Strain Fitness in Serratia liquefaciens MT49 around IAI46_03015

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03005 and IAI46_03010 are separated by 342 nucleotidesIAI46_03010 and IAI46_03015 are separated by 44 nucleotidesIAI46_03015 and IAI46_03020 are separated by 633 nucleotides IAI46_03005: IAI46_03005 - MDR efflux pump AcrAB transcriptional activator RobA, at 640,857 to 641,726 _03005 IAI46_03010: IAI46_03010 - protein CreA, at 642,069 to 642,548 _03010 IAI46_03015: IAI46_03015 - two-component system response regulator ArcA, at 642,593 to 643,309 _03015 IAI46_03020: IAI46_03020 - tRNA/rRNA methyltransferase, at 643,943 to 644,629 _03020 Position (kb) 642 643 644Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 641.594 kb on + strand, within IAI46_03005at 641.595 kb on - strand, within IAI46_03005at 641.613 kb on + strand, within IAI46_03005at 641.614 kb on - strand, within IAI46_03005at 641.614 kb on - strand, within IAI46_03005at 641.614 kb on - strand, within IAI46_03005at 641.693 kb on + strandat 641.694 kb on - strandat 641.726 kb on + strandat 641.727 kb on - strandat 641.740 kb on - strandat 641.740 kb on - strandat 641.740 kb on - strandat 641.740 kb on - strandat 641.878 kb on - strandat 641.878 kb on - strandat 641.895 kb on - strandat 641.895 kb on - strandat 641.908 kb on - strandat 641.908 kb on - strandat 641.911 kb on - strandat 642.021 kb on + strandat 642.021 kb on + strandat 642.021 kb on + strandat 642.021 kb on + strandat 642.021 kb on + strandat 642.063 kb on - strandat 642.115 kb on + strandat 642.157 kb on + strand, within IAI46_03010at 642.219 kb on - strand, within IAI46_03010at 642.219 kb on - strand, within IAI46_03010at 642.234 kb on + strand, within IAI46_03010at 642.235 kb on - strand, within IAI46_03010at 642.237 kb on - strand, within IAI46_03010at 642.263 kb on + strand, within IAI46_03010at 642.263 kb on + strand, within IAI46_03010at 642.344 kb on + strand, within IAI46_03010at 642.464 kb on + strand, within IAI46_03010at 642.547 kb on - strandat 642.578 kb on - strandat 642.578 kb on - strandat 642.594 kb on + strandat 642.595 kb on - strandat 642.898 kb on + strand, within IAI46_03015at 642.899 kb on - strand, within IAI46_03015at 642.899 kb on - strand, within IAI46_03015at 642.900 kb on + strand, within IAI46_03015at 642.900 kb on + strand, within IAI46_03015at 642.901 kb on - strand, within IAI46_03015at 642.995 kb on - strand, within IAI46_03015at 643.009 kb on + strand, within IAI46_03015at 643.009 kb on + strand, within IAI46_03015at 643.010 kb on - strand, within IAI46_03015at 643.011 kb on + strand, within IAI46_03015at 643.011 kb on + strand, within IAI46_03015at 643.011 kb on + strand, within IAI46_03015at 643.012 kb on - strand, within IAI46_03015at 643.012 kb on - strand, within IAI46_03015at 643.012 kb on - strand, within IAI46_03015at 643.012 kb on - strand, within IAI46_03015at 643.012 kb on - strand, within IAI46_03015at 643.045 kb on + strand, within IAI46_03015at 643.169 kb on - strand, within IAI46_03015at 643.227 kb on + strand, within IAI46_03015at 643.227 kb on + strand, within IAI46_03015at 643.261 kb on + strandat 643.320 kb on + strandat 643.320 kb on + strandat 643.321 kb on - strandat 643.345 kb on - strandat 643.352 kb on - strandat 643.388 kb on + strandat 643.418 kb on + strandat 643.418 kb on + strandat 643.418 kb on + strandat 643.419 kb on - strandat 643.419 kb on - strandat 643.419 kb on - strandat 643.428 kb on - strandat 643.428 kb on - strandat 643.474 kb on - strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.498 kb on - strandat 643.498 kb on - strandat 643.498 kb on - strandat 643.498 kb on - strandat 643.498 kb on - strandat 643.526 kb on + strandat 643.527 kb on - strandat 643.537 kb on + strandat 643.537 kb on + strandat 643.537 kb on + strandat 643.538 kb on - strandat 643.538 kb on - strandat 643.538 kb on - strandat 643.549 kb on + strandat 643.549 kb on + strandat 643.549 kb on + strandat 643.549 kb on + strandat 643.549 kb on + strandat 643.550 kb on - strandat 643.550 kb on - strandat 643.550 kb on - strandat 643.552 kb on - strandat 643.552 kb on - strandat 643.601 kb on + strandat 643.603 kb on + strandat 643.649 kb on - strandat 643.664 kb on + strandat 643.665 kb on - strandat 643.679 kb on + strandat 643.680 kb on - strandat 643.690 kb on + strandat 643.691 kb on - strandat 643.713 kb on - strandat 643.713 kb on - strandat 643.735 kb on - strandat 643.749 kb on + strandat 643.766 kb on + strandat 643.767 kb on - strandat 643.770 kb on - strandat 643.786 kb on - strandat 643.796 kb on - strandat 643.798 kb on + strandat 643.798 kb on + strandat 643.816 kb on + strandat 643.816 kb on + strandat 643.817 kb on - strandat 643.817 kb on - strandat 643.846 kb on + strandat 643.864 kb on + strandat 643.886 kb on + strandat 643.926 kb on + strandat 643.938 kb on + strandat 643.954 kb on + strandat 643.954 kb on + strandat 643.955 kb on - strandat 643.963 kb on - strandat 644.027 kb on - strand, within IAI46_03020at 644.102 kb on - strand, within IAI46_03020at 644.154 kb on + strand, within IAI46_03020at 644.201 kb on + strand, within IAI46_03020at 644.202 kb on - strand, within IAI46_03020at 644.204 kb on + strand, within IAI46_03020at 644.204 kb on + strand, within IAI46_03020at 644.204 kb on + strand, within IAI46_03020at 644.204 kb on + strand, within IAI46_03020at 644.205 kb on - strand, within IAI46_03020at 644.209 kb on + strand, within IAI46_03020

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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641,594 + IAI46_03005 0.85 -0.1
641,595 - IAI46_03005 0.85 +0.1
641,613 + IAI46_03005 0.87 -0.0
641,614 - IAI46_03005 0.87 -0.2
641,614 - IAI46_03005 0.87 +1.2
641,614 - IAI46_03005 0.87 -0.7
641,693 + +0.1
641,694 - -0.6
641,726 + -0.3
641,727 - +0.5
641,740 - +1.5
641,740 - +0.6
641,740 - +0.1
641,740 - -0.0
641,878 - +0.1
641,878 - +0.8
641,895 - +0.4
641,895 - -0.4
641,908 - +0.1
641,908 - +0.5
641,911 - +1.1
642,021 + -0.7
642,021 + -0.1
642,021 + -0.5
642,021 + +0.5
642,021 + +0.6
642,063 - +0.5
642,115 + -0.1
642,157 + IAI46_03010 0.18 +0.7
642,219 - IAI46_03010 0.31 -1.5
642,219 - IAI46_03010 0.31 +1.1
642,234 + IAI46_03010 0.34 +0.3
642,235 - IAI46_03010 0.35 +0.0
642,237 - IAI46_03010 0.35 +0.6
642,263 + IAI46_03010 0.40 -0.2
642,263 + IAI46_03010 0.40 -0.4
642,344 + IAI46_03010 0.57 +0.4
642,464 + IAI46_03010 0.82 -0.4
642,547 - -0.2
642,578 - +0.3
642,578 - +0.1
642,594 + +0.5
642,595 - -0.2
642,898 + IAI46_03015 0.43 +1.6
642,899 - IAI46_03015 0.43 -0.5
642,899 - IAI46_03015 0.43 -0.5
642,900 + IAI46_03015 0.43 -1.2
642,900 + IAI46_03015 0.43 -0.4
642,901 - IAI46_03015 0.43 -2.2
642,995 - IAI46_03015 0.56 -0.6
643,009 + IAI46_03015 0.58 +0.4
643,009 + IAI46_03015 0.58 -1.1
643,010 - IAI46_03015 0.58 -1.1
643,011 + IAI46_03015 0.58 -0.2
643,011 + IAI46_03015 0.58 -1.5
643,011 + IAI46_03015 0.58 -0.2
643,012 - IAI46_03015 0.58 -2.3
643,012 - IAI46_03015 0.58 -2.6
643,012 - IAI46_03015 0.58 -1.5
643,012 - IAI46_03015 0.58 -2.9
643,012 - IAI46_03015 0.58 -0.9
643,045 + IAI46_03015 0.63 -0.2
643,169 - IAI46_03015 0.80 -2.0
643,227 + IAI46_03015 0.88 -2.3
643,227 + IAI46_03015 0.88 +0.1
643,261 + -2.1
643,320 + -1.0
643,320 + -2.2
643,321 - -0.9
643,345 - -2.6
643,352 - -0.4
643,388 + -1.1
643,418 + -1.1
643,418 + +0.1
643,418 + -0.4
643,419 - -0.8
643,419 - -0.6
643,419 - -1.2
643,428 - +0.6
643,428 - -0.8
643,474 - +0.4
643,497 + -1.2
643,497 + -0.8
643,497 + -0.5
643,497 + -0.3
643,497 + -2.0
643,497 + -1.3
643,497 + -1.8
643,498 - -0.9
643,498 - -0.6
643,498 - -0.4
643,498 - -0.5
643,498 - -0.7
643,526 + +0.2
643,527 - -0.8
643,537 + -1.1
643,537 + -1.3
643,537 + -0.9
643,538 - +0.3
643,538 - -0.4
643,538 - +0.2
643,549 + -0.5
643,549 + -1.5
643,549 + -1.7
643,549 + -1.9
643,549 + -1.8
643,550 - +0.1
643,550 - +0.1
643,550 - -0.7
643,552 - -0.6
643,552 - +0.1
643,601 + -0.2
643,603 + -0.0
643,649 - -0.3
643,664 + -1.3
643,665 - -0.1
643,679 + -0.3
643,680 - -1.5
643,690 + -0.8
643,691 - -0.2
643,713 - -0.4
643,713 - -0.8
643,735 - +0.4
643,749 + +0.6
643,766 + +0.8
643,767 - +0.5
643,770 - -0.4
643,786 - +0.3
643,796 - -0.3
643,798 + -0.5
643,798 + -0.1
643,816 + +0.1
643,816 + -0.2
643,817 - -2.6
643,817 - -0.1
643,846 + +0.9
643,864 + +0.7
643,886 + +0.5
643,926 + +0.2
643,938 + +1.4
643,954 + +0.7
643,954 + +0.7
643,955 - +0.7
643,963 - +0.3
644,027 - IAI46_03020 0.12 +2.3
644,102 - IAI46_03020 0.23 +0.0
644,154 + IAI46_03020 0.31 +0.1
644,201 + IAI46_03020 0.38 +1.0
644,202 - IAI46_03020 0.38 -0.6
644,204 + IAI46_03020 0.38 -2.0
644,204 + IAI46_03020 0.38 -0.0
644,204 + IAI46_03020 0.38 +0.6
644,204 + IAI46_03020 0.38 +0.7
644,205 - IAI46_03020 0.38 +0.1
644,209 + IAI46_03020 0.39 +0.0

Or see this region's nucleotide sequence