Strain Fitness in Serratia liquefaciens MT49 around IAI46_02590

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02580 and IAI46_02585 are separated by 57 nucleotidesIAI46_02585 and IAI46_02590 are separated by 80 nucleotidesIAI46_02590 and IAI46_02595 are separated by 16 nucleotides IAI46_02580: IAI46_02580 - porin, at 556,254 to 557,390 _02580 IAI46_02585: IAI46_02585 - helix-turn-helix transcriptional regulator, at 557,448 to 558,302 _02585 IAI46_02590: IAI46_02590 - hypothetical protein, at 558,383 to 558,778 _02590 IAI46_02595: IAI46_02595 - helix-turn-helix domain-containing protein, at 558,795 to 559,673 _02595 Position (kb) 558 559Strain fitness (log2 ratio) -2 -1 0 1at 557.445 kb on - strandat 557.566 kb on + strand, within IAI46_02585at 557.567 kb on - strand, within IAI46_02585at 557.567 kb on - strand, within IAI46_02585at 557.592 kb on + strand, within IAI46_02585at 557.700 kb on - strand, within IAI46_02585at 557.893 kb on + strand, within IAI46_02585at 557.893 kb on + strand, within IAI46_02585at 557.893 kb on + strand, within IAI46_02585at 557.956 kb on + strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 558.010 kb on + strand, within IAI46_02585at 558.010 kb on + strand, within IAI46_02585at 558.134 kb on + strand, within IAI46_02585at 558.135 kb on - strand, within IAI46_02585at 558.135 kb on - strand, within IAI46_02585at 558.135 kb on - strand, within IAI46_02585at 558.136 kb on + strand, within IAI46_02585at 558.137 kb on - strand, within IAI46_02585at 558.349 kb on - strandat 558.390 kb on + strandat 558.390 kb on + strandat 558.391 kb on - strandat 558.451 kb on + strand, within IAI46_02590at 558.526 kb on + strand, within IAI46_02590at 558.527 kb on - strand, within IAI46_02590at 558.622 kb on + strand, within IAI46_02590at 558.622 kb on + strand, within IAI46_02590at 558.622 kb on + strand, within IAI46_02590at 558.622 kb on + strand, within IAI46_02590at 558.623 kb on - strand, within IAI46_02590at 558.623 kb on - strand, within IAI46_02590at 558.777 kb on - strandat 558.777 kb on - strandat 558.799 kb on - strandat 558.811 kb on + strandat 558.812 kb on - strandat 558.873 kb on - strandat 558.892 kb on - strand, within IAI46_02595at 558.939 kb on - strand, within IAI46_02595at 558.939 kb on - strand, within IAI46_02595at 558.939 kb on - strand, within IAI46_02595at 558.951 kb on + strand, within IAI46_02595at 558.951 kb on + strand, within IAI46_02595at 558.951 kb on + strand, within IAI46_02595at 559.029 kb on - strand, within IAI46_02595at 559.033 kb on - strand, within IAI46_02595at 559.181 kb on + strand, within IAI46_02595at 559.181 kb on + strand, within IAI46_02595at 559.181 kb on + strand, within IAI46_02595at 559.182 kb on - strand, within IAI46_02595at 559.182 kb on - strand, within IAI46_02595at 559.182 kb on - strand, within IAI46_02595at 559.278 kb on + strand, within IAI46_02595at 559.329 kb on + strand, within IAI46_02595at 559.330 kb on - strand, within IAI46_02595at 559.388 kb on + strand, within IAI46_02595at 559.388 kb on + strand, within IAI46_02595at 559.388 kb on + strand, within IAI46_02595at 559.388 kb on + strand, within IAI46_02595at 559.389 kb on - strand, within IAI46_02595at 559.389 kb on - strand, within IAI46_02595at 559.389 kb on - strand, within IAI46_02595at 559.389 kb on - strand, within IAI46_02595at 559.389 kb on - strand, within IAI46_02595at 559.389 kb on - strand, within IAI46_02595at 559.450 kb on - strand, within IAI46_02595at 559.450 kb on - strand, within IAI46_02595at 559.460 kb on + strand, within IAI46_02595at 559.460 kb on + strand, within IAI46_02595at 559.461 kb on - strand, within IAI46_02595at 559.461 kb on - strand, within IAI46_02595at 559.461 kb on - strand, within IAI46_02595at 559.461 kb on - strand, within IAI46_02595at 559.461 kb on - strand, within IAI46_02595at 559.461 kb on - strand, within IAI46_02595at 559.461 kb on - strand, within IAI46_02595at 559.465 kb on - strand, within IAI46_02595at 559.465 kb on - strand, within IAI46_02595at 559.573 kb on - strand, within IAI46_02595at 559.595 kb on + strandat 559.595 kb on + strandat 559.626 kb on + strandat 559.626 kb on + strandat 559.671 kb on + strandat 559.672 kb on - strandat 559.755 kb on + strandat 559.771 kb on + strandat 559.771 kb on + strandat 559.771 kb on + strandat 559.771 kb on + strandat 559.771 kb on + strandat 559.771 kb on + strandat 559.771 kb on + strandat 559.771 kb on + strandat 559.772 kb on - strandat 559.772 kb on - strandat 559.772 kb on - strandat 559.773 kb on + strandat 559.773 kb on + strandat 559.774 kb on - strandat 559.774 kb on - strandat 559.774 kb on - strandat 559.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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557,445 - -0.6
557,566 + IAI46_02585 0.14 -0.2
557,567 - IAI46_02585 0.14 -0.0
557,567 - IAI46_02585 0.14 -1.4
557,592 + IAI46_02585 0.17 -0.2
557,700 - IAI46_02585 0.29 +0.3
557,893 + IAI46_02585 0.52 -1.0
557,893 + IAI46_02585 0.52 -0.4
557,893 + IAI46_02585 0.52 +0.1
557,956 + IAI46_02585 0.59 -0.3
557,958 - IAI46_02585 0.60 +0.1
557,958 - IAI46_02585 0.60 -0.6
557,958 - IAI46_02585 0.60 +0.0
557,958 - IAI46_02585 0.60 +0.5
558,010 + IAI46_02585 0.66 -0.4
558,010 + IAI46_02585 0.66 -0.3
558,134 + IAI46_02585 0.80 -0.3
558,135 - IAI46_02585 0.80 -0.7
558,135 - IAI46_02585 0.80 +1.0
558,135 - IAI46_02585 0.80 +0.2
558,136 + IAI46_02585 0.80 +0.2
558,137 - IAI46_02585 0.81 +0.4
558,349 - +0.3
558,390 + -0.6
558,390 + +0.5
558,391 - -0.7
558,451 + IAI46_02590 0.17 +0.4
558,526 + IAI46_02590 0.36 +0.5
558,527 - IAI46_02590 0.36 +1.1
558,622 + IAI46_02590 0.60 +0.7
558,622 + IAI46_02590 0.60 +1.2
558,622 + IAI46_02590 0.60 +0.4
558,622 + IAI46_02590 0.60 +0.7
558,623 - IAI46_02590 0.61 +0.3
558,623 - IAI46_02590 0.61 +0.3
558,777 - -0.0
558,777 - -0.1
558,799 - -1.3
558,811 + +0.1
558,812 - +0.2
558,873 - -0.7
558,892 - IAI46_02595 0.11 +0.2
558,939 - IAI46_02595 0.16 -0.6
558,939 - IAI46_02595 0.16 +1.2
558,939 - IAI46_02595 0.16 +0.0
558,951 + IAI46_02595 0.18 -0.1
558,951 + IAI46_02595 0.18 +0.5
558,951 + IAI46_02595 0.18 +0.4
559,029 - IAI46_02595 0.27 -0.2
559,033 - IAI46_02595 0.27 +1.1
559,181 + IAI46_02595 0.44 +0.3
559,181 + IAI46_02595 0.44 +0.3
559,181 + IAI46_02595 0.44 +0.5
559,182 - IAI46_02595 0.44 +0.4
559,182 - IAI46_02595 0.44 -0.5
559,182 - IAI46_02595 0.44 -0.6
559,278 + IAI46_02595 0.55 +0.1
559,329 + IAI46_02595 0.61 -0.4
559,330 - IAI46_02595 0.61 +0.4
559,388 + IAI46_02595 0.67 -0.2
559,388 + IAI46_02595 0.67 -0.4
559,388 + IAI46_02595 0.67 -1.2
559,388 + IAI46_02595 0.67 +0.1
559,389 - IAI46_02595 0.68 -0.5
559,389 - IAI46_02595 0.68 +0.4
559,389 - IAI46_02595 0.68 +1.2
559,389 - IAI46_02595 0.68 +0.2
559,389 - IAI46_02595 0.68 -0.1
559,389 - IAI46_02595 0.68 +0.0
559,450 - IAI46_02595 0.75 +0.9
559,450 - IAI46_02595 0.75 -0.2
559,460 + IAI46_02595 0.76 -0.4
559,460 + IAI46_02595 0.76 +0.7
559,461 - IAI46_02595 0.76 -0.1
559,461 - IAI46_02595 0.76 +0.6
559,461 - IAI46_02595 0.76 -0.4
559,461 - IAI46_02595 0.76 +0.0
559,461 - IAI46_02595 0.76 +1.4
559,461 - IAI46_02595 0.76 +0.3
559,461 - IAI46_02595 0.76 -2.1
559,465 - IAI46_02595 0.76 -1.8
559,465 - IAI46_02595 0.76 -2.4
559,573 - IAI46_02595 0.89 -0.1
559,595 + +0.3
559,595 + +0.1
559,626 + +0.4
559,626 + -0.0
559,671 + +1.7
559,672 - -0.2
559,755 + -0.3
559,771 + +0.7
559,771 + +0.3
559,771 + -0.9
559,771 + -0.1
559,771 + +0.7
559,771 + +1.5
559,771 + +0.8
559,771 + -0.4
559,772 - +0.3
559,772 - -0.2
559,772 - +0.1
559,773 + +0.2
559,773 + +0.9
559,774 - -0.4
559,774 - -0.8
559,774 - -0.0
559,774 - +0.5

Or see this region's nucleotide sequence