Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0944

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
1,088,293	+		Echvi_0942	0.58	-0.7
1,088,293	+		Echvi_0942	0.58	-0.8
1,088,294	-		Echvi_0942	0.58	-0.7
1,088,322	+		Echvi_0942	0.62	-0.2
1,088,322	+		Echvi_0942	0.62	-0.6
1,088,322	+				+1.0
1,088,323	-		Echvi_0942	0.62	+2.0
1,088,323	-		Echvi_0942	0.62	+0.5
1,088,396	-		Echvi_0942	0.72	+0.0
1,088,433	+		Echvi_0942	0.77	+1.2
1,088,434	-		Echvi_0942	0.77	+0.0
1,088,453	+		Echvi_0942	0.79	+0.6
1,088,453	+		Echvi_0942	0.79	+0.1
1,088,453	+		Echvi_0942	0.79	+0.5
1,088,453	+		Echvi_0942	0.79	+1.2
1,088,480	+		Echvi_0942	0.83	+0.7
1,088,483	+		Echvi_0942	0.83	-0.3
1,088,498	+		Echvi_0942	0.85	+0.9
1,088,498	+		Echvi_0942	0.85	+1.2
1,088,499	-		Echvi_0942	0.85	+0.4
1,088,505	+		Echvi_0942	0.86	+0.9
1,088,523	+		Echvi_0942	0.89	+1.0
1,088,523	+		Echvi_0942	0.89	+0.4
1,088,524	-		Echvi_0942	0.89	+1.5
1,088,563	-				+0.2
1,088,563	-				-0.5
1,088,577	-				+2.1
1,088,580	-				-0.1
1,088,580	-				+0.7
1,088,580	-				+1.0
1,088,619	+				+0.3
1,088,642	+				-0.3
1,088,643	-				+0.2
1,088,652	-				+0.9
1,088,652	-				-1.7
1,088,661	-				-0.7
1,088,661	-				-1.1
1,088,689	+				+0.3
1,088,689	+				-0.5
1,088,689	+				+1.1
1,088,690	-				+0.8
1,088,690	-				+0.4
1,088,710	-				-0.9
1,088,781	+		Echvi_0943	0.19	+0.1
1,088,781	+		Echvi_0943	0.19	+1.0
1,088,781	+		Echvi_0943	0.19	+0.3
1,088,822	+		Echvi_0943	0.33	-0.2
1,088,894	+		Echvi_0943	0.57	+0.6
1,088,914	+		Echvi_0943	0.64	-0.3
1,088,915	-		Echvi_0943	0.65	+0.2
1,088,915	-		Echvi_0943	0.65	-1.1
1,088,915	-		Echvi_0943	0.65	-2.1
1,088,921	+		Echvi_0943	0.67	-0.7
1,088,929	+		Echvi_0943	0.69	+0.3
1,088,930	-		Echvi_0943	0.70	+0.8
1,088,930	-		Echvi_0943	0.70	-0.5
1,088,930	-		Echvi_0943	0.70	-0.3
1,088,930	-		Echvi_0943	0.70	-0.0
1,088,949	-		Echvi_0943	0.76	-0.9
1,089,013	+				-1.7
1,089,031	-				-1.1
1,089,038	+				+0.4
1,089,059	+				-0.3
1,089,059	+				+1.0
1,089,059	+				+0.4
1,089,059	+				+0.2
1,089,060	-				+0.2
1,089,060	-				-0.1
1,089,064	+				-0.6
1,089,104	-				-2.1
1,089,155	+				-0.3
1,089,179	+				-1.1
1,089,179	+				+0.9
1,089,180	-				-0.8
1,089,180	-				-0.5
1,089,192	+				+1.3
1,089,192	+				-0.2
1,089,192	+				+0.5
1,089,198	-				+1.4
1,089,198	-				-1.8
1,089,208	+				-1.4
1,089,246	+				+0.6
1,089,252	+				+0.1
1,089,253	-				-1.1
1,089,260	-				-0.4
1,089,263	+				-1.3
1,089,263	+				+1.4
1,089,284	+				-0.4
1,089,289	+				-0.9
1,089,289	+				+0.7
1,089,290	-				-0.1
1,089,299	+				+0.6
1,089,300	-				-2.0
1,089,324	-				-1.6
1,089,324	-				-0.8
1,089,325	+				-0.2
1,089,325	+				+0.3
1,089,326	-				-2.8
1,089,326	-				-0.8
1,089,332	-				-0.7
1,089,336	+				+0.8
1,089,337	-				-1.2
1,089,355	+		Echvi_0944	0.12	-0.7
1,089,355	+		Echvi_0944	0.12	+1.2
1,089,355	+		Echvi_0944	0.12	+0.5
1,089,355	+		Echvi_0944	0.12	-1.3
1,089,356	-		Echvi_0944	0.12	+1.4
1,089,356	-		Echvi_0944	0.12	+1.4
1,089,450	+		Echvi_0944	0.31	-1.4
1,089,451	-		Echvi_0944	0.31	+0.5
1,089,451	-		Echvi_0944	0.31	+0.7
1,089,473	-		Echvi_0944	0.35	-1.8
1,089,473	-		Echvi_0944	0.35	-0.3
1,089,494	+		Echvi_0944	0.39	-0.6
1,089,494	+		Echvi_0944	0.39	-0.9
1,089,494	+		Echvi_0944	0.39	+1.8
1,089,494	+		Echvi_0944	0.39	-0.2
1,089,494	+		Echvi_0944	0.39	-0.8
1,089,495	-		Echvi_0944	0.40	-0.4
1,089,495	-		Echvi_0944	0.40	-0.8
1,089,495	-		Echvi_0944	0.40	+1.6
1,089,504	+		Echvi_0944	0.41	+0.0
1,089,570	+		Echvi_0944	0.54	+0.9
1,089,570	+		Echvi_0944	0.54	+0.2
1,089,571	-		Echvi_0944	0.55	-0.8
1,089,571	-		Echvi_0944	0.55	-1.9
1,089,614	-		Echvi_0944	0.63	+0.1
1,089,663	+		Echvi_0944	0.73	-0.1
1,089,663	+		Echvi_0944	0.73	-0.1
1,089,664	-		Echvi_0944	0.73	-1.2
1,089,664	-		Echvi_0944	0.73	+0.1
1,089,731	-		Echvi_0944	0.86	+0.4
1,089,731	-		Echvi_0944	0.86	+0.2
1,089,731	-		Echvi_0944	0.86	+0.4
1,089,731	-		Echvi_0944	0.86	-0.4
1,089,731	-		Echvi_0944	0.86	+0.5
1,089,731	-		Echvi_0944	0.86	+0.5
1,089,779	+				-0.4
1,089,787	-				+1.6
1,089,787	-				-0.7
1,089,805	+		Echvi_0945	0.44	-0.6
1,089,815	+		Echvi_0945	0.51	-1.1
1,089,832	+		Echvi_0945	0.64	+1.3
1,089,845	+		Echvi_0945	0.73	-1.0
1,089,851	+		Echvi_0945	0.78	+0.8
1,089,856	+		Echvi_0945	0.81	-0.3
1,089,859	-		Echvi_0945	0.83	-0.9
1,089,859	-		Echvi_0945	0.83	+0.3
1,089,896	+				+0.5
1,089,896	+				+1.1
1,089,897	-				-1.8
1,089,916	+				+1.0
1,089,916	+				-0.1
1,089,916	+				-0.4
1,089,917	-				+0.2
1,089,917	-				-1.1
1,089,917	-				+0.4
1,089,917	-				-0.8
1,089,921	+				+0.6
1,089,921	+				-0.2
1,089,921	+				-0.3
1,089,921	+				+0.8
1,089,922	-				-0.1
1,089,922	-				+0.3
1,089,925	+				-1.0
1,089,925	+				-1.1
1,089,926	-				-0.9
1,089,926	-				-0.3
1,089,959	+				-0.6
1,089,959	+				-1.2
1,089,960	-				-0.4
1,089,960	-				-1.0
1,089,963	+				+0.1
1,089,964	-				+0.0
1,089,964	-				+0.2
1,089,980	+				-0.2
1,089,980	+				-0.3
1,089,980	+				+1.8
1,089,998	-				-0.7
1,089,998	-				-0.1
1,090,000	-				+0.4
1,090,011	+				-0.3
1,090,011	+				-0.3
1,090,011	+				-0.0
1,090,011	+				+1.1
1,090,012	-				-0.5
1,090,012	-				+1.6
1,090,012	-				+1.1
1,090,012	-				-0.5
1,090,012	-				+0.3
1,090,012	-				-1.4
1,090,015	-				+0.2
1,090,037	+				-0.2
1,090,038	-				+0.7
1,090,040	+				-0.1
1,090,040	+				-1.0
1,090,040	+				-0.2
1,090,040	+				-1.3
1,090,040	+				-0.1
1,090,040	+				-0.1
1,090,041	-				+1.5
1,090,041	-				-1.8
1,090,041	-				+2.3
1,090,041	-				-0.1
1,090,074	+				-0.7
1,090,094	+				+0.1
1,090,116	-				+1.2
1,090,123	+				-0.3
1,090,124	-				-1.2
1,090,124	-				+0.1
1,090,124	-				+0.7
1,090,134	+				+1.9
1,090,134	+				+0.2
1,090,135	-				-0.7
1,090,135	-				-0.2
1,090,135	-				+0.2
1,090,138	+				-1.8
1,090,138	+				-1.3
1,090,142	+				-1.3
1,090,142	+				+0.2
1,090,152	+				-0.3
1,090,156	+				-0.5
1,090,156	+				+0.2
1,090,156	+				+0.1
1,090,156	+				+0.4
1,090,156	+				+0.1
1,090,157	-				-0.8
1,090,157	-				+0.4
1,090,221	+		Echvi_0946	0.18	+0.8
1,090,222	-		Echvi_0946	0.18	+0.2
1,090,330	+		Echvi_0946	0.47	-0.2
1,090,354	+		Echvi_0946	0.53	+0.4
1,090,354	+		Echvi_0946	0.53	-2.9
1,090,391	+		Echvi_0946	0.63	+0.5
1,090,392	-		Echvi_0946	0.64	-0.1
1,090,393	+		Echvi_0946	0.64	+0.4
1,090,393	+		Echvi_0946	0.64	-1.2
1,090,431	+		Echvi_0946	0.74	+1.0
1,090,450	-		Echvi_0946	0.79	+0.4
1,090,510	+				-0.3
1,090,511	-				+1.2
1,090,532	-				+0.1
1,090,580	+				-1.8
1,090,582	+				-0.4
1,090,583	-				+0.2
1,090,637	+				-0.2
1,090,637	+				+0.3
1,090,637	+				-1.2
1,090,687	-				-0.7
1,090,687	-				+0.3
1,090,741	+				-1.3
1,090,789	-				-0.7