Strain Fitness in Serratia liquefaciens MT49 around IAI46_02100

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02095 and IAI46_02100 overlap by 1 nucleotidesIAI46_02100 and IAI46_02105 are separated by 2 nucleotidesIAI46_02105 and IAI46_02110 are separated by 0 nucleotides IAI46_02095: IAI46_02095 - carbon-phosphorus lyase complex subunit PhnI, at 445,767 to 446,852 _02095 IAI46_02100: IAI46_02100 - phosphonate C-P lyase system protein PhnH, at 446,852 to 447,433 _02100 IAI46_02105: IAI46_02105 - phosphonate C-P lyase system protein PhnG, at 447,436 to 447,879 _02105 IAI46_02110: IAI46_02110 - phosphonate metabolism transcriptional regulator PhnF, at 447,880 to 448,608 _02110 Position (kb) 446 447 448Strain fitness (log2 ratio) -1 0 1at 445.862 kb on + strandat 445.862 kb on + strandat 445.980 kb on + strand, within IAI46_02095at 445.980 kb on + strand, within IAI46_02095at 445.981 kb on - strand, within IAI46_02095at 446.225 kb on - strand, within IAI46_02095at 446.238 kb on + strand, within IAI46_02095at 446.296 kb on + strand, within IAI46_02095at 446.296 kb on + strand, within IAI46_02095at 446.318 kb on + strand, within IAI46_02095at 446.482 kb on + strand, within IAI46_02095at 446.489 kb on - strand, within IAI46_02095at 446.489 kb on - strand, within IAI46_02095at 446.527 kb on + strand, within IAI46_02095at 446.527 kb on + strand, within IAI46_02095at 446.528 kb on - strand, within IAI46_02095at 446.528 kb on - strand, within IAI46_02095at 446.606 kb on + strand, within IAI46_02095at 446.607 kb on - strand, within IAI46_02095at 446.689 kb on + strand, within IAI46_02095at 446.799 kb on + strandat 446.800 kb on - strandat 446.800 kb on - strandat 446.848 kb on + strandat 446.848 kb on + strandat 446.848 kb on + strandat 446.848 kb on + strandat 446.849 kb on - strandat 446.849 kb on - strandat 446.849 kb on - strandat 446.849 kb on - strandat 446.950 kb on + strand, within IAI46_02100at 446.958 kb on + strand, within IAI46_02100at 446.959 kb on - strand, within IAI46_02100at 446.959 kb on - strand, within IAI46_02100at 447.052 kb on + strand, within IAI46_02100at 447.053 kb on - strand, within IAI46_02100at 447.053 kb on - strand, within IAI46_02100at 447.056 kb on + strand, within IAI46_02100at 447.057 kb on - strand, within IAI46_02100at 447.057 kb on - strand, within IAI46_02100at 447.057 kb on - strand, within IAI46_02100at 447.425 kb on + strandat 447.425 kb on + strandat 447.425 kb on + strandat 447.425 kb on + strandat 447.426 kb on - strandat 447.437 kb on + strandat 447.438 kb on - strandat 447.536 kb on - strand, within IAI46_02105at 447.536 kb on - strand, within IAI46_02105at 447.536 kb on - strand, within IAI46_02105at 447.536 kb on - strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.636 kb on - strand, within IAI46_02105at 447.636 kb on - strand, within IAI46_02105at 447.636 kb on - strand, within IAI46_02105at 447.636 kb on - strand, within IAI46_02105at 447.641 kb on + strand, within IAI46_02105at 447.647 kb on + strand, within IAI46_02105at 447.776 kb on + strand, within IAI46_02105at 447.842 kb on - strandat 447.869 kb on - strandat 447.869 kb on - strandat 448.161 kb on - strand, within IAI46_02110at 448.161 kb on - strand, within IAI46_02110at 448.367 kb on + strand, within IAI46_02110

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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445,862 + -0.1
445,862 + -0.2
445,980 + IAI46_02095 0.20 +0.5
445,980 + IAI46_02095 0.20 +0.2
445,981 - IAI46_02095 0.20 -0.5
446,225 - IAI46_02095 0.42 +0.9
446,238 + IAI46_02095 0.43 -0.1
446,296 + IAI46_02095 0.49 +0.3
446,296 + IAI46_02095 0.49 -1.3
446,318 + IAI46_02095 0.51 -1.0
446,482 + IAI46_02095 0.66 +0.5
446,489 - IAI46_02095 0.66 +0.4
446,489 - IAI46_02095 0.66 +0.6
446,527 + IAI46_02095 0.70 -0.9
446,527 + IAI46_02095 0.70 -0.5
446,528 - IAI46_02095 0.70 +0.8
446,528 - IAI46_02095 0.70 -0.8
446,606 + IAI46_02095 0.77 +0.1
446,607 - IAI46_02095 0.77 -0.3
446,689 + IAI46_02095 0.85 +0.2
446,799 + +1.0
446,800 - -0.2
446,800 - -0.5
446,848 + -0.5
446,848 + +0.8
446,848 + +0.4
446,848 + +0.9
446,849 - +1.3
446,849 - +0.2
446,849 - +0.2
446,849 - +0.9
446,950 + IAI46_02100 0.17 +0.9
446,958 + IAI46_02100 0.18 +1.2
446,959 - IAI46_02100 0.18 -0.0
446,959 - IAI46_02100 0.18 +0.5
447,052 + IAI46_02100 0.34 -0.5
447,053 - IAI46_02100 0.35 -0.5
447,053 - IAI46_02100 0.35 +0.2
447,056 + IAI46_02100 0.35 +1.2
447,057 - IAI46_02100 0.35 +0.5
447,057 - IAI46_02100 0.35 -0.4
447,057 - IAI46_02100 0.35 +0.7
447,425 + +1.5
447,425 + +0.1
447,425 + +1.4
447,425 + +1.4
447,426 - +0.5
447,437 + +0.2
447,438 - -0.7
447,536 - IAI46_02105 0.23 +0.3
447,536 - IAI46_02105 0.23 +0.1
447,536 - IAI46_02105 0.23 -0.1
447,536 - IAI46_02105 0.23 -1.3
447,635 + IAI46_02105 0.45 -0.1
447,635 + IAI46_02105 0.45 -1.0
447,635 + IAI46_02105 0.45 -1.5
447,635 + IAI46_02105 0.45 -0.4
447,635 + IAI46_02105 0.45 +0.1
447,635 + IAI46_02105 0.45 +1.1
447,635 + IAI46_02105 0.45 +0.4
447,635 + IAI46_02105 0.45 -1.0
447,636 - IAI46_02105 0.45 -0.1
447,636 - IAI46_02105 0.45 -1.2
447,636 - IAI46_02105 0.45 +0.4
447,636 - IAI46_02105 0.45 -0.4
447,641 + IAI46_02105 0.46 +0.4
447,647 + IAI46_02105 0.48 +0.4
447,776 + IAI46_02105 0.77 +0.3
447,842 - -0.4
447,869 - -0.3
447,869 - +0.6
448,161 - IAI46_02110 0.39 +0.3
448,161 - IAI46_02110 0.39 +1.3
448,367 + IAI46_02110 0.67 +0.2

Or see this region's nucleotide sequence