Strain Fitness in Serratia liquefaciens MT49 around IAI46_01400

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01395 and IAI46_01400 overlap by 4 nucleotidesIAI46_01400 and IAI46_01405 are separated by 92 nucleotides IAI46_01395: IAI46_01395 - cation/acetate symporter ActP, at 305,983 to 307,635 _01395 IAI46_01400: IAI46_01400 - DUF485 domain-containing protein, at 307,632 to 307,943 _01400 IAI46_01405: IAI46_01405 - acetate--CoA ligase, at 308,036 to 309,994 _01405 Position (kb) 307 308Strain fitness (log2 ratio) -2 -1 0 1 2at 306.696 kb on + strand, within IAI46_01395at 306.697 kb on - strand, within IAI46_01395at 306.697 kb on - strand, within IAI46_01395at 306.697 kb on - strand, within IAI46_01395at 306.697 kb on - strand, within IAI46_01395at 306.709 kb on - strand, within IAI46_01395at 306.710 kb on + strand, within IAI46_01395at 306.716 kb on + strand, within IAI46_01395at 306.716 kb on + strand, within IAI46_01395at 306.716 kb on + strand, within IAI46_01395at 306.716 kb on + strand, within IAI46_01395at 306.737 kb on + strand, within IAI46_01395at 306.737 kb on + strand, within IAI46_01395at 306.737 kb on + strand, within IAI46_01395at 306.763 kb on - strand, within IAI46_01395at 306.795 kb on + strand, within IAI46_01395at 306.795 kb on + strand, within IAI46_01395at 306.796 kb on - strand, within IAI46_01395at 306.796 kb on - strand, within IAI46_01395at 306.796 kb on - strand, within IAI46_01395at 306.991 kb on + strand, within IAI46_01395at 307.009 kb on - strand, within IAI46_01395at 307.052 kb on + strand, within IAI46_01395at 307.052 kb on + strand, within IAI46_01395at 307.052 kb on + strand, within IAI46_01395at 307.053 kb on - strand, within IAI46_01395at 307.094 kb on + strand, within IAI46_01395at 307.154 kb on + strand, within IAI46_01395at 307.221 kb on - strand, within IAI46_01395at 307.244 kb on + strand, within IAI46_01395at 307.257 kb on + strand, within IAI46_01395at 307.257 kb on + strand, within IAI46_01395at 307.344 kb on + strand, within IAI46_01395at 307.344 kb on + strand, within IAI46_01395at 307.344 kb on + strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.347 kb on - strand, within IAI46_01395at 307.362 kb on + strand, within IAI46_01395at 307.363 kb on - strand, within IAI46_01395at 307.445 kb on + strand, within IAI46_01395at 307.446 kb on - strand, within IAI46_01395at 307.446 kb on - strand, within IAI46_01395at 307.446 kb on - strand, within IAI46_01395at 307.448 kb on + strand, within IAI46_01395at 307.449 kb on - strand, within IAI46_01395at 307.449 kb on - strand, within IAI46_01395at 307.449 kb on - strand, within IAI46_01395at 307.484 kb on + strandat 307.485 kb on - strandat 307.485 kb on - strandat 307.485 kb on - strandat 307.491 kb on + strandat 307.491 kb on + strandat 307.492 kb on - strandat 307.492 kb on - strandat 307.492 kb on - strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.494 kb on - strandat 307.494 kb on - strandat 307.494 kb on - strandat 307.494 kb on - strandat 307.597 kb on + strandat 307.625 kb on - strandat 307.695 kb on + strand, within IAI46_01400at 307.696 kb on - strand, within IAI46_01400at 307.699 kb on + strand, within IAI46_01400at 307.699 kb on + strand, within IAI46_01400at 307.699 kb on + strand, within IAI46_01400at 307.700 kb on - strand, within IAI46_01400at 307.763 kb on + strand, within IAI46_01400at 307.763 kb on + strand, within IAI46_01400at 307.764 kb on - strand, within IAI46_01400at 307.764 kb on - strand, within IAI46_01400at 307.764 kb on - strand, within IAI46_01400at 307.766 kb on + strand, within IAI46_01400at 307.767 kb on - strand, within IAI46_01400at 307.818 kb on + strand, within IAI46_01400at 307.835 kb on - strand, within IAI46_01400at 307.927 kb on + strandat 307.927 kb on + strandat 307.927 kb on + strandat 307.958 kb on + strandat 307.958 kb on + strandat 307.959 kb on - strandat 307.963 kb on - strandat 307.963 kb on - strandat 307.973 kb on + strandat 307.973 kb on + strandat 307.974 kb on - strandat 308.003 kb on - strandat 308.037 kb on + strandat 308.037 kb on + strandat 308.037 kb on + strandat 308.038 kb on - strandat 308.085 kb on - strandat 308.110 kb on + strandat 308.111 kb on - strandat 308.155 kb on + strandat 308.156 kb on - strandat 308.234 kb on + strand, within IAI46_01405at 308.243 kb on - strand, within IAI46_01405at 308.267 kb on - strand, within IAI46_01405at 308.268 kb on + strand, within IAI46_01405at 308.268 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.309 kb on - strand, within IAI46_01405at 308.310 kb on + strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.316 kb on + strand, within IAI46_01405at 308.316 kb on + strand, within IAI46_01405at 308.332 kb on + strand, within IAI46_01405at 308.332 kb on + strand, within IAI46_01405at 308.332 kb on + strand, within IAI46_01405at 308.339 kb on - strand, within IAI46_01405at 308.466 kb on + strand, within IAI46_01405at 308.469 kb on + strand, within IAI46_01405at 308.509 kb on - strand, within IAI46_01405at 308.509 kb on - strand, within IAI46_01405at 308.532 kb on + strand, within IAI46_01405at 308.532 kb on + strand, within IAI46_01405at 308.533 kb on - strand, within IAI46_01405at 308.533 kb on - strand, within IAI46_01405at 308.664 kb on - strand, within IAI46_01405at 308.731 kb on + strand, within IAI46_01405at 308.732 kb on - strand, within IAI46_01405at 308.732 kb on - strand, within IAI46_01405at 308.765 kb on + strand, within IAI46_01405at 308.765 kb on + strand, within IAI46_01405at 308.794 kb on + strand, within IAI46_01405at 308.795 kb on - strand, within IAI46_01405at 308.799 kb on + strand, within IAI46_01405at 308.799 kb on + strand, within IAI46_01405at 308.799 kb on + strand, within IAI46_01405at 308.800 kb on - strand, within IAI46_01405at 308.800 kb on - strand, within IAI46_01405at 308.800 kb on - strand, within IAI46_01405at 308.800 kb on - strand, within IAI46_01405at 308.802 kb on + strand, within IAI46_01405at 308.803 kb on - strand, within IAI46_01405at 308.803 kb on - strand, within IAI46_01405at 308.803 kb on - strand, within IAI46_01405at 308.803 kb on - strand, within IAI46_01405at 308.851 kb on + strand, within IAI46_01405at 308.852 kb on - strand, within IAI46_01405

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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306,696 + IAI46_01395 0.43 +0.6
306,697 - IAI46_01395 0.43 -0.7
306,697 - IAI46_01395 0.43 -0.7
306,697 - IAI46_01395 0.43 -1.1
306,697 - IAI46_01395 0.43 +1.3
306,709 - IAI46_01395 0.44 +0.4
306,710 + IAI46_01395 0.44 -0.2
306,716 + IAI46_01395 0.44 -0.4
306,716 + IAI46_01395 0.44 +0.7
306,716 + IAI46_01395 0.44 +0.5
306,716 + IAI46_01395 0.44 -0.2
306,737 + IAI46_01395 0.46 +1.4
306,737 + IAI46_01395 0.46 +0.7
306,737 + IAI46_01395 0.46 +0.6
306,763 - IAI46_01395 0.47 -0.2
306,795 + IAI46_01395 0.49 +0.1
306,795 + IAI46_01395 0.49 +0.2
306,796 - IAI46_01395 0.49 -0.4
306,796 - IAI46_01395 0.49 -0.4
306,796 - IAI46_01395 0.49 +1.4
306,991 + IAI46_01395 0.61 +0.4
307,009 - IAI46_01395 0.62 +0.1
307,052 + IAI46_01395 0.65 -0.0
307,052 + IAI46_01395 0.65 -0.3
307,052 + IAI46_01395 0.65 +0.4
307,053 - IAI46_01395 0.65 -1.1
307,094 + IAI46_01395 0.67 -0.2
307,154 + IAI46_01395 0.71 -1.6
307,221 - IAI46_01395 0.75 +2.1
307,244 + IAI46_01395 0.76 +0.3
307,257 + IAI46_01395 0.77 +2.0
307,257 + IAI46_01395 0.77 -0.0
307,344 + IAI46_01395 0.82 -0.3
307,344 + IAI46_01395 0.82 +0.1
307,344 + IAI46_01395 0.82 +0.6
307,345 - IAI46_01395 0.82 -1.2
307,345 - IAI46_01395 0.82 +0.7
307,345 - IAI46_01395 0.82 +0.7
307,345 - IAI46_01395 0.82 +0.4
307,347 - IAI46_01395 0.83 -0.3
307,362 + IAI46_01395 0.83 -0.4
307,363 - IAI46_01395 0.83 -0.8
307,445 + IAI46_01395 0.88 -0.6
307,446 - IAI46_01395 0.89 -0.2
307,446 - IAI46_01395 0.89 +0.2
307,446 - IAI46_01395 0.89 +0.2
307,448 + IAI46_01395 0.89 +0.4
307,449 - IAI46_01395 0.89 +0.7
307,449 - IAI46_01395 0.89 +0.3
307,449 - IAI46_01395 0.89 +0.4
307,484 + +0.7
307,485 - -1.2
307,485 - +0.3
307,485 - +0.5
307,491 + -0.5
307,491 + -0.4
307,492 - +0.8
307,492 - +0.2
307,492 - -1.4
307,493 + +1.3
307,493 + +0.4
307,493 + +0.8
307,493 + -0.2
307,493 + -0.8
307,493 + -0.2
307,493 + -1.3
307,494 - +0.4
307,494 - +0.5
307,494 - -0.6
307,494 - -1.9
307,597 + -1.3
307,625 - +1.2
307,695 + IAI46_01400 0.20 +0.2
307,696 - IAI46_01400 0.21 -0.3
307,699 + IAI46_01400 0.21 -0.4
307,699 + IAI46_01400 0.21 -0.7
307,699 + IAI46_01400 0.21 +0.1
307,700 - IAI46_01400 0.22 -0.9
307,763 + IAI46_01400 0.42 +0.2
307,763 + IAI46_01400 0.42 -0.8
307,764 - IAI46_01400 0.42 +0.9
307,764 - IAI46_01400 0.42 +0.1
307,764 - IAI46_01400 0.42 -1.6
307,766 + IAI46_01400 0.43 +0.5
307,767 - IAI46_01400 0.43 -1.2
307,818 + IAI46_01400 0.60 -0.5
307,835 - IAI46_01400 0.65 -0.6
307,927 + -0.1
307,927 + +1.2
307,927 + -0.3
307,958 + +0.0
307,958 + +1.6
307,959 - -0.3
307,963 - -0.4
307,963 - -0.6
307,973 + -1.5
307,973 + +0.2
307,974 - -0.7
308,003 - -0.0
308,037 + +0.6
308,037 + +1.4
308,037 + -0.4
308,038 - +0.4
308,085 - -0.8
308,110 + +0.0
308,111 - -1.1
308,155 + -0.2
308,156 - +0.0
308,234 + IAI46_01405 0.10 +0.6
308,243 - IAI46_01405 0.11 +1.6
308,267 - IAI46_01405 0.12 -0.3
308,268 + IAI46_01405 0.12 -0.1
308,268 + IAI46_01405 0.12 -0.4
308,308 + IAI46_01405 0.14 +0.4
308,308 + IAI46_01405 0.14 -1.1
308,308 + IAI46_01405 0.14 -0.3
308,308 + IAI46_01405 0.14 -0.7
308,308 + IAI46_01405 0.14 +0.4
308,309 - IAI46_01405 0.14 +0.1
308,310 + IAI46_01405 0.14 +0.3
308,311 - IAI46_01405 0.14 +0.2
308,311 - IAI46_01405 0.14 -0.2
308,311 - IAI46_01405 0.14 +0.1
308,311 - IAI46_01405 0.14 +1.4
308,311 - IAI46_01405 0.14 -0.1
308,316 + IAI46_01405 0.14 +0.0
308,316 + IAI46_01405 0.14 +0.9
308,332 + IAI46_01405 0.15 -0.7
308,332 + IAI46_01405 0.15 +0.3
308,332 + IAI46_01405 0.15 -0.2
308,339 - IAI46_01405 0.15 +0.5
308,466 + IAI46_01405 0.22 +1.3
308,469 + IAI46_01405 0.22 +0.6
308,509 - IAI46_01405 0.24 -0.9
308,509 - IAI46_01405 0.24 +0.5
308,532 + IAI46_01405 0.25 +1.4
308,532 + IAI46_01405 0.25 -1.4
308,533 - IAI46_01405 0.25 +0.5
308,533 - IAI46_01405 0.25 +0.0
308,664 - IAI46_01405 0.32 +0.6
308,731 + IAI46_01405 0.35 +0.4
308,732 - IAI46_01405 0.36 -0.8
308,732 - IAI46_01405 0.36 -0.1
308,765 + IAI46_01405 0.37 +0.4
308,765 + IAI46_01405 0.37 -0.0
308,794 + IAI46_01405 0.39 -0.1
308,795 - IAI46_01405 0.39 +0.3
308,799 + IAI46_01405 0.39 +0.3
308,799 + IAI46_01405 0.39 +0.5
308,799 + IAI46_01405 0.39 -1.3
308,800 - IAI46_01405 0.39 +0.5
308,800 - IAI46_01405 0.39 +0.1
308,800 - IAI46_01405 0.39 +0.1
308,800 - IAI46_01405 0.39 +0.7
308,802 + IAI46_01405 0.39 +0.6
308,803 - IAI46_01405 0.39 -2.3
308,803 - IAI46_01405 0.39 -0.1
308,803 - IAI46_01405 0.39 +0.2
308,803 - IAI46_01405 0.39 -0.0
308,851 + IAI46_01405 0.42 +0.6
308,852 - IAI46_01405 0.42 -0.3

Or see this region's nucleotide sequence