Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2222 and Echvi_2223 are separated by 44 nucleotides Echvi_2223 and Echvi_2224 are separated by 47 nucleotides Echvi_2224 and Echvi_2225 are separated by 271 nucleotides Echvi_2225 and Echvi_2226 are separated by 210 nucleotides Echvi_2226 and Echvi_2227 are separated by 397 nucleotides
Echvi_2222: Echvi_2222 - hypothetical protein, at 2,647,296 to 2,647,469
_2222
Echvi_2223: Echvi_2223 - hypothetical protein, at 2,647,514 to 2,647,831
_2223
Echvi_2224: Echvi_2224 - hypothetical protein, at 2,647,879 to 2,648,034
_2224
Echvi_2225: Echvi_2225 - Transposase DDE domain./Transposase domain (DUF772)., at 2,648,306 to 2,649,658
_2225
Echvi_2226: Echvi_2226 - hypothetical protein, at 2,649,869 to 2,650,105
_2226
Echvi_2227: Echvi_2227 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 2,650,503 to 2,652,392
_2227
Position (kb)
2648
2649
2650 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2647.346 kb on - strand, within Echvi_2222 at 2647.371 kb on + strand, within Echvi_2222 at 2647.371 kb on + strand, within Echvi_2222 at 2647.372 kb on - strand, within Echvi_2222 at 2647.399 kb on + strand, within Echvi_2222 at 2647.486 kb on + strand at 2647.487 kb on - strand at 2647.487 kb on - strand at 2647.489 kb on + strand at 2647.542 kb on - strand at 2647.587 kb on - strand, within Echvi_2223 at 2647.592 kb on - strand, within Echvi_2223 at 2647.615 kb on + strand, within Echvi_2223 at 2647.631 kb on + strand, within Echvi_2223 at 2647.631 kb on + strand, within Echvi_2223 at 2647.634 kb on - strand, within Echvi_2223 at 2647.667 kb on + strand, within Echvi_2223 at 2647.667 kb on + strand, within Echvi_2223 at 2647.687 kb on + strand, within Echvi_2223 at 2647.701 kb on + strand, within Echvi_2223 at 2647.701 kb on + strand, within Echvi_2223 at 2647.727 kb on + strand, within Echvi_2223 at 2647.800 kb on - strand at 2647.815 kb on + strand at 2647.881 kb on - strand at 2647.895 kb on + strand, within Echvi_2224 at 2647.896 kb on - strand, within Echvi_2224 at 2647.896 kb on - strand, within Echvi_2224 at 2647.896 kb on - strand, within Echvi_2224 at 2647.896 kb on - strand, within Echvi_2224 at 2647.996 kb on + strand at 2648.038 kb on + strand at 2648.064 kb on - strand at 2648.068 kb on - strand at 2648.068 kb on - strand at 2648.068 kb on - strand at 2648.068 kb on - strand at 2648.090 kb on + strand at 2648.099 kb on + strand at 2648.099 kb on + strand at 2648.127 kb on - strand at 2648.950 kb on - strand, within Echvi_2225 at 2648.950 kb on - strand, within Echvi_2225 at 2649.764 kb on + strand at 2649.764 kb on + strand at 2649.783 kb on + strand at 2649.804 kb on + strand at 2649.809 kb on + strand at 2649.809 kb on + strand at 2649.870 kb on + strand at 2649.874 kb on + strand at 2649.875 kb on - strand at 2649.945 kb on - strand, within Echvi_2226 at 2649.948 kb on - strand, within Echvi_2226 at 2649.950 kb on + strand, within Echvi_2226 at 2649.963 kb on - strand, within Echvi_2226 at 2649.963 kb on - strand, within Echvi_2226 at 2649.963 kb on - strand, within Echvi_2226 at 2649.995 kb on + strand, within Echvi_2226 at 2650.018 kb on + strand, within Echvi_2226 at 2650.018 kb on + strand, within Echvi_2226 at 2650.018 kb on + strand, within Echvi_2226 at 2650.019 kb on - strand, within Echvi_2226 at 2650.120 kb on - strand at 2650.199 kb on - strand at 2650.292 kb on - strand at 2650.317 kb on + strand at 2650.317 kb on + strand at 2650.317 kb on + strand at 2650.317 kb on + strand at 2650.317 kb on + strand at 2650.318 kb on - strand at 2650.318 kb on - strand at 2650.319 kb on + strand at 2650.399 kb on + strand at 2650.400 kb on - strand at 2650.453 kb on + strand at 2650.454 kb on - strand at 2650.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 2,647,346 - Echvi_2222 0.29 -2.2 2,647,371 + Echvi_2222 0.43 -0.5 2,647,371 + Echvi_2222 0.43 -0.5 2,647,372 - Echvi_2222 0.44 -0.2 2,647,399 + Echvi_2222 0.59 -0.3 2,647,486 + -1.4 2,647,487 - -0.1 2,647,487 - -1.3 2,647,489 + -1.3 2,647,542 - -1.1 2,647,587 - Echvi_2223 0.23 +0.1 2,647,592 - Echvi_2223 0.25 -0.6 2,647,615 + Echvi_2223 0.32 +0.1 2,647,631 + Echvi_2223 0.37 +0.5 2,647,631 + Echvi_2223 0.37 -1.1 2,647,634 - Echvi_2223 0.38 -2.4 2,647,667 + Echvi_2223 0.48 +0.6 2,647,667 + Echvi_2223 0.48 -1.7 2,647,687 + Echvi_2223 0.54 +0.1 2,647,701 + Echvi_2223 0.59 -0.7 2,647,701 + Echvi_2223 0.59 -0.3 2,647,727 + Echvi_2223 0.67 +0.4 2,647,800 - -0.1 2,647,815 + -0.1 2,647,881 - +0.1 2,647,895 + Echvi_2224 0.10 -0.3 2,647,896 - Echvi_2224 0.11 +1.3 2,647,896 - Echvi_2224 0.11 -0.1 2,647,896 - Echvi_2224 0.11 +0.5 2,647,896 - Echvi_2224 0.11 -1.6 2,647,996 + +0.4 2,648,038 + +2.1 2,648,064 - +0.5 2,648,068 - -0.0 2,648,068 - -1.8 2,648,068 - +0.2 2,648,068 - +0.1 2,648,090 + -1.7 2,648,099 + -0.7 2,648,099 + -2.8 2,648,127 - -1.9 2,648,950 - Echvi_2225 0.48 -1.2 2,648,950 - Echvi_2225 0.48 -0.3 2,649,764 + +0.7 2,649,764 + -1.6 2,649,783 + -1.1 2,649,804 + -0.6 2,649,809 + +0.1 2,649,809 + -0.8 2,649,870 + -0.9 2,649,874 + +0.1 2,649,875 - -1.4 2,649,945 - Echvi_2226 0.32 -0.1 2,649,948 - Echvi_2226 0.33 -0.3 2,649,950 + Echvi_2226 0.34 +0.8 2,649,963 - Echvi_2226 0.40 +0.0 2,649,963 - Echvi_2226 0.40 -0.4 2,649,963 - Echvi_2226 0.40 -0.0 2,649,995 + Echvi_2226 0.53 +0.1 2,650,018 + Echvi_2226 0.63 -0.3 2,650,018 + Echvi_2226 0.63 -1.0 2,650,018 + Echvi_2226 0.63 +0.8 2,650,019 - Echvi_2226 0.63 +0.4 2,650,120 - -1.1 2,650,199 - +0.7 2,650,292 - +0.6 2,650,317 + -1.1 2,650,317 + -1.0 2,650,317 + -1.1 2,650,317 + -0.4 2,650,317 + +1.0 2,650,318 - +1.1 2,650,318 - +0.4 2,650,319 + -0.6 2,650,399 + +0.2 2,650,400 - +0.1 2,650,453 + -0.4 2,650,454 - -2.0 2,650,504 + +0.4
Or see this region's nucleotide sequence