Strain Fitness in Serratia liquefaciens MT49 around IAI46_03950

Experiment: dichromate 20 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_03945 and IAI46_03950 are separated by 237 nucleotidesIAI46_03950 and IAI46_03955 are separated by 643 nucleotides IAI46_03945: IAI46_03945 - DUF481 domain-containing protein, at 852,862 to 853,626 _03945 IAI46_03950: IAI46_03950 - anaerobic C4-dicarboxylate transporter, at 853,864 to 855,210 _03950 IAI46_03955: IAI46_03955 - 3-deoxy-7-phosphoheptulonate synthase, at 855,854 to 856,927 _03955 Position (kb) 853 854 855 856Strain fitness (log2 ratio) -2 -1 0 1 2at 852.938 kb on + strandat 852.939 kb on - strand, within IAI46_03945at 852.951 kb on - strand, within IAI46_03945at 853.059 kb on + strand, within IAI46_03945at 853.082 kb on + strand, within IAI46_03945at 853.082 kb on + strand, within IAI46_03945at 853.083 kb on - strand, within IAI46_03945at 853.097 kb on + strand, within IAI46_03945at 853.097 kb on + strand, within IAI46_03945at 853.133 kb on + strand, within IAI46_03945at 853.134 kb on - strand, within IAI46_03945at 853.192 kb on - strand, within IAI46_03945at 853.238 kb on + strand, within IAI46_03945at 853.283 kb on + strand, within IAI46_03945at 853.284 kb on - strand, within IAI46_03945at 853.287 kb on + strand, within IAI46_03945at 853.287 kb on + strand, within IAI46_03945at 853.287 kb on + strand, within IAI46_03945at 853.287 kb on + strand, within IAI46_03945at 853.287 kb on + strand, within IAI46_03945at 853.302 kb on + strand, within IAI46_03945at 853.302 kb on + strand, within IAI46_03945at 853.302 kb on + strand, within IAI46_03945at 853.303 kb on - strand, within IAI46_03945at 853.303 kb on - strand, within IAI46_03945at 853.304 kb on + strand, within IAI46_03945at 853.305 kb on - strand, within IAI46_03945at 853.305 kb on - strand, within IAI46_03945at 853.469 kb on + strand, within IAI46_03945at 853.540 kb on - strand, within IAI46_03945at 853.585 kb on - strandat 853.643 kb on - strandat 853.674 kb on - strandat 853.707 kb on + strandat 853.708 kb on - strandat 853.710 kb on + strandat 853.710 kb on + strandat 853.741 kb on + strandat 853.804 kb on + strandat 853.932 kb on + strandat 853.936 kb on - strandat 854.015 kb on + strand, within IAI46_03950at 854.016 kb on - strand, within IAI46_03950at 854.033 kb on + strand, within IAI46_03950at 854.033 kb on + strand, within IAI46_03950at 854.034 kb on - strand, within IAI46_03950at 854.034 kb on - strand, within IAI46_03950at 854.168 kb on + strand, within IAI46_03950at 854.168 kb on + strand, within IAI46_03950at 854.168 kb on + strand, within IAI46_03950at 854.169 kb on - strand, within IAI46_03950at 854.189 kb on - strand, within IAI46_03950at 854.223 kb on + strand, within IAI46_03950at 854.223 kb on + strand, within IAI46_03950at 854.224 kb on - strand, within IAI46_03950at 854.224 kb on - strand, within IAI46_03950at 854.241 kb on + strand, within IAI46_03950at 854.241 kb on + strand, within IAI46_03950at 854.242 kb on - strand, within IAI46_03950at 854.242 kb on - strand, within IAI46_03950at 854.349 kb on + strand, within IAI46_03950at 854.410 kb on + strand, within IAI46_03950at 854.410 kb on + strand, within IAI46_03950at 854.441 kb on - strand, within IAI46_03950at 854.441 kb on - strand, within IAI46_03950at 854.507 kb on + strand, within IAI46_03950at 854.561 kb on + strand, within IAI46_03950at 854.653 kb on + strand, within IAI46_03950at 854.665 kb on + strand, within IAI46_03950at 854.665 kb on + strand, within IAI46_03950at 854.699 kb on - strand, within IAI46_03950at 854.715 kb on + strand, within IAI46_03950at 854.855 kb on - strand, within IAI46_03950at 854.882 kb on + strand, within IAI46_03950at 854.882 kb on + strand, within IAI46_03950at 854.883 kb on - strand, within IAI46_03950at 854.883 kb on - strand, within IAI46_03950at 854.883 kb on - strand, within IAI46_03950at 854.951 kb on + strand, within IAI46_03950at 854.951 kb on + strand, within IAI46_03950at 854.952 kb on - strand, within IAI46_03950at 854.952 kb on - strand, within IAI46_03950at 854.952 kb on - strand, within IAI46_03950at 854.952 kb on - strand, within IAI46_03950at 854.984 kb on + strand, within IAI46_03950at 854.984 kb on + strand, within IAI46_03950at 854.984 kb on + strand, within IAI46_03950at 854.984 kb on + strand, within IAI46_03950at 854.984 kb on + strand, within IAI46_03950at 854.984 kb on + strand, within IAI46_03950at 854.984 kb on + strand, within IAI46_03950at 854.985 kb on - strand, within IAI46_03950at 854.985 kb on - strand, within IAI46_03950at 855.051 kb on + strand, within IAI46_03950at 855.052 kb on - strand, within IAI46_03950at 855.060 kb on + strand, within IAI46_03950at 855.115 kb on + strandat 855.115 kb on + strandat 855.131 kb on - strandat 855.184 kb on - strandat 855.187 kb on - strandat 855.214 kb on - strandat 855.252 kb on - strandat 855.326 kb on - strandat 855.348 kb on - strandat 855.366 kb on + strandat 855.453 kb on + strandat 855.667 kb on + strandat 855.726 kb on + strandat 855.823 kb on - strandat 855.848 kb on - strandat 855.875 kb on - strandat 855.884 kb on - strandat 855.884 kb on - strandat 855.884 kb on - strandat 856.042 kb on + strand, within IAI46_03955at 856.043 kb on - strand, within IAI46_03955at 856.118 kb on + strand, within IAI46_03955at 856.119 kb on - strand, within IAI46_03955at 856.121 kb on - strand, within IAI46_03955at 856.121 kb on - strand, within IAI46_03955at 856.136 kb on + strand, within IAI46_03955at 856.136 kb on + strand, within IAI46_03955at 856.181 kb on - strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
remove
852,938 + +0.1
852,939 - IAI46_03945 0.10 +0.6
852,951 - IAI46_03945 0.12 +0.8
853,059 + IAI46_03945 0.26 +0.1
853,082 + IAI46_03945 0.29 +0.9
853,082 + IAI46_03945 0.29 +1.3
853,083 - IAI46_03945 0.29 +1.1
853,097 + IAI46_03945 0.31 -0.1
853,097 + IAI46_03945 0.31 +0.9
853,133 + IAI46_03945 0.35 -2.0
853,134 - IAI46_03945 0.36 -0.8
853,192 - IAI46_03945 0.43 -1.0
853,238 + IAI46_03945 0.49 -0.2
853,283 + IAI46_03945 0.55 +0.5
853,284 - IAI46_03945 0.55 -0.4
853,287 + IAI46_03945 0.56 -0.0
853,287 + IAI46_03945 0.56 +0.5
853,287 + IAI46_03945 0.56 +0.1
853,287 + IAI46_03945 0.56 +0.4
853,287 + IAI46_03945 0.56 -1.0
853,302 + IAI46_03945 0.58 +0.5
853,302 + IAI46_03945 0.58 +0.1
853,302 + IAI46_03945 0.58 +0.5
853,303 - IAI46_03945 0.58 +1.0
853,303 - IAI46_03945 0.58 +0.1
853,304 + IAI46_03945 0.58 +0.1
853,305 - IAI46_03945 0.58 +0.2
853,305 - IAI46_03945 0.58 -0.3
853,469 + IAI46_03945 0.79 +0.1
853,540 - IAI46_03945 0.89 +0.0
853,585 - +0.5
853,643 - -0.1
853,674 - -0.5
853,707 + +0.6
853,708 - -0.6
853,710 + +1.0
853,710 + -0.4
853,741 + +1.7
853,804 + +0.2
853,932 + -0.1
853,936 - -1.5
854,015 + IAI46_03950 0.11 +1.7
854,016 - IAI46_03950 0.11 +0.7
854,033 + IAI46_03950 0.13 -0.2
854,033 + IAI46_03950 0.13 +0.2
854,034 - IAI46_03950 0.13 +0.3
854,034 - IAI46_03950 0.13 -0.2
854,168 + IAI46_03950 0.23 +0.6
854,168 + IAI46_03950 0.23 +1.3
854,168 + IAI46_03950 0.23 +0.8
854,169 - IAI46_03950 0.23 +0.0
854,189 - IAI46_03950 0.24 +0.9
854,223 + IAI46_03950 0.27 +0.5
854,223 + IAI46_03950 0.27 -0.4
854,224 - IAI46_03950 0.27 +0.6
854,224 - IAI46_03950 0.27 -0.1
854,241 + IAI46_03950 0.28 -0.5
854,241 + IAI46_03950 0.28 +0.7
854,242 - IAI46_03950 0.28 +1.1
854,242 - IAI46_03950 0.28 -0.3
854,349 + IAI46_03950 0.36 +1.0
854,410 + IAI46_03950 0.41 +0.2
854,410 + IAI46_03950 0.41 +0.6
854,441 - IAI46_03950 0.43 -0.4
854,441 - IAI46_03950 0.43 -0.6
854,507 + IAI46_03950 0.48 -1.2
854,561 + IAI46_03950 0.52 +2.2
854,653 + IAI46_03950 0.59 +1.0
854,665 + IAI46_03950 0.59 -0.7
854,665 + IAI46_03950 0.59 +0.1
854,699 - IAI46_03950 0.62 -0.2
854,715 + IAI46_03950 0.63 +0.0
854,855 - IAI46_03950 0.74 +0.4
854,882 + IAI46_03950 0.76 -0.3
854,882 + IAI46_03950 0.76 -0.3
854,883 - IAI46_03950 0.76 -0.3
854,883 - IAI46_03950 0.76 +0.3
854,883 - IAI46_03950 0.76 -0.5
854,951 + IAI46_03950 0.81 +0.6
854,951 + IAI46_03950 0.81 -1.1
854,952 - IAI46_03950 0.81 +0.9
854,952 - IAI46_03950 0.81 -1.1
854,952 - IAI46_03950 0.81 -0.6
854,952 - IAI46_03950 0.81 -0.1
854,984 + IAI46_03950 0.83 +1.1
854,984 + IAI46_03950 0.83 +0.2
854,984 + IAI46_03950 0.83 +0.1
854,984 + IAI46_03950 0.83 +0.3
854,984 + IAI46_03950 0.83 -0.5
854,984 + IAI46_03950 0.83 +0.2
854,984 + IAI46_03950 0.83 +0.8
854,985 - IAI46_03950 0.83 +0.1
854,985 - IAI46_03950 0.83 -1.0
855,051 + IAI46_03950 0.88 -0.7
855,052 - IAI46_03950 0.88 -0.1
855,060 + IAI46_03950 0.89 +0.4
855,115 + +0.7
855,115 + -0.5
855,131 - +0.1
855,184 - -0.2
855,187 - +0.0
855,214 - +0.0
855,252 - -0.3
855,326 - -0.1
855,348 - -0.3
855,366 + -0.5
855,453 + -0.2
855,667 + -0.9
855,726 + -0.5
855,823 - -0.2
855,848 - +0.5
855,875 - -0.4
855,884 - -1.0
855,884 - -0.2
855,884 - -0.8
856,042 + IAI46_03955 0.18 +1.0
856,043 - IAI46_03955 0.18 +0.7
856,118 + IAI46_03955 0.25 +0.0
856,119 - IAI46_03955 0.25 +0.9
856,121 - IAI46_03955 0.25 +1.0
856,121 - IAI46_03955 0.25 +0.2
856,136 + IAI46_03955 0.26 +1.4
856,136 + IAI46_03955 0.26 -1.0
856,181 - IAI46_03955 0.30 +0.2
856,190 + IAI46_03955 0.31 -0.2
856,190 + IAI46_03955 0.31 +0.0
856,190 + IAI46_03955 0.31 -0.7
856,190 + IAI46_03955 0.31 +0.9
856,190 + IAI46_03955 0.31 +1.6
856,190 + IAI46_03955 0.31 -0.1
856,190 + IAI46_03955 0.31 -0.5

Or see this region's nucleotide sequence