Strain Fitness in Serratia liquefaciens MT49 around IAI46_02385

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02380 and IAI46_02385 are separated by 82 nucleotidesIAI46_02385 and IAI46_02390 overlap by 1 nucleotides IAI46_02380: IAI46_02380 - integrase arm-type DNA-binding domain-containing protein, at 504,867 to 506,129 _02380 IAI46_02385: IAI46_02385 - hypothetical protein, at 506,212 to 507,111 _02385 IAI46_02390: IAI46_02390 - AAA family ATPase, at 507,111 to 508,901 _02390 Position (kb) 506 507 508Strain fitness (log2 ratio) -1 0 1 2at 505.232 kb on + strand, within IAI46_02380at 505.233 kb on - strand, within IAI46_02380at 505.307 kb on + strand, within IAI46_02380at 505.361 kb on - strand, within IAI46_02380at 505.408 kb on + strand, within IAI46_02380at 505.416 kb on + strand, within IAI46_02380at 505.417 kb on - strand, within IAI46_02380at 505.417 kb on - strand, within IAI46_02380at 505.447 kb on + strand, within IAI46_02380at 505.447 kb on + strand, within IAI46_02380at 505.447 kb on + strand, within IAI46_02380at 505.447 kb on + strand, within IAI46_02380at 505.448 kb on - strand, within IAI46_02380at 505.448 kb on - strand, within IAI46_02380at 505.451 kb on + strand, within IAI46_02380at 505.451 kb on + strand, within IAI46_02380at 505.452 kb on - strand, within IAI46_02380at 505.481 kb on - strand, within IAI46_02380at 505.487 kb on + strand, within IAI46_02380at 505.487 kb on + strand, within IAI46_02380at 505.487 kb on + strand, within IAI46_02380at 505.488 kb on - strand, within IAI46_02380at 505.504 kb on + strand, within IAI46_02380at 505.504 kb on + strand, within IAI46_02380at 505.504 kb on + strand, within IAI46_02380at 505.505 kb on - strand, within IAI46_02380at 505.505 kb on - strand, within IAI46_02380at 505.524 kb on + strand, within IAI46_02380at 505.524 kb on + strand, within IAI46_02380at 505.524 kb on + strand, within IAI46_02380at 505.525 kb on - strand, within IAI46_02380at 505.525 kb on - strand, within IAI46_02380at 505.525 kb on - strand, within IAI46_02380at 505.525 kb on - strand, within IAI46_02380at 505.525 kb on - strand, within IAI46_02380at 505.525 kb on - strand, within IAI46_02380at 505.526 kb on + strand, within IAI46_02380at 505.526 kb on + strand, within IAI46_02380at 505.526 kb on + strand, within IAI46_02380at 505.526 kb on + strand, within IAI46_02380at 505.527 kb on - strand, within IAI46_02380at 505.527 kb on - strand, within IAI46_02380at 505.540 kb on + strand, within IAI46_02380at 505.541 kb on - strand, within IAI46_02380at 505.549 kb on + strand, within IAI46_02380at 505.550 kb on - strand, within IAI46_02380at 505.635 kb on - strand, within IAI46_02380at 505.635 kb on - strand, within IAI46_02380at 505.635 kb on - strand, within IAI46_02380at 505.864 kb on - strand, within IAI46_02380at 505.864 kb on - strand, within IAI46_02380at 505.904 kb on + strand, within IAI46_02380at 505.905 kb on - strand, within IAI46_02380at 505.905 kb on - strand, within IAI46_02380at 505.905 kb on - strand, within IAI46_02380at 505.913 kb on + strand, within IAI46_02380at 505.913 kb on + strand, within IAI46_02380at 505.913 kb on + strand, within IAI46_02380at 505.914 kb on - strand, within IAI46_02380at 505.914 kb on - strand, within IAI46_02380at 505.914 kb on - strand, within IAI46_02380at 505.921 kb on + strand, within IAI46_02380at 505.921 kb on + strand, within IAI46_02380at 505.954 kb on + strand, within IAI46_02380at 505.982 kb on + strand, within IAI46_02380at 505.982 kb on + strand, within IAI46_02380at 505.983 kb on - strand, within IAI46_02380at 505.983 kb on - strand, within IAI46_02380at 505.983 kb on - strand, within IAI46_02380at 506.001 kb on + strand, within IAI46_02380at 506.002 kb on - strand, within IAI46_02380at 506.002 kb on - strand, within IAI46_02380at 506.009 kb on + strandat 506.009 kb on + strandat 506.033 kb on + strandat 506.033 kb on + strandat 506.033 kb on + strandat 506.033 kb on + strandat 506.034 kb on - strandat 506.091 kb on - strandat 506.109 kb on - strandat 506.217 kb on - strandat 506.308 kb on + strand, within IAI46_02385at 506.309 kb on - strand, within IAI46_02385at 506.310 kb on + strand, within IAI46_02385at 506.385 kb on + strand, within IAI46_02385at 506.610 kb on + strand, within IAI46_02385at 507.024 kb on + strandat 507.106 kb on + strandat 507.106 kb on + strandat 507.118 kb on - strandat 507.362 kb on - strand, within IAI46_02390at 507.462 kb on + strand, within IAI46_02390at 507.534 kb on - strand, within IAI46_02390at 507.777 kb on + strand, within IAI46_02390at 507.820 kb on + strand, within IAI46_02390

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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505,232 + IAI46_02380 0.29 -0.1
505,233 - IAI46_02380 0.29 -0.1
505,307 + IAI46_02380 0.35 -0.1
505,361 - IAI46_02380 0.39 +0.3
505,408 + IAI46_02380 0.43 -1.1
505,416 + IAI46_02380 0.43 +0.8
505,417 - IAI46_02380 0.44 +0.6
505,417 - IAI46_02380 0.44 -0.0
505,447 + IAI46_02380 0.46 +0.5
505,447 + IAI46_02380 0.46 -0.8
505,447 + IAI46_02380 0.46 +0.7
505,447 + IAI46_02380 0.46 +0.6
505,448 - IAI46_02380 0.46 +1.2
505,448 - IAI46_02380 0.46 +0.9
505,451 + IAI46_02380 0.46 -1.2
505,451 + IAI46_02380 0.46 +1.2
505,452 - IAI46_02380 0.46 +0.7
505,481 - IAI46_02380 0.49 +0.6
505,487 + IAI46_02380 0.49 -0.3
505,487 + IAI46_02380 0.49 +0.4
505,487 + IAI46_02380 0.49 -0.2
505,488 - IAI46_02380 0.49 -0.6
505,504 + IAI46_02380 0.50 +0.2
505,504 + IAI46_02380 0.50 +0.6
505,504 + IAI46_02380 0.50 +0.6
505,505 - IAI46_02380 0.51 +0.1
505,505 - IAI46_02380 0.51 +0.1
505,524 + IAI46_02380 0.52 -0.2
505,524 + IAI46_02380 0.52 -0.8
505,524 + IAI46_02380 0.52 +0.7
505,525 - IAI46_02380 0.52 -0.7
505,525 - IAI46_02380 0.52 -1.2
505,525 - IAI46_02380 0.52 +1.6
505,525 - IAI46_02380 0.52 +0.4
505,525 - IAI46_02380 0.52 -0.8
505,525 - IAI46_02380 0.52 +0.4
505,526 + IAI46_02380 0.52 +0.4
505,526 + IAI46_02380 0.52 +0.4
505,526 + IAI46_02380 0.52 +0.5
505,526 + IAI46_02380 0.52 +1.4
505,527 - IAI46_02380 0.52 +0.2
505,527 - IAI46_02380 0.52 +0.7
505,540 + IAI46_02380 0.53 +0.8
505,541 - IAI46_02380 0.53 +0.5
505,549 + IAI46_02380 0.54 -0.1
505,550 - IAI46_02380 0.54 +0.3
505,635 - IAI46_02380 0.61 -0.7
505,635 - IAI46_02380 0.61 -1.1
505,635 - IAI46_02380 0.61 -0.3
505,864 - IAI46_02380 0.79 +0.4
505,864 - IAI46_02380 0.79 +0.2
505,904 + IAI46_02380 0.82 +0.2
505,905 - IAI46_02380 0.82 +1.1
505,905 - IAI46_02380 0.82 +0.5
505,905 - IAI46_02380 0.82 +0.1
505,913 + IAI46_02380 0.83 +1.9
505,913 + IAI46_02380 0.83 -0.6
505,913 + IAI46_02380 0.83 -0.4
505,914 - IAI46_02380 0.83 +0.7
505,914 - IAI46_02380 0.83 +1.4
505,914 - IAI46_02380 0.83 -0.3
505,921 + IAI46_02380 0.83 -0.1
505,921 + IAI46_02380 0.83 +0.2
505,954 + IAI46_02380 0.86 +0.9
505,982 + IAI46_02380 0.88 +0.1
505,982 + IAI46_02380 0.88 +0.6
505,983 - IAI46_02380 0.88 -0.8
505,983 - IAI46_02380 0.88 +0.1
505,983 - IAI46_02380 0.88 +0.8
506,001 + IAI46_02380 0.90 +1.0
506,002 - IAI46_02380 0.90 +1.2
506,002 - IAI46_02380 0.90 +0.8
506,009 + +0.1
506,009 + +0.0
506,033 + +0.7
506,033 + -0.4
506,033 + +0.2
506,033 + -1.2
506,034 - +0.4
506,091 - +0.1
506,109 - +0.3
506,217 - -0.2
506,308 + IAI46_02385 0.11 +2.6
506,309 - IAI46_02385 0.11 +0.3
506,310 + IAI46_02385 0.11 +0.4
506,385 + IAI46_02385 0.19 +0.3
506,610 + IAI46_02385 0.44 +0.5
507,024 + +0.6
507,106 + -0.2
507,106 + +1.8
507,118 - +0.3
507,362 - IAI46_02390 0.14 -0.6
507,462 + IAI46_02390 0.20 +0.3
507,534 - IAI46_02390 0.24 +0.6
507,777 + IAI46_02390 0.37 -0.0
507,820 + IAI46_02390 0.40 -0.8

Or see this region's nucleotide sequence