Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01770 and IAI46_01775 overlap by 4 nucleotides IAI46_01775 and IAI46_01780 are separated by 2 nucleotides IAI46_01780 and IAI46_01785 are separated by 52 nucleotides
IAI46_01770: IAI46_01770 - outer membrane protein assembly factor, at 382,307 to 384,043
_01770
IAI46_01775: IAI46_01775 - translocation/assembly module TamB, at 384,040 to 387,858
_01775
IAI46_01780: IAI46_01780 - gamma-glutamylcyclotransferase, at 387,861 to 388,208
_01780
IAI46_01785: IAI46_01785 - inorganic diphosphatase, at 388,261 to 388,791
_01785
Position (kb) 384
385
386
387
388 Strain fitness (log2 ratio) -2
-1
0
1
2 at 383.076 kb on + strand, within IAI46_01770 at 383.182 kb on + strand, within IAI46_01770 at 383.252 kb on + strand, within IAI46_01770 at 383.253 kb on - strand, within IAI46_01770 at 383.253 kb on - strand, within IAI46_01770 at 383.253 kb on - strand, within IAI46_01770 at 383.254 kb on + strand, within IAI46_01770 at 383.254 kb on + strand, within IAI46_01770 at 383.255 kb on - strand, within IAI46_01770 at 383.289 kb on - strand, within IAI46_01770 at 383.289 kb on - strand, within IAI46_01770 at 383.289 kb on - strand, within IAI46_01770 at 383.291 kb on + strand, within IAI46_01770 at 383.291 kb on + strand, within IAI46_01770 at 383.291 kb on + strand, within IAI46_01770 at 383.292 kb on - strand, within IAI46_01770 at 383.292 kb on - strand, within IAI46_01770 at 383.292 kb on - strand, within IAI46_01770 at 383.292 kb on - strand, within IAI46_01770 at 383.292 kb on - strand, within IAI46_01770 at 383.333 kb on - strand, within IAI46_01770 at 383.401 kb on + strand, within IAI46_01770 at 383.405 kb on - strand, within IAI46_01770 at 383.405 kb on - strand, within IAI46_01770 at 383.405 kb on - strand, within IAI46_01770 at 383.431 kb on + strand, within IAI46_01770 at 383.431 kb on + strand, within IAI46_01770 at 383.432 kb on - strand, within IAI46_01770 at 383.452 kb on + strand, within IAI46_01770 at 383.452 kb on + strand, within IAI46_01770 at 383.452 kb on + strand, within IAI46_01770 at 383.453 kb on - strand, within IAI46_01770 at 383.453 kb on - strand, within IAI46_01770 at 383.468 kb on + strand, within IAI46_01770 at 383.540 kb on + strand, within IAI46_01770 at 383.540 kb on + strand, within IAI46_01770 at 383.541 kb on - strand, within IAI46_01770 at 383.541 kb on - strand, within IAI46_01770 at 383.744 kb on + strand, within IAI46_01770 at 383.744 kb on + strand, within IAI46_01770 at 383.745 kb on - strand, within IAI46_01770 at 383.745 kb on - strand, within IAI46_01770 at 383.745 kb on - strand, within IAI46_01770 at 383.751 kb on - strand, within IAI46_01770 at 383.825 kb on + strand, within IAI46_01770 at 383.826 kb on - strand, within IAI46_01770 at 383.831 kb on + strand, within IAI46_01770 at 383.831 kb on + strand, within IAI46_01770 at 383.831 kb on + strand, within IAI46_01770 at 383.831 kb on + strand, within IAI46_01770 at 383.831 kb on + strand, within IAI46_01770 at 383.831 kb on + strand, within IAI46_01770 at 383.832 kb on - strand, within IAI46_01770 at 383.928 kb on + strand at 383.929 kb on - strand at 383.934 kb on + strand at 383.935 kb on - strand at 384.018 kb on - strand at 384.018 kb on - strand at 384.039 kb on + strand at 384.039 kb on + strand at 384.040 kb on - strand at 384.040 kb on - strand at 384.040 kb on - strand at 384.040 kb on - strand at 384.109 kb on + strand at 384.109 kb on + strand at 384.109 kb on + strand at 384.109 kb on + strand at 384.138 kb on + strand at 384.138 kb on + strand at 384.138 kb on + strand at 384.139 kb on - strand at 384.139 kb on - strand at 384.139 kb on - strand at 384.139 kb on - strand at 384.139 kb on - strand at 384.218 kb on + strand at 384.232 kb on + strand at 384.432 kb on + strand, within IAI46_01775 at 384.433 kb on - strand, within IAI46_01775 at 384.433 kb on - strand, within IAI46_01775 at 384.435 kb on + strand, within IAI46_01775 at 384.435 kb on + strand, within IAI46_01775 at 384.436 kb on - strand, within IAI46_01775 at 384.436 kb on - strand, within IAI46_01775 at 384.436 kb on - strand, within IAI46_01775 at 384.436 kb on - strand, within IAI46_01775 at 384.436 kb on - strand, within IAI46_01775 at 384.436 kb on - strand, within IAI46_01775 at 384.444 kb on + strand, within IAI46_01775 at 384.444 kb on + strand, within IAI46_01775 at 384.444 kb on + strand, within IAI46_01775 at 384.444 kb on + strand, within IAI46_01775 at 384.445 kb on - strand, within IAI46_01775 at 384.445 kb on - strand, within IAI46_01775 at 384.465 kb on + strand, within IAI46_01775 at 384.466 kb on - strand, within IAI46_01775 at 384.477 kb on - strand, within IAI46_01775 at 384.617 kb on + strand, within IAI46_01775 at 384.617 kb on + strand, within IAI46_01775 at 384.840 kb on + strand, within IAI46_01775 at 384.841 kb on - strand, within IAI46_01775 at 384.879 kb on + strand, within IAI46_01775 at 384.880 kb on - strand, within IAI46_01775 at 384.994 kb on - strand, within IAI46_01775 at 385.056 kb on + strand, within IAI46_01775 at 385.056 kb on + strand, within IAI46_01775 at 385.057 kb on - strand, within IAI46_01775 at 385.057 kb on - strand, within IAI46_01775 at 385.103 kb on + strand, within IAI46_01775 at 385.104 kb on - strand, within IAI46_01775 at 385.104 kb on - strand, within IAI46_01775 at 385.104 kb on - strand, within IAI46_01775 at 385.104 kb on - strand, within IAI46_01775 at 385.240 kb on + strand, within IAI46_01775 at 385.240 kb on + strand, within IAI46_01775 at 385.241 kb on - strand, within IAI46_01775 at 385.241 kb on - strand, within IAI46_01775 at 385.241 kb on - strand, within IAI46_01775 at 385.309 kb on - strand, within IAI46_01775 at 385.495 kb on - strand, within IAI46_01775 at 385.557 kb on + strand, within IAI46_01775 at 385.932 kb on + strand, within IAI46_01775 at 386.097 kb on + strand, within IAI46_01775 at 386.229 kb on + strand, within IAI46_01775 at 386.229 kb on + strand, within IAI46_01775 at 386.358 kb on - strand, within IAI46_01775 at 386.358 kb on - strand, within IAI46_01775 at 386.478 kb on + strand, within IAI46_01775 at 386.478 kb on + strand, within IAI46_01775 at 386.479 kb on - strand, within IAI46_01775 at 386.536 kb on - strand, within IAI46_01775 at 386.558 kb on + strand, within IAI46_01775 at 386.559 kb on - strand, within IAI46_01775 at 386.559 kb on - strand, within IAI46_01775 at 386.559 kb on - strand, within IAI46_01775 at 386.579 kb on + strand, within IAI46_01775 at 386.579 kb on + strand, within IAI46_01775 at 386.580 kb on - strand, within IAI46_01775 at 386.589 kb on + strand, within IAI46_01775 at 386.589 kb on + strand, within IAI46_01775 at 386.590 kb on - strand, within IAI46_01775 at 386.607 kb on + strand, within IAI46_01775 at 386.608 kb on - strand, within IAI46_01775 at 386.608 kb on - strand, within IAI46_01775 at 386.608 kb on - strand, within IAI46_01775 at 386.743 kb on - strand, within IAI46_01775 at 386.752 kb on - strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.753 kb on + strand, within IAI46_01775 at 386.754 kb on - strand, within IAI46_01775 at 386.754 kb on - strand, within IAI46_01775 at 386.754 kb on - strand, within IAI46_01775 at 386.754 kb on - strand, within IAI46_01775 at 386.754 kb on - strand, within IAI46_01775 at 386.754 kb on - strand, within IAI46_01775 at 386.754 kb on - strand, within IAI46_01775 at 386.862 kb on + strand, within IAI46_01775 at 386.863 kb on - strand, within IAI46_01775 at 386.863 kb on - strand, within IAI46_01775 at 386.913 kb on + strand, within IAI46_01775 at 386.914 kb on - strand, within IAI46_01775 at 386.914 kb on - strand, within IAI46_01775 at 386.932 kb on - strand, within IAI46_01775 at 387.052 kb on - strand, within IAI46_01775 at 387.212 kb on + strand, within IAI46_01775 at 387.310 kb on + strand, within IAI46_01775 at 387.310 kb on + strand, within IAI46_01775 at 387.310 kb on + strand, within IAI46_01775 at 387.310 kb on + strand, within IAI46_01775 at 387.311 kb on - strand, within IAI46_01775 at 387.381 kb on + strand, within IAI46_01775 at 387.382 kb on - strand, within IAI46_01775 at 387.382 kb on - strand, within IAI46_01775 at 387.397 kb on - strand, within IAI46_01775 at 387.514 kb on + strand at 387.515 kb on - strand at 387.558 kb on + strand at 387.559 kb on - strand at 387.579 kb on - strand at 387.641 kb on + strand at 387.642 kb on - strand at 387.660 kb on + strand at 387.703 kb on + strand at 387.703 kb on + strand at 387.719 kb on + strand at 387.719 kb on + strand at 387.720 kb on - strand at 387.720 kb on - strand at 387.725 kb on + strand at 387.726 kb on - strand at 387.789 kb on + strand at 387.790 kb on - strand at 387.790 kb on - strand at 387.796 kb on + strand at 387.869 kb on - strand at 387.886 kb on + strand at 388.013 kb on - strand, within IAI46_01780 at 388.027 kb on - strand, within IAI46_01780 at 388.086 kb on + strand, within IAI46_01780 at 388.087 kb on - strand, within IAI46_01780 at 388.088 kb on + strand, within IAI46_01780 at 388.088 kb on + strand, within IAI46_01780 at 388.089 kb on - strand, within IAI46_01780 at 388.089 kb on - strand, within IAI46_01780 at 388.131 kb on + strand, within IAI46_01780 at 388.140 kb on - strand, within IAI46_01780 at 388.140 kb on - strand, within IAI46_01780 at 388.140 kb on - strand, within IAI46_01780 at 388.140 kb on - strand, within IAI46_01780 at 388.169 kb on + strand, within IAI46_01780 at 388.241 kb on + strand at 388.262 kb on + strand at 388.262 kb on + strand at 388.263 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 383,076 + IAI46_01770 0.44 -0.5 383,182 + IAI46_01770 0.50 +0.2 383,252 + IAI46_01770 0.54 -0.8 383,253 - IAI46_01770 0.54 +0.3 383,253 - IAI46_01770 0.54 -0.2 383,253 - IAI46_01770 0.54 -0.2 383,254 + IAI46_01770 0.55 -1.6 383,254 + IAI46_01770 0.55 +1.0 383,255 - IAI46_01770 0.55 -1.6 383,289 - IAI46_01770 0.57 +0.2 383,289 - IAI46_01770 0.57 +0.3 383,289 - IAI46_01770 0.57 +0.4 383,291 + IAI46_01770 0.57 -0.2 383,291 + IAI46_01770 0.57 -0.7 383,291 + IAI46_01770 0.57 +0.0 383,292 - IAI46_01770 0.57 -0.6 383,292 - IAI46_01770 0.57 -1.1 383,292 - IAI46_01770 0.57 -0.1 383,292 - IAI46_01770 0.57 -1.1 383,292 - IAI46_01770 0.57 +0.3 383,333 - IAI46_01770 0.59 +0.7 383,401 + IAI46_01770 0.63 -0.3 383,405 - IAI46_01770 0.63 -0.0 383,405 - IAI46_01770 0.63 -0.6 383,405 - IAI46_01770 0.63 +1.1 383,431 + IAI46_01770 0.65 -1.0 383,431 + IAI46_01770 0.65 -1.2 383,432 - IAI46_01770 0.65 +1.1 383,452 + IAI46_01770 0.66 -0.5 383,452 + IAI46_01770 0.66 +0.6 383,452 + IAI46_01770 0.66 +0.4 383,453 - IAI46_01770 0.66 -0.9 383,453 - IAI46_01770 0.66 +0.0 383,468 + IAI46_01770 0.67 -0.9 383,540 + IAI46_01770 0.71 +0.3 383,540 + IAI46_01770 0.71 +0.0 383,541 - IAI46_01770 0.71 -0.4 383,541 - IAI46_01770 0.71 -0.6 383,744 + IAI46_01770 0.83 -0.6 383,744 + IAI46_01770 0.83 -0.9 383,745 - IAI46_01770 0.83 -0.6 383,745 - IAI46_01770 0.83 +0.1 383,745 - IAI46_01770 0.83 -1.5 383,751 - IAI46_01770 0.83 -1.1 383,825 + IAI46_01770 0.87 +0.6 383,826 - IAI46_01770 0.87 +0.1 383,831 + IAI46_01770 0.88 +0.2 383,831 + IAI46_01770 0.88 +0.0 383,831 + IAI46_01770 0.88 +1.1 383,831 + IAI46_01770 0.88 -0.8 383,831 + IAI46_01770 0.88 -1.0 383,831 + IAI46_01770 0.88 +0.6 383,832 - IAI46_01770 0.88 -2.0 383,928 + +0.1 383,929 - +0.0 383,934 + +0.1 383,935 - -0.9 384,018 - +0.5 384,018 - +0.0 384,039 + -1.3 384,039 + +0.6 384,040 - -0.4 384,040 - +0.3 384,040 - -0.7 384,040 - -1.3 384,109 + -0.5 384,109 + +1.2 384,109 + -0.4 384,109 + -0.3 384,138 + -0.6 384,138 + +0.3 384,138 + -0.6 384,139 - +0.4 384,139 - +0.9 384,139 - -0.5 384,139 - +0.5 384,139 - -0.3 384,218 + +1.0 384,232 + +0.6 384,432 + IAI46_01775 0.10 -0.0 384,433 - IAI46_01775 0.10 -0.2 384,433 - IAI46_01775 0.10 -0.0 384,435 + IAI46_01775 0.10 -0.2 384,435 + IAI46_01775 0.10 -0.3 384,436 - IAI46_01775 0.10 +0.7 384,436 - IAI46_01775 0.10 -0.1 384,436 - IAI46_01775 0.10 +0.5 384,436 - IAI46_01775 0.10 -0.5 384,436 - IAI46_01775 0.10 +0.3 384,436 - IAI46_01775 0.10 -0.3 384,444 + IAI46_01775 0.11 -1.6 384,444 + IAI46_01775 0.11 +1.1 384,444 + IAI46_01775 0.11 -0.4 384,444 + IAI46_01775 0.11 +0.0 384,445 - IAI46_01775 0.11 -1.2 384,445 - IAI46_01775 0.11 -0.2 384,465 + IAI46_01775 0.11 -0.6 384,466 - IAI46_01775 0.11 -0.2 384,477 - IAI46_01775 0.11 -0.3 384,617 + IAI46_01775 0.15 -0.6 384,617 + IAI46_01775 0.15 -0.2 384,840 + IAI46_01775 0.21 +1.1 384,841 - IAI46_01775 0.21 +1.3 384,879 + IAI46_01775 0.22 +0.6 384,880 - IAI46_01775 0.22 -0.6 384,994 - IAI46_01775 0.25 -1.4 385,056 + IAI46_01775 0.27 -0.8 385,056 + IAI46_01775 0.27 +0.2 385,057 - IAI46_01775 0.27 +0.3 385,057 - IAI46_01775 0.27 +1.3 385,103 + IAI46_01775 0.28 -0.1 385,104 - IAI46_01775 0.28 -1.1 385,104 - IAI46_01775 0.28 -0.5 385,104 - IAI46_01775 0.28 -0.0 385,104 - IAI46_01775 0.28 -0.6 385,240 + IAI46_01775 0.31 +0.3 385,240 + IAI46_01775 0.31 +1.0 385,241 - IAI46_01775 0.31 -1.0 385,241 - IAI46_01775 0.31 +0.2 385,241 - IAI46_01775 0.31 +0.0 385,309 - IAI46_01775 0.33 -0.4 385,495 - IAI46_01775 0.38 -0.5 385,557 + IAI46_01775 0.40 -0.1 385,932 + IAI46_01775 0.50 +0.5 386,097 + IAI46_01775 0.54 -0.6 386,229 + IAI46_01775 0.57 -0.1 386,229 + IAI46_01775 0.57 -0.6 386,358 - IAI46_01775 0.61 +0.1 386,358 - IAI46_01775 0.61 +0.6 386,478 + IAI46_01775 0.64 -0.0 386,478 + IAI46_01775 0.64 -0.3 386,479 - IAI46_01775 0.64 +0.1 386,536 - IAI46_01775 0.65 -0.9 386,558 + IAI46_01775 0.66 +0.3 386,559 - IAI46_01775 0.66 -0.9 386,559 - IAI46_01775 0.66 -0.8 386,559 - IAI46_01775 0.66 +2.0 386,579 + IAI46_01775 0.66 +0.5 386,579 + IAI46_01775 0.66 +0.9 386,580 - IAI46_01775 0.67 -0.7 386,589 + IAI46_01775 0.67 -0.2 386,589 + IAI46_01775 0.67 -0.1 386,590 - IAI46_01775 0.67 +0.0 386,607 + IAI46_01775 0.67 +0.4 386,608 - IAI46_01775 0.67 -0.3 386,608 - IAI46_01775 0.67 -0.2 386,608 - IAI46_01775 0.67 -1.6 386,743 - IAI46_01775 0.71 -1.0 386,752 - IAI46_01775 0.71 -0.9 386,753 + IAI46_01775 0.71 +0.3 386,753 + IAI46_01775 0.71 +0.0 386,753 + IAI46_01775 0.71 +0.1 386,753 + IAI46_01775 0.71 -0.2 386,753 + IAI46_01775 0.71 -0.4 386,753 + IAI46_01775 0.71 +0.9 386,753 + IAI46_01775 0.71 -0.4 386,753 + IAI46_01775 0.71 +0.7 386,753 + IAI46_01775 0.71 -0.5 386,753 + IAI46_01775 0.71 -1.3 386,753 + IAI46_01775 0.71 -0.1 386,753 + IAI46_01775 0.71 -0.6 386,754 - IAI46_01775 0.71 -0.3 386,754 - IAI46_01775 0.71 +0.4 386,754 - IAI46_01775 0.71 +0.6 386,754 - IAI46_01775 0.71 -0.3 386,754 - IAI46_01775 0.71 -0.3 386,754 - IAI46_01775 0.71 +0.1 386,754 - IAI46_01775 0.71 -0.5 386,862 + IAI46_01775 0.74 -0.9 386,863 - IAI46_01775 0.74 -0.2 386,863 - IAI46_01775 0.74 -0.9 386,913 + IAI46_01775 0.75 -0.1 386,914 - IAI46_01775 0.75 +0.3 386,914 - IAI46_01775 0.75 -0.0 386,932 - IAI46_01775 0.76 -0.3 387,052 - IAI46_01775 0.79 +0.3 387,212 + IAI46_01775 0.83 -0.9 387,310 + IAI46_01775 0.86 -1.0 387,310 + IAI46_01775 0.86 -0.2 387,310 + IAI46_01775 0.86 -1.3 387,310 + IAI46_01775 0.86 -0.8 387,311 - IAI46_01775 0.86 +0.9 387,381 + IAI46_01775 0.87 -0.1 387,382 - IAI46_01775 0.88 +0.1 387,382 - IAI46_01775 0.88 -0.5 387,397 - IAI46_01775 0.88 +0.2 387,514 + -0.5 387,515 - -0.1 387,558 + -0.1 387,559 - -0.8 387,579 - -0.2 387,641 + +0.7 387,642 - +0.0 387,660 + -0.6 387,703 + -0.7 387,703 + +1.0 387,719 + +0.4 387,719 + -0.6 387,720 - -0.2 387,720 - -0.1 387,725 + -0.8 387,726 - +0.4 387,789 + -0.2 387,790 - -0.3 387,790 - -1.0 387,796 + +0.1 387,869 - -0.1 387,886 + +1.9 388,013 - IAI46_01780 0.44 -0.7 388,027 - IAI46_01780 0.48 +0.2 388,086 + IAI46_01780 0.65 +0.7 388,087 - IAI46_01780 0.65 -0.6 388,088 + IAI46_01780 0.65 +1.2 388,088 + IAI46_01780 0.65 +1.1 388,089 - IAI46_01780 0.66 +0.5 388,089 - IAI46_01780 0.66 +0.5 388,131 + IAI46_01780 0.78 +1.1 388,140 - IAI46_01780 0.80 +1.0 388,140 - IAI46_01780 0.80 -0.6 388,140 - IAI46_01780 0.80 +2.3 388,140 - IAI46_01780 0.80 +1.3 388,169 + IAI46_01780 0.89 +1.2 388,241 + -0.8 388,262 + +1.6 388,262 + +0.5 388,263 - +0.9
Or see this region's nucleotide sequence