Strain Fitness in Serratia liquefaciens MT49 around IAI46_00570

Experiment: dichromate 20 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_00565 and IAI46_00570 are separated by 180 nucleotidesIAI46_00570 and IAI46_00575 are separated by 6 nucleotides IAI46_00565: IAI46_00565 - DNA helicase Rep, at 132,587 to 134,611 _00565 IAI46_00570: IAI46_00570 - exopolyphosphatase, at 134,792 to 136,288 _00570 IAI46_00575: IAI46_00575 - ATP-dependent RNA helicase RhlB, at 136,295 to 137,581 _00575 Position (kb) 134 135 136 137Strain fitness (log2 ratio) -2 -1 0 1 2at 134.688 kb on - strandat 134.701 kb on + strandat 134.701 kb on + strandat 134.702 kb on - strandat 134.702 kb on - strandat 134.702 kb on - strandat 134.764 kb on + strandat 134.793 kb on + strandat 134.793 kb on + strandat 134.793 kb on + strandat 134.829 kb on + strandat 134.830 kb on - strandat 134.996 kb on + strand, within IAI46_00570at 135.008 kb on + strand, within IAI46_00570at 135.023 kb on - strand, within IAI46_00570at 135.227 kb on + strand, within IAI46_00570at 135.228 kb on - strand, within IAI46_00570at 135.367 kb on + strand, within IAI46_00570at 135.497 kb on + strand, within IAI46_00570at 135.763 kb on + strand, within IAI46_00570at 135.763 kb on + strand, within IAI46_00570at 135.763 kb on + strand, within IAI46_00570at 135.814 kb on + strand, within IAI46_00570at 135.816 kb on + strand, within IAI46_00570at 135.816 kb on + strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.918 kb on - strand, within IAI46_00570at 135.918 kb on - strand, within IAI46_00570at 135.927 kb on + strand, within IAI46_00570at 135.927 kb on + strand, within IAI46_00570at 135.928 kb on - strand, within IAI46_00570at 136.202 kb on - strandat 136.266 kb on + strandat 136.267 kb on - strandat 136.309 kb on + strandat 136.309 kb on + strandat 136.351 kb on + strandat 136.351 kb on + strandat 136.432 kb on - strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.462 kb on - strand, within IAI46_00575at 136.563 kb on + strand, within IAI46_00575at 136.564 kb on - strand, within IAI46_00575at 136.591 kb on - strand, within IAI46_00575at 136.591 kb on - strand, within IAI46_00575at 136.657 kb on + strand, within IAI46_00575at 136.733 kb on + strand, within IAI46_00575at 136.733 kb on + strand, within IAI46_00575at 136.734 kb on - strand, within IAI46_00575at 136.865 kb on - strand, within IAI46_00575at 136.872 kb on + strand, within IAI46_00575at 136.872 kb on + strand, within IAI46_00575at 136.888 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.930 kb on - strand, within IAI46_00575at 136.968 kb on - strand, within IAI46_00575at 136.974 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.071 kb on - strand, within IAI46_00575at 137.071 kb on - strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.140 kb on - strand, within IAI46_00575at 137.158 kb on + strand, within IAI46_00575at 137.158 kb on + strand, within IAI46_00575at 137.161 kb on + strand, within IAI46_00575at 137.227 kb on - strand, within IAI46_00575

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
remove
134,688 - +0.5
134,701 + +0.4
134,701 + -0.3
134,702 - -0.5
134,702 - -0.0
134,702 - -0.4
134,764 + -0.3
134,793 + +0.2
134,793 + -0.4
134,793 + +0.0
134,829 + -0.3
134,830 - +0.4
134,996 + IAI46_00570 0.14 +0.1
135,008 + IAI46_00570 0.14 -0.4
135,023 - IAI46_00570 0.15 -0.1
135,227 + IAI46_00570 0.29 +0.9
135,228 - IAI46_00570 0.29 +0.1
135,367 + IAI46_00570 0.38 +2.1
135,497 + IAI46_00570 0.47 -0.2
135,763 + IAI46_00570 0.65 +0.9
135,763 + IAI46_00570 0.65 +0.6
135,763 + IAI46_00570 0.65 +1.1
135,814 + IAI46_00570 0.68 -0.2
135,816 + IAI46_00570 0.68 -2.3
135,816 + IAI46_00570 0.68 +0.3
135,817 - IAI46_00570 0.68 +1.2
135,817 - IAI46_00570 0.68 +0.5
135,817 - IAI46_00570 0.68 +1.5
135,817 - IAI46_00570 0.68 +2.0
135,918 - IAI46_00570 0.75 +0.9
135,918 - IAI46_00570 0.75 +2.0
135,927 + IAI46_00570 0.76 +1.3
135,927 + IAI46_00570 0.76 +1.2
135,928 - IAI46_00570 0.76 +1.4
136,202 - +0.9
136,266 + +2.3
136,267 - +0.5
136,309 + -0.3
136,309 + +0.1
136,351 + -0.4
136,351 + +0.1
136,432 - IAI46_00575 0.11 +0.0
136,461 + IAI46_00575 0.13 +0.3
136,461 + IAI46_00575 0.13 +2.0
136,461 + IAI46_00575 0.13 +0.4
136,461 + IAI46_00575 0.13 +0.3
136,462 - IAI46_00575 0.13 +0.0
136,563 + IAI46_00575 0.21 -0.0
136,564 - IAI46_00575 0.21 -0.7
136,591 - IAI46_00575 0.23 -0.8
136,591 - IAI46_00575 0.23 -0.3
136,657 + IAI46_00575 0.28 +0.4
136,733 + IAI46_00575 0.34 +1.7
136,733 + IAI46_00575 0.34 +0.1
136,734 - IAI46_00575 0.34 +0.4
136,865 - IAI46_00575 0.44 -0.9
136,872 + IAI46_00575 0.45 -0.5
136,872 + IAI46_00575 0.45 +1.5
136,888 + IAI46_00575 0.46 -1.3
136,929 + IAI46_00575 0.49 +0.5
136,929 + IAI46_00575 0.49 -0.3
136,929 + IAI46_00575 0.49 +0.0
136,930 - IAI46_00575 0.49 +0.0
136,968 - IAI46_00575 0.52 -0.4
136,974 + IAI46_00575 0.53 -0.5
137,070 + IAI46_00575 0.60 -0.7
137,070 + IAI46_00575 0.60 +0.8
137,070 + IAI46_00575 0.60 +1.1
137,071 - IAI46_00575 0.60 +0.6
137,071 - IAI46_00575 0.60 +1.4
137,074 + IAI46_00575 0.61 -0.5
137,074 + IAI46_00575 0.61 -0.3
137,074 + IAI46_00575 0.61 +1.7
137,074 + IAI46_00575 0.61 -0.7
137,075 - IAI46_00575 0.61 -0.6
137,075 - IAI46_00575 0.61 -2.3
137,075 - IAI46_00575 0.61 -0.9
137,124 + IAI46_00575 0.64 +0.2
137,124 + IAI46_00575 0.64 +0.3
137,124 + IAI46_00575 0.64 -0.2
137,124 + IAI46_00575 0.64 +0.2
137,125 - IAI46_00575 0.64 -0.9
137,125 - IAI46_00575 0.64 +0.5
137,125 - IAI46_00575 0.64 -2.6
137,125 - IAI46_00575 0.64 +1.2
137,125 - IAI46_00575 0.64 -1.1
137,140 - IAI46_00575 0.66 +0.4
137,158 + IAI46_00575 0.67 -0.1
137,158 + IAI46_00575 0.67 +0.2
137,161 + IAI46_00575 0.67 -0.4
137,227 - IAI46_00575 0.72 +0.5

Or see this region's nucleotide sequence