Strain Fitness in Serratia liquefaciens MT49 around IAI46_03490

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03485 and IAI46_03490 are separated by 101 nucleotidesIAI46_03490 and IAI46_03495 are separated by 41 nucleotidesIAI46_03495 and IAI46_03500 are separated by 50 nucleotides IAI46_03485: IAI46_03485 - preprotein translocase subunit SecA, at 754,846 to 757,557 _03485 IAI46_03490: IAI46_03490 - 8-oxo-dGTP diphosphatase MutT, at 757,659 to 758,063 _03490 IAI46_03495: IAI46_03495 - DNA gyrase inhibitor YacG, at 758,105 to 758,296 _03495 IAI46_03500: IAI46_03500 - cell division protein ZapD, at 758,347 to 759,099 _03500 Position (kb) 757 758 759Strain fitness (log2 ratio) -2 -1 0 1at 757.423 kb on + strandat 757.423 kb on + strandat 757.639 kb on - strandat 757.647 kb on - strandat 757.742 kb on + strand, within IAI46_03490at 757.743 kb on - strand, within IAI46_03490at 757.883 kb on + strand, within IAI46_03490at 757.910 kb on - strand, within IAI46_03490at 757.912 kb on - strand, within IAI46_03490at 757.961 kb on + strand, within IAI46_03490at 757.961 kb on + strand, within IAI46_03490at 757.962 kb on - strand, within IAI46_03490at 757.973 kb on - strand, within IAI46_03490at 758.015 kb on + strand, within IAI46_03490at 758.016 kb on - strand, within IAI46_03490at 758.016 kb on - strand, within IAI46_03490at 758.025 kb on - strandat 758.061 kb on + strandat 758.062 kb on - strandat 758.062 kb on - strandat 758.064 kb on + strandat 758.065 kb on - strandat 758.065 kb on - strandat 758.296 kb on + strandat 758.296 kb on + strandat 758.296 kb on + strandat 758.296 kb on + strandat 758.296 kb on + strandat 758.296 kb on + strandat 758.297 kb on - strandat 758.297 kb on - strandat 758.300 kb on + strandat 758.300 kb on + strandat 758.300 kb on + strandat 758.300 kb on + strandat 758.301 kb on - strandat 758.308 kb on - strandat 758.372 kb on - strandat 758.372 kb on - strandat 758.372 kb on - strandat 758.427 kb on - strand, within IAI46_03500at 758.436 kb on + strand, within IAI46_03500at 758.437 kb on - strand, within IAI46_03500at 758.446 kb on + strand, within IAI46_03500at 758.447 kb on - strand, within IAI46_03500at 758.456 kb on + strand, within IAI46_03500at 758.457 kb on - strand, within IAI46_03500at 758.482 kb on + strand, within IAI46_03500at 758.483 kb on - strand, within IAI46_03500at 758.483 kb on - strand, within IAI46_03500at 758.583 kb on + strand, within IAI46_03500at 758.583 kb on + strand, within IAI46_03500at 758.584 kb on - strand, within IAI46_03500at 758.584 kb on - strand, within IAI46_03500at 758.584 kb on - strand, within IAI46_03500at 758.629 kb on + strand, within IAI46_03500at 758.637 kb on + strand, within IAI46_03500at 758.637 kb on + strand, within IAI46_03500at 758.638 kb on - strand, within IAI46_03500at 758.737 kb on - strand, within IAI46_03500at 758.737 kb on - strand, within IAI46_03500at 758.838 kb on + strand, within IAI46_03500at 758.839 kb on - strand, within IAI46_03500at 758.839 kb on - strand, within IAI46_03500at 758.839 kb on - strand, within IAI46_03500at 758.903 kb on - strand, within IAI46_03500at 758.914 kb on + strand, within IAI46_03500at 758.914 kb on + strand, within IAI46_03500at 758.915 kb on - strand, within IAI46_03500at 758.915 kb on - strand, within IAI46_03500at 758.915 kb on - strand, within IAI46_03500at 758.990 kb on - strand, within IAI46_03500

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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757,423 + +0.1
757,423 + -0.2
757,639 - +0.2
757,647 - -1.0
757,742 + IAI46_03490 0.20 +0.2
757,743 - IAI46_03490 0.21 +0.8
757,883 + IAI46_03490 0.55 +0.2
757,910 - IAI46_03490 0.62 -1.4
757,912 - IAI46_03490 0.62 +0.7
757,961 + IAI46_03490 0.75 +0.6
757,961 + IAI46_03490 0.75 +1.0
757,962 - IAI46_03490 0.75 -0.6
757,973 - IAI46_03490 0.78 -0.5
758,015 + IAI46_03490 0.88 -0.3
758,016 - IAI46_03490 0.88 -0.7
758,016 - IAI46_03490 0.88 -0.1
758,025 - -0.2
758,061 + +0.7
758,062 - +0.7
758,062 - -0.1
758,064 + +0.2
758,065 - -0.4
758,065 - -0.2
758,296 + +0.1
758,296 + -0.3
758,296 + +0.2
758,296 + +0.1
758,296 + -0.1
758,296 + +0.3
758,297 - +0.1
758,297 - +1.0
758,300 + +0.8
758,300 + +0.2
758,300 + +0.3
758,300 + +0.8
758,301 - +0.2
758,308 - +0.8
758,372 - +1.1
758,372 - -0.0
758,372 - +0.8
758,427 - IAI46_03500 0.11 -2.0
758,436 + IAI46_03500 0.12 +0.7
758,437 - IAI46_03500 0.12 -1.3
758,446 + IAI46_03500 0.13 +0.3
758,447 - IAI46_03500 0.13 -0.2
758,456 + IAI46_03500 0.14 +0.7
758,457 - IAI46_03500 0.15 +0.7
758,482 + IAI46_03500 0.18 -1.1
758,483 - IAI46_03500 0.18 -0.1
758,483 - IAI46_03500 0.18 +0.6
758,583 + IAI46_03500 0.31 +0.3
758,583 + IAI46_03500 0.31 -0.3
758,584 - IAI46_03500 0.31 -0.9
758,584 - IAI46_03500 0.31 -0.3
758,584 - IAI46_03500 0.31 +0.4
758,629 + IAI46_03500 0.37 -1.1
758,637 + IAI46_03500 0.39 +0.7
758,637 + IAI46_03500 0.39 +0.6
758,638 - IAI46_03500 0.39 +0.9
758,737 - IAI46_03500 0.52 +0.2
758,737 - IAI46_03500 0.52 +1.4
758,838 + IAI46_03500 0.65 -1.2
758,839 - IAI46_03500 0.65 +1.1
758,839 - IAI46_03500 0.65 -1.4
758,839 - IAI46_03500 0.65 -0.3
758,903 - IAI46_03500 0.74 -0.4
758,914 + IAI46_03500 0.75 +0.2
758,914 + IAI46_03500 0.75 +0.3
758,915 - IAI46_03500 0.75 -0.4
758,915 - IAI46_03500 0.75 +0.0
758,915 - IAI46_03500 0.75 +0.1
758,990 - IAI46_03500 0.85 +1.1

Or see this region's nucleotide sequence