in Serratia liquefaciens MT49 around IAI46_04115

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04105 and IAI46_04110 are separated by 141 nucleotidesIAI46_04110 and IAI46_04115 are separated by 46 nucleotidesIAI46_04115 and IAI46_04120 are separated by 106 nucleotides IAI46_04105: IAI46_04105 - beta-ketoacyl-ACP synthase, at 884,518 to 885,747 _04105 IAI46_04110: IAI46_04110 - 2,5-didehydrogluconate reductase DkgB, at 885,889 to 886,692 _04110 IAI46_04115: IAI46_04115 - LysR family transcriptional regulator, at 886,739 to 887,626 _04115 IAI46_04120: IAI46_04120 - MFS transporter, at 887,733 to 888,908 _04120 Position (kb) 886 887 888Strain fitness (log2 ratio) -1 0 1 2at 885.745 kb on + strandat 885.791 kb on - strandat 885.844 kb on + strandat 885.871 kb on + strandat 885.888 kb on + strandat 885.889 kb on - strandat 885.911 kb on + strandat 885.957 kb on + strandat 885.958 kb on - strandat 886.069 kb on - strand, within IAI46_04110at 886.069 kb on - strand, within IAI46_04110at 886.157 kb on - strand, within IAI46_04110at 886.248 kb on - strand, within IAI46_04110at 886.361 kb on - strand, within IAI46_04110at 886.420 kb on + strand, within IAI46_04110at 886.421 kb on - strand, within IAI46_04110at 886.506 kb on + strand, within IAI46_04110at 886.810 kb on - strandat 886.812 kb on + strandat 886.900 kb on + strand, within IAI46_04115at 886.901 kb on - strand, within IAI46_04115at 887.047 kb on + strand, within IAI46_04115at 887.047 kb on + strand, within IAI46_04115at 887.100 kb on + strand, within IAI46_04115at 887.100 kb on + strand, within IAI46_04115at 887.100 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.113 kb on - strand, within IAI46_04115at 887.113 kb on - strand, within IAI46_04115at 887.113 kb on - strand, within IAI46_04115at 887.155 kb on + strand, within IAI46_04115at 887.155 kb on + strand, within IAI46_04115at 887.156 kb on - strand, within IAI46_04115at 887.156 kb on - strand, within IAI46_04115at 887.213 kb on - strand, within IAI46_04115at 887.230 kb on + strand, within IAI46_04115at 887.230 kb on + strand, within IAI46_04115at 887.231 kb on - strand, within IAI46_04115at 887.272 kb on - strand, within IAI46_04115at 887.306 kb on + strand, within IAI46_04115at 887.306 kb on + strand, within IAI46_04115at 887.307 kb on - strand, within IAI46_04115at 887.307 kb on - strand, within IAI46_04115at 887.409 kb on - strand, within IAI46_04115at 887.409 kb on - strand, within IAI46_04115at 887.599 kb on + strandat 887.677 kb on + strandat 887.678 kb on - strandat 887.694 kb on + strandat 887.746 kb on + strandat 887.746 kb on + strandat 887.747 kb on - strandat 887.747 kb on - strandat 887.798 kb on - strandat 887.800 kb on + strandat 887.800 kb on + strandat 887.801 kb on - strandat 887.801 kb on - strandat 887.806 kb on + strandat 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.872 kb on - strand, within IAI46_04120at 887.872 kb on - strand, within IAI46_04120at 887.872 kb on - strand, within IAI46_04120at 887.966 kb on + strand, within IAI46_04120at 887.967 kb on - strand, within IAI46_04120at 888.052 kb on + strand, within IAI46_04120at 888.052 kb on + strand, within IAI46_04120at 888.072 kb on - strand, within IAI46_04120at 888.074 kb on + strand, within IAI46_04120at 888.075 kb on - strand, within IAI46_04120at 888.080 kb on + strand, within IAI46_04120at 888.080 kb on + strand, within IAI46_04120at 888.125 kb on + strand, within IAI46_04120at 888.126 kb on - strand, within IAI46_04120at 888.126 kb on - strand, within IAI46_04120at 888.126 kb on - strand, within IAI46_04120at 888.163 kb on + strand, within IAI46_04120at 888.227 kb on + strand, within IAI46_04120at 888.227 kb on + strand, within IAI46_04120at 888.227 kb on + strand, within IAI46_04120at 888.278 kb on + strand, within IAI46_04120at 888.369 kb on + strand, within IAI46_04120at 888.379 kb on + strand, within IAI46_04120at 888.380 kb on - strand, within IAI46_04120at 888.545 kb on + strand, within IAI46_04120at 888.599 kb on + strand, within IAI46_04120at 888.600 kb on - strand, within IAI46_04120

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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885,745 + +0.3
885,791 - +1.2
885,844 + +0.2
885,871 + +0.9
885,888 + -1.5
885,889 - +0.6
885,911 + -0.0
885,957 + +1.0
885,958 - +0.9
886,069 - IAI46_04110 0.22 -0.6
886,069 - IAI46_04110 0.22 +0.3
886,157 - IAI46_04110 0.33 +0.8
886,248 - IAI46_04110 0.45 +0.2
886,361 - IAI46_04110 0.59 +2.5
886,420 + IAI46_04110 0.66 +0.1
886,421 - IAI46_04110 0.66 +0.1
886,506 + IAI46_04110 0.77 -0.4
886,810 - +0.2
886,812 + -0.6
886,900 + IAI46_04115 0.18 +0.8
886,901 - IAI46_04115 0.18 +0.7
887,047 + IAI46_04115 0.35 +0.3
887,047 + IAI46_04115 0.35 +0.6
887,100 + IAI46_04115 0.41 +0.3
887,100 + IAI46_04115 0.41 -0.4
887,100 + IAI46_04115 0.41 +0.2
887,112 + IAI46_04115 0.42 +0.5
887,112 + IAI46_04115 0.42 -0.0
887,112 + IAI46_04115 0.42 -0.0
887,112 + IAI46_04115 0.42 +0.5
887,113 - IAI46_04115 0.42 +0.3
887,113 - IAI46_04115 0.42 +0.5
887,113 - IAI46_04115 0.42 +0.5
887,155 + IAI46_04115 0.47 -0.7
887,155 + IAI46_04115 0.47 -0.0
887,156 - IAI46_04115 0.47 -0.9
887,156 - IAI46_04115 0.47 -1.3
887,213 - IAI46_04115 0.53 -0.4
887,230 + IAI46_04115 0.55 +0.3
887,230 + IAI46_04115 0.55 +0.5
887,231 - IAI46_04115 0.55 +0.1
887,272 - IAI46_04115 0.60 -0.5
887,306 + IAI46_04115 0.64 -0.0
887,306 + IAI46_04115 0.64 -0.9
887,307 - IAI46_04115 0.64 +0.4
887,307 - IAI46_04115 0.64 -0.0
887,409 - IAI46_04115 0.75 +0.2
887,409 - IAI46_04115 0.75 +1.4
887,599 + +0.2
887,677 + +0.8
887,678 - +0.8
887,694 + -0.1
887,746 + +0.2
887,746 + +0.9
887,747 - -0.0
887,747 - +1.4
887,798 - +0.1
887,800 + +1.3
887,800 + +0.4
887,801 - +0.3
887,801 - +1.0
887,806 + +0.1
887,871 + IAI46_04120 0.12 +0.8
887,871 + IAI46_04120 0.12 -0.3
887,871 + IAI46_04120 0.12 +0.0
887,871 + IAI46_04120 0.12 -0.3
887,871 + IAI46_04120 0.12 +0.0
887,871 + IAI46_04120 0.12 +0.8
887,871 + IAI46_04120 0.12 +0.7
887,872 - IAI46_04120 0.12 +0.5
887,872 - IAI46_04120 0.12 -0.3
887,872 - IAI46_04120 0.12 +0.7
887,966 + IAI46_04120 0.20 +0.4
887,967 - IAI46_04120 0.20 +0.3
888,052 + IAI46_04120 0.27 -0.3
888,052 + IAI46_04120 0.27 -0.1
888,072 - IAI46_04120 0.29 +0.1
888,074 + IAI46_04120 0.29 +0.5
888,075 - IAI46_04120 0.29 +0.6
888,080 + IAI46_04120 0.30 -0.1
888,080 + IAI46_04120 0.30 -0.4
888,125 + IAI46_04120 0.33 +1.1
888,126 - IAI46_04120 0.33 -0.6
888,126 - IAI46_04120 0.33 +0.1
888,126 - IAI46_04120 0.33 -0.3
888,163 + IAI46_04120 0.37 +0.3
888,227 + IAI46_04120 0.42 -0.0
888,227 + IAI46_04120 0.42 +0.7
888,227 + IAI46_04120 0.42 -0.8
888,278 + IAI46_04120 0.46 +0.4
888,369 + IAI46_04120 0.54 -0.8
888,379 + IAI46_04120 0.55 -0.4
888,380 - IAI46_04120 0.55 -0.3
888,545 + IAI46_04120 0.69 +0.1
888,599 + IAI46_04120 0.74 -0.6
888,600 - IAI46_04120 0.74 -0.6

Or see this region's nucleotide sequence