Strain Fitness in Serratia liquefaciens MT49 around IAI46_01640

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01635 and IAI46_01640 are separated by 3 nucleotidesIAI46_01640 and IAI46_01645 are separated by 63 nucleotidesIAI46_01645 and IAI46_01650 are separated by 97 nucleotides IAI46_01635: IAI46_01635 - FtsH protease activity modulator HflK, at 358,468 to 359,727 _01635 IAI46_01640: IAI46_01640 - protease modulator HflC, at 359,731 to 360,738 _01640 IAI46_01645: IAI46_01645 - DUF2065 domain-containing protein, at 360,802 to 361,002 _01645 IAI46_01650: IAI46_01650 - adenylosuccinate synthase, at 361,100 to 362,398 _01650 Position (kb) 359 360 361Strain fitness (log2 ratio) -2 -1 0 1 2at 358.731 kb on - strand, within IAI46_01635at 358.760 kb on - strand, within IAI46_01635at 358.934 kb on + strand, within IAI46_01635at 358.934 kb on + strand, within IAI46_01635at 358.934 kb on + strand, within IAI46_01635at 358.934 kb on + strand, within IAI46_01635at 358.934 kb on + strand, within IAI46_01635at 358.935 kb on - strand, within IAI46_01635at 358.984 kb on + strand, within IAI46_01635at 358.984 kb on + strand, within IAI46_01635at 358.985 kb on - strand, within IAI46_01635at 358.985 kb on - strand, within IAI46_01635at 358.985 kb on - strand, within IAI46_01635at 359.062 kb on + strand, within IAI46_01635at 359.062 kb on + strand, within IAI46_01635at 359.062 kb on + strand, within IAI46_01635at 359.062 kb on + strand, within IAI46_01635at 359.062 kb on + strand, within IAI46_01635at 359.063 kb on - strand, within IAI46_01635at 359.063 kb on - strand, within IAI46_01635at 359.095 kb on - strand, within IAI46_01635at 359.136 kb on + strand, within IAI46_01635at 359.146 kb on + strand, within IAI46_01635at 359.146 kb on + strand, within IAI46_01635at 359.146 kb on + strand, within IAI46_01635at 359.147 kb on - strand, within IAI46_01635at 359.257 kb on + strand, within IAI46_01635at 359.257 kb on + strand, within IAI46_01635at 359.257 kb on + strand, within IAI46_01635at 359.257 kb on + strand, within IAI46_01635at 359.257 kb on + strand, within IAI46_01635at 359.258 kb on - strand, within IAI46_01635at 359.345 kb on - strand, within IAI46_01635at 359.346 kb on + strand, within IAI46_01635at 359.346 kb on + strand, within IAI46_01635at 359.346 kb on + strand, within IAI46_01635at 359.347 kb on - strand, within IAI46_01635at 359.356 kb on - strand, within IAI46_01635at 359.446 kb on + strand, within IAI46_01635at 359.446 kb on + strand, within IAI46_01635at 359.446 kb on + strand, within IAI46_01635at 359.447 kb on - strand, within IAI46_01635at 359.447 kb on - strand, within IAI46_01635at 359.447 kb on - strand, within IAI46_01635at 359.447 kb on - strand, within IAI46_01635at 359.447 kb on - strand, within IAI46_01635at 359.577 kb on + strand, within IAI46_01635at 359.577 kb on + strand, within IAI46_01635at 359.578 kb on - strand, within IAI46_01635at 359.725 kb on + strandat 359.726 kb on - strandat 359.726 kb on - strandat 359.736 kb on + strandat 359.736 kb on + strandat 359.737 kb on - strandat 359.748 kb on - strandat 359.779 kb on + strandat 359.779 kb on + strandat 359.780 kb on - strandat 359.780 kb on - strandat 359.780 kb on - strandat 359.780 kb on - strandat 359.780 kb on - strandat 359.780 kb on - strandat 359.780 kb on - strandat 359.872 kb on + strand, within IAI46_01640at 359.872 kb on + strand, within IAI46_01640at 360.004 kb on + strand, within IAI46_01640at 360.004 kb on + strand, within IAI46_01640at 360.018 kb on + strand, within IAI46_01640at 360.019 kb on - strand, within IAI46_01640at 360.093 kb on + strand, within IAI46_01640at 360.094 kb on - strand, within IAI46_01640at 360.094 kb on - strand, within IAI46_01640at 360.165 kb on + strand, within IAI46_01640at 360.408 kb on + strand, within IAI46_01640at 360.408 kb on + strand, within IAI46_01640at 360.408 kb on + strand, within IAI46_01640at 360.409 kb on - strand, within IAI46_01640at 360.493 kb on + strand, within IAI46_01640at 360.494 kb on - strand, within IAI46_01640at 360.494 kb on - strand, within IAI46_01640at 360.528 kb on + strand, within IAI46_01640at 360.529 kb on - strand, within IAI46_01640at 360.538 kb on - strand, within IAI46_01640at 360.538 kb on - strand, within IAI46_01640at 360.610 kb on + strand, within IAI46_01640at 360.611 kb on - strand, within IAI46_01640at 360.638 kb on - strandat 360.749 kb on + strandat 360.749 kb on + strandat 360.749 kb on + strandat 360.750 kb on - strandat 360.894 kb on - strand, within IAI46_01645at 360.894 kb on - strand, within IAI46_01645at 360.921 kb on + strand, within IAI46_01645at 360.921 kb on + strand, within IAI46_01645at 360.922 kb on - strand, within IAI46_01645at 360.922 kb on - strand, within IAI46_01645at 360.948 kb on - strand, within IAI46_01645at 360.971 kb on - strand, within IAI46_01645at 360.971 kb on - strand, within IAI46_01645at 360.974 kb on - strand, within IAI46_01645at 360.974 kb on - strand, within IAI46_01645at 360.974 kb on - strand, within IAI46_01645at 360.985 kb on - strandat 361.020 kb on - strandat 361.147 kb on + strandat 361.524 kb on + strand, within IAI46_01650at 361.667 kb on + strand, within IAI46_01650

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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358,731 - IAI46_01635 0.21 -0.8
358,760 - IAI46_01635 0.23 +0.1
358,934 + IAI46_01635 0.37 -2.1
358,934 + IAI46_01635 0.37 +0.5
358,934 + IAI46_01635 0.37 +0.7
358,934 + IAI46_01635 0.37 +1.0
358,934 + IAI46_01635 0.37 -0.1
358,935 - IAI46_01635 0.37 -1.2
358,984 + IAI46_01635 0.41 -1.1
358,984 + IAI46_01635 0.41 -0.2
358,985 - IAI46_01635 0.41 +1.3
358,985 - IAI46_01635 0.41 -1.6
358,985 - IAI46_01635 0.41 +1.0
359,062 + IAI46_01635 0.47 +0.3
359,062 + IAI46_01635 0.47 +0.2
359,062 + IAI46_01635 0.47 +0.8
359,062 + IAI46_01635 0.47 -0.1
359,062 + IAI46_01635 0.47 +0.3
359,063 - IAI46_01635 0.47 +0.2
359,063 - IAI46_01635 0.47 -0.2
359,095 - IAI46_01635 0.50 +0.2
359,136 + IAI46_01635 0.53 -0.3
359,146 + IAI46_01635 0.54 +0.2
359,146 + IAI46_01635 0.54 +0.8
359,146 + IAI46_01635 0.54 -1.3
359,147 - IAI46_01635 0.54 +0.0
359,257 + IAI46_01635 0.63 -0.3
359,257 + IAI46_01635 0.63 -0.0
359,257 + IAI46_01635 0.63 +1.0
359,257 + IAI46_01635 0.63 +0.5
359,257 + IAI46_01635 0.63 -0.0
359,258 - IAI46_01635 0.63 -0.1
359,345 - IAI46_01635 0.70 -0.1
359,346 + IAI46_01635 0.70 +1.1
359,346 + IAI46_01635 0.70 +1.5
359,346 + IAI46_01635 0.70 +0.4
359,347 - IAI46_01635 0.70 +0.5
359,356 - IAI46_01635 0.70 +2.0
359,446 + IAI46_01635 0.78 +0.1
359,446 + IAI46_01635 0.78 -1.2
359,446 + IAI46_01635 0.78 +0.1
359,447 - IAI46_01635 0.78 -0.4
359,447 - IAI46_01635 0.78 -0.6
359,447 - IAI46_01635 0.78 +0.9
359,447 - IAI46_01635 0.78 +1.4
359,447 - IAI46_01635 0.78 -0.2
359,577 + IAI46_01635 0.88 -0.2
359,577 + IAI46_01635 0.88 +0.1
359,578 - IAI46_01635 0.88 +0.6
359,725 + +1.2
359,726 - -0.5
359,726 - -0.8
359,736 + +0.5
359,736 + -0.3
359,737 - +0.9
359,748 - -0.2
359,779 + -1.0
359,779 + +0.6
359,780 - +0.2
359,780 - -0.7
359,780 - +0.0
359,780 - +0.6
359,780 - +0.4
359,780 - -1.0
359,780 - +0.7
359,872 + IAI46_01640 0.14 +0.6
359,872 + IAI46_01640 0.14 -0.8
360,004 + IAI46_01640 0.27 -0.5
360,004 + IAI46_01640 0.27 +0.2
360,018 + IAI46_01640 0.28 +0.2
360,019 - IAI46_01640 0.29 +1.1
360,093 + IAI46_01640 0.36 +0.1
360,094 - IAI46_01640 0.36 -0.1
360,094 - IAI46_01640 0.36 +0.1
360,165 + IAI46_01640 0.43 -0.1
360,408 + IAI46_01640 0.67 +0.1
360,408 + IAI46_01640 0.67 -0.3
360,408 + IAI46_01640 0.67 +0.0
360,409 - IAI46_01640 0.67 +0.6
360,493 + IAI46_01640 0.76 +0.9
360,494 - IAI46_01640 0.76 +0.8
360,494 - IAI46_01640 0.76 +1.0
360,528 + IAI46_01640 0.79 +0.6
360,529 - IAI46_01640 0.79 -0.2
360,538 - IAI46_01640 0.80 -0.1
360,538 - IAI46_01640 0.80 -0.2
360,610 + IAI46_01640 0.87 +0.9
360,611 - IAI46_01640 0.87 +0.9
360,638 - +0.5
360,749 + +0.4
360,749 + -0.2
360,749 + +0.1
360,750 - +0.1
360,894 - IAI46_01645 0.46 +0.1
360,894 - IAI46_01645 0.46 +0.1
360,921 + IAI46_01645 0.59 +0.9
360,921 + IAI46_01645 0.59 +0.3
360,922 - IAI46_01645 0.60 +0.3
360,922 - IAI46_01645 0.60 -0.0
360,948 - IAI46_01645 0.73 -0.3
360,971 - IAI46_01645 0.84 -0.2
360,971 - IAI46_01645 0.84 -0.5
360,974 - IAI46_01645 0.86 +0.5
360,974 - IAI46_01645 0.86 +0.6
360,974 - IAI46_01645 0.86 +0.5
360,985 - -1.1
361,020 - +0.1
361,147 + -1.1
361,524 + IAI46_01650 0.33 +0.2
361,667 + IAI46_01650 0.44 +0.8

Or see this region's nucleotide sequence