Strain Fitness in Serratia liquefaciens MT49 around IAI46_00970

Experiment: dichromate 20 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_00965 and IAI46_00970 overlap by 4 nucleotidesIAI46_00970 and IAI46_00975 overlap by 4 nucleotidesIAI46_00975 and IAI46_00980 are separated by 3 nucleotides IAI46_00965: IAI46_00965 - high-affinity branched-chain amino acid ABC transporter permease LivH, at 216,392 to 217,318 _00965 IAI46_00970: IAI46_00970 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 217,315 to 218,598 _00970 IAI46_00975: IAI46_00975 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG, at 218,595 to 219,362 _00975 IAI46_00980: IAI46_00980 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF, at 219,366 to 220,067 _00980 Position (kb) 217 218 219Strain fitness (log2 ratio) -2 -1 0 1 2at 216.364 kb on + strandat 216.366 kb on + strandat 216.366 kb on + strandat 216.366 kb on + strandat 216.366 kb on + strandat 216.367 kb on - strandat 216.386 kb on + strandat 216.387 kb on - strandat 216.391 kb on + strandat 216.391 kb on + strandat 216.391 kb on + strandat 216.391 kb on + strandat 216.391 kb on + strandat 216.391 kb on + strandat 216.392 kb on - strandat 216.392 kb on - strandat 216.392 kb on - strandat 216.392 kb on - strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.456 kb on - strandat 216.456 kb on - strandat 216.456 kb on - strandat 216.456 kb on - strandat 216.476 kb on + strandat 216.488 kb on + strand, within IAI46_00965at 216.488 kb on + strand, within IAI46_00965at 216.488 kb on + strand, within IAI46_00965at 216.489 kb on - strand, within IAI46_00965at 216.489 kb on - strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.557 kb on - strand, within IAI46_00965at 216.650 kb on + strand, within IAI46_00965at 216.726 kb on + strand, within IAI46_00965at 216.752 kb on + strand, within IAI46_00965at 216.847 kb on + strand, within IAI46_00965at 216.848 kb on - strand, within IAI46_00965at 216.868 kb on + strand, within IAI46_00965at 216.868 kb on + strand, within IAI46_00965at 216.869 kb on - strand, within IAI46_00965at 216.928 kb on + strand, within IAI46_00965at 216.929 kb on - strand, within IAI46_00965at 217.054 kb on - strand, within IAI46_00965at 217.070 kb on + strand, within IAI46_00965at 217.070 kb on + strand, within IAI46_00965at 217.071 kb on - strand, within IAI46_00965at 217.071 kb on - strand, within IAI46_00965at 217.071 kb on - strand, within IAI46_00965at 217.089 kb on - strand, within IAI46_00965at 217.089 kb on - strand, within IAI46_00965at 217.090 kb on + strand, within IAI46_00965at 217.179 kb on + strand, within IAI46_00965at 217.180 kb on - strand, within IAI46_00965at 217.228 kb on + strandat 217.228 kb on + strandat 217.228 kb on + strandat 217.228 kb on + strandat 217.229 kb on - strandat 217.229 kb on - strandat 217.315 kb on - strandat 217.545 kb on - strand, within IAI46_00970at 217.547 kb on + strand, within IAI46_00970at 217.646 kb on + strand, within IAI46_00970at 217.647 kb on - strand, within IAI46_00970at 217.672 kb on + strand, within IAI46_00970at 217.673 kb on - strand, within IAI46_00970at 217.673 kb on - strand, within IAI46_00970at 217.762 kb on + strand, within IAI46_00970at 217.763 kb on - strand, within IAI46_00970at 217.763 kb on - strand, within IAI46_00970at 217.768 kb on + strand, within IAI46_00970at 217.768 kb on + strand, within IAI46_00970at 217.768 kb on + strand, within IAI46_00970at 217.768 kb on + strand, within IAI46_00970at 217.769 kb on - strand, within IAI46_00970at 217.786 kb on + strand, within IAI46_00970at 217.786 kb on + strand, within IAI46_00970at 217.787 kb on - strand, within IAI46_00970at 217.789 kb on + strand, within IAI46_00970at 217.790 kb on - strand, within IAI46_00970at 217.888 kb on + strand, within IAI46_00970at 217.889 kb on - strand, within IAI46_00970at 218.055 kb on + strand, within IAI46_00970at 218.056 kb on - strand, within IAI46_00970at 218.056 kb on - strand, within IAI46_00970at 218.075 kb on - strand, within IAI46_00970at 218.075 kb on - strand, within IAI46_00970at 218.259 kb on + strand, within IAI46_00970at 218.259 kb on + strand, within IAI46_00970at 218.259 kb on + strand, within IAI46_00970at 218.464 kb on + strand, within IAI46_00970at 218.464 kb on + strand, within IAI46_00970at 218.464 kb on + strand, within IAI46_00970at 218.464 kb on + strand, within IAI46_00970at 218.465 kb on - strand, within IAI46_00970at 218.465 kb on - strand, within IAI46_00970at 218.489 kb on + strandat 218.489 kb on + strandat 218.490 kb on - strandat 218.495 kb on + strandat 218.495 kb on + strandat 218.496 kb on - strandat 218.496 kb on - strandat 218.496 kb on - strandat 218.496 kb on - strandat 218.594 kb on + strandat 218.594 kb on + strandat 218.595 kb on - strandat 218.595 kb on - strandat 218.595 kb on - strandat 218.595 kb on - strandat 218.595 kb on - strandat 218.663 kb on + strandat 218.741 kb on + strand, within IAI46_00975at 218.742 kb on - strand, within IAI46_00975at 218.760 kb on + strand, within IAI46_00975at 218.761 kb on - strand, within IAI46_00975at 218.863 kb on + strand, within IAI46_00975at 218.863 kb on + strand, within IAI46_00975at 218.863 kb on + strand, within IAI46_00975at 218.864 kb on - strand, within IAI46_00975at 218.864 kb on - strand, within IAI46_00975at 219.119 kb on - strand, within IAI46_00975at 219.119 kb on - strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.207 kb on - strand, within IAI46_00975at 219.266 kb on + strand, within IAI46_00975at 219.267 kb on - strand, within IAI46_00975at 219.267 kb on - strand, within IAI46_00975at 219.267 kb on - strand, within IAI46_00975at 219.267 kb on - strand, within IAI46_00975at 219.270 kb on + strand, within IAI46_00975at 219.270 kb on + strand, within IAI46_00975at 219.271 kb on - strand, within IAI46_00975at 219.271 kb on - strand, within IAI46_00975at 219.271 kb on - strand, within IAI46_00975at 219.348 kb on + strandat 219.348 kb on + strandat 219.360 kb on + strandat 219.361 kb on - strandat 219.361 kb on - strandat 219.366 kb on - strandat 219.377 kb on + strandat 219.425 kb on + strandat 219.436 kb on + strandat 219.437 kb on - strand, within IAI46_00980at 219.437 kb on - strand, within IAI46_00980at 219.437 kb on - strand, within IAI46_00980at 219.482 kb on + strand, within IAI46_00980at 219.561 kb on - strand, within IAI46_00980

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
remove
216,364 + +0.1
216,366 + -0.2
216,366 + -0.1
216,366 + +0.1
216,366 + +0.5
216,367 - -0.3
216,386 + -0.1
216,387 - -0.9
216,391 + -0.2
216,391 + +0.6
216,391 + -0.6
216,391 + -0.7
216,391 + +0.7
216,391 + -0.3
216,392 - -0.3
216,392 - -1.3
216,392 - -0.6
216,392 - +0.9
216,455 + -0.4
216,455 + +0.6
216,455 + +0.2
216,455 + +0.5
216,455 + -0.3
216,455 + +1.6
216,455 + +0.7
216,455 + +0.7
216,456 - +0.0
216,456 - +1.0
216,456 - +0.3
216,456 - +0.0
216,476 + +1.0
216,488 + IAI46_00965 0.10 +0.0
216,488 + IAI46_00965 0.10 +1.2
216,488 + IAI46_00965 0.10 +0.7
216,489 - IAI46_00965 0.10 -0.7
216,489 - IAI46_00965 0.10 +0.4
216,530 + IAI46_00965 0.15 -0.7
216,530 + IAI46_00965 0.15 -0.3
216,530 + IAI46_00965 0.15 +0.9
216,530 + IAI46_00965 0.15 -0.3
216,530 + IAI46_00965 0.15 +0.3
216,530 + IAI46_00965 0.15 -0.2
216,530 + IAI46_00965 0.15 +0.9
216,531 - IAI46_00965 0.15 -1.1
216,531 - IAI46_00965 0.15 +1.3
216,531 - IAI46_00965 0.15 +0.4
216,531 - IAI46_00965 0.15 +0.5
216,531 - IAI46_00965 0.15 -0.3
216,531 - IAI46_00965 0.15 +0.8
216,531 - IAI46_00965 0.15 -0.3
216,531 - IAI46_00965 0.15 +0.9
216,531 - IAI46_00965 0.15 -0.7
216,531 - IAI46_00965 0.15 +2.4
216,531 - IAI46_00965 0.15 +0.1
216,532 + IAI46_00965 0.15 +0.7
216,532 + IAI46_00965 0.15 -0.8
216,532 + IAI46_00965 0.15 +0.1
216,532 + IAI46_00965 0.15 +0.5
216,532 + IAI46_00965 0.15 -0.8
216,532 + IAI46_00965 0.15 +0.3
216,532 + IAI46_00965 0.15 +0.5
216,532 + IAI46_00965 0.15 -0.3
216,533 - IAI46_00965 0.15 -0.2
216,533 - IAI46_00965 0.15 -0.7
216,533 - IAI46_00965 0.15 +1.0
216,533 - IAI46_00965 0.15 -0.2
216,533 - IAI46_00965 0.15 -0.1
216,533 - IAI46_00965 0.15 +0.3
216,545 + IAI46_00965 0.17 -0.3
216,545 + IAI46_00965 0.17 +0.6
216,545 + IAI46_00965 0.17 -0.1
216,545 + IAI46_00965 0.17 -0.3
216,545 + IAI46_00965 0.17 +0.3
216,545 + IAI46_00965 0.17 +0.2
216,545 + IAI46_00965 0.17 -0.0
216,546 - IAI46_00965 0.17 -0.3
216,546 - IAI46_00965 0.17 +0.2
216,546 - IAI46_00965 0.17 +0.7
216,546 - IAI46_00965 0.17 +0.6
216,546 - IAI46_00965 0.17 +0.3
216,546 - IAI46_00965 0.17 -0.7
216,546 - IAI46_00965 0.17 +0.4
216,557 - IAI46_00965 0.18 +0.8
216,650 + IAI46_00965 0.28 -2.1
216,726 + IAI46_00965 0.36 -0.0
216,752 + IAI46_00965 0.39 -1.7
216,847 + IAI46_00965 0.49 -0.0
216,848 - IAI46_00965 0.49 +0.2
216,868 + IAI46_00965 0.51 +0.3
216,868 + IAI46_00965 0.51 +0.0
216,869 - IAI46_00965 0.51 +0.6
216,928 + IAI46_00965 0.58 +0.5
216,929 - IAI46_00965 0.58 -0.3
217,054 - IAI46_00965 0.71 +0.0
217,070 + IAI46_00965 0.73 -0.7
217,070 + IAI46_00965 0.73 +0.3
217,071 - IAI46_00965 0.73 +0.6
217,071 - IAI46_00965 0.73 +0.3
217,071 - IAI46_00965 0.73 +0.6
217,089 - IAI46_00965 0.75 +0.2
217,089 - IAI46_00965 0.75 -0.1
217,090 + IAI46_00965 0.75 +0.3
217,179 + IAI46_00965 0.85 -0.3
217,180 - IAI46_00965 0.85 +0.1
217,228 + -0.3
217,228 + +0.5
217,228 + +1.1
217,228 + -0.1
217,229 - +0.4
217,229 - +0.2
217,315 - -0.0
217,545 - IAI46_00970 0.18 +1.3
217,547 + IAI46_00970 0.18 -0.2
217,646 + IAI46_00970 0.26 +0.5
217,647 - IAI46_00970 0.26 -0.4
217,672 + IAI46_00970 0.28 -0.4
217,673 - IAI46_00970 0.28 -0.4
217,673 - IAI46_00970 0.28 -0.2
217,762 + IAI46_00970 0.35 +0.1
217,763 - IAI46_00970 0.35 +0.1
217,763 - IAI46_00970 0.35 -0.2
217,768 + IAI46_00970 0.35 -0.5
217,768 + IAI46_00970 0.35 +0.1
217,768 + IAI46_00970 0.35 +0.3
217,768 + IAI46_00970 0.35 -0.1
217,769 - IAI46_00970 0.35 -0.1
217,786 + IAI46_00970 0.37 +0.4
217,786 + IAI46_00970 0.37 +0.1
217,787 - IAI46_00970 0.37 -1.0
217,789 + IAI46_00970 0.37 +0.0
217,790 - IAI46_00970 0.37 +0.1
217,888 + IAI46_00970 0.45 +0.4
217,889 - IAI46_00970 0.45 +0.7
218,055 + IAI46_00970 0.58 +1.3
218,056 - IAI46_00970 0.58 +0.4
218,056 - IAI46_00970 0.58 -0.3
218,075 - IAI46_00970 0.59 -1.5
218,075 - IAI46_00970 0.59 -0.1
218,259 + IAI46_00970 0.74 +0.4
218,259 + IAI46_00970 0.74 -0.9
218,259 + IAI46_00970 0.74 +0.9
218,464 + IAI46_00970 0.89 +0.1
218,464 + IAI46_00970 0.89 +0.5
218,464 + IAI46_00970 0.89 +0.1
218,464 + IAI46_00970 0.89 -0.6
218,465 - IAI46_00970 0.90 -1.0
218,465 - IAI46_00970 0.90 +0.3
218,489 + +0.3
218,489 + +0.4
218,490 - +0.3
218,495 + -0.6
218,495 + +0.2
218,496 - -0.6
218,496 - -0.1
218,496 - +0.4
218,496 - -0.4
218,594 + +0.3
218,594 + -0.3
218,595 - +0.4
218,595 - -0.9
218,595 - +0.4
218,595 - -0.9
218,595 - -0.9
218,663 + -1.0
218,741 + IAI46_00975 0.19 +2.4
218,742 - IAI46_00975 0.19 -0.8
218,760 + IAI46_00975 0.21 -1.0
218,761 - IAI46_00975 0.22 -0.0
218,863 + IAI46_00975 0.35 +0.2
218,863 + IAI46_00975 0.35 +0.2
218,863 + IAI46_00975 0.35 +0.4
218,864 - IAI46_00975 0.35 -0.4
218,864 - IAI46_00975 0.35 +0.7
219,119 - IAI46_00975 0.68 -0.1
219,119 - IAI46_00975 0.68 -0.3
219,206 + IAI46_00975 0.80 -1.8
219,206 + IAI46_00975 0.80 -0.1
219,206 + IAI46_00975 0.80 -0.3
219,206 + IAI46_00975 0.80 -0.2
219,206 + IAI46_00975 0.80 +0.4
219,206 + IAI46_00975 0.80 +0.4
219,206 + IAI46_00975 0.80 +1.3
219,206 + IAI46_00975 0.80 -0.0
219,206 + IAI46_00975 0.80 +0.9
219,207 - IAI46_00975 0.80 +0.5
219,266 + IAI46_00975 0.87 -0.5
219,267 - IAI46_00975 0.88 -0.1
219,267 - IAI46_00975 0.88 -0.2
219,267 - IAI46_00975 0.88 +0.3
219,267 - IAI46_00975 0.88 +0.0
219,270 + IAI46_00975 0.88 -0.1
219,270 + IAI46_00975 0.88 +0.8
219,271 - IAI46_00975 0.88 +0.5
219,271 - IAI46_00975 0.88 +0.7
219,271 - IAI46_00975 0.88 +0.2
219,348 + +1.4
219,348 + +0.1
219,360 + -0.2
219,361 - +0.2
219,361 - +0.3
219,366 - +0.2
219,377 + -0.4
219,425 + +0.2
219,436 + -0.5
219,437 - IAI46_00980 0.10 +0.5
219,437 - IAI46_00980 0.10 +0.1
219,437 - IAI46_00980 0.10 -1.5
219,482 + IAI46_00980 0.17 +0.8
219,561 - IAI46_00980 0.28 -0.7

Or see this region's nucleotide sequence