Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0751

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0748 and Echvi_0749 are separated by 86 nucleotidesEchvi_0749 and Echvi_0750 are separated by 100 nucleotidesEchvi_0750 and Echvi_0751 are separated by 115 nucleotidesEchvi_0751 and Echvi_0752 are separated by 12 nucleotides Echvi_0748: Echvi_0748 - dihydroorotase, multifunctional complex type, at 838,910 to 840,259 _0748 Echvi_0749: Echvi_0749 - tRNA, at 840,346 to 840,422 _0749 Echvi_0750: Echvi_0750 - hypothetical protein, at 840,523 to 840,672 _0750 Echvi_0751: Echvi_0751 - glycogen debranching enzyme, archaeal type, putative, at 840,788 to 842,704 _0751 Echvi_0752: Echvi_0752 - Glycosyltransferase, at 842,717 to 844,006 _0752 Position (kb) 840 841 842 843Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 840.502 kb on + strandat 840.529 kb on - strandat 840.595 kb on + strand, within Echvi_0750at 840.595 kb on + strand, within Echvi_0750at 840.595 kb on + strand, within Echvi_0750at 840.595 kb on + strand, within Echvi_0750at 840.596 kb on - strand, within Echvi_0750at 840.596 kb on - strand, within Echvi_0750at 840.596 kb on - strand, within Echvi_0750at 840.671 kb on - strandat 840.674 kb on - strandat 840.737 kb on + strandat 840.794 kb on + strandat 840.833 kb on + strandat 840.878 kb on + strandat 840.879 kb on - strandat 840.897 kb on + strandat 840.897 kb on + strandat 840.897 kb on + strandat 840.904 kb on + strandat 840.905 kb on - strandat 840.905 kb on - strandat 840.905 kb on - strandat 840.905 kb on - strandat 840.905 kb on - strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.970 kb on - strandat 840.970 kb on - strandat 840.970 kb on - strandat 840.970 kb on - strandat 840.970 kb on - strandat 840.970 kb on - strandat 840.973 kb on - strandat 840.973 kb on - strandat 841.034 kb on - strand, within Echvi_0751at 841.037 kb on + strand, within Echvi_0751at 841.037 kb on + strand, within Echvi_0751at 841.050 kb on - strand, within Echvi_0751at 841.066 kb on + strand, within Echvi_0751at 841.067 kb on - strand, within Echvi_0751at 841.277 kb on + strand, within Echvi_0751at 841.278 kb on - strand, within Echvi_0751at 841.397 kb on + strand, within Echvi_0751at 841.397 kb on + strand, within Echvi_0751at 841.398 kb on - strand, within Echvi_0751at 841.398 kb on - strand, within Echvi_0751at 841.401 kb on - strand, within Echvi_0751at 841.412 kb on + strand, within Echvi_0751at 841.457 kb on + strand, within Echvi_0751at 841.458 kb on - strand, within Echvi_0751at 841.458 kb on - strand, within Echvi_0751at 841.458 kb on - strand, within Echvi_0751at 841.630 kb on + strand, within Echvi_0751at 841.700 kb on - strand, within Echvi_0751at 841.809 kb on + strand, within Echvi_0751at 841.828 kb on + strand, within Echvi_0751at 841.828 kb on + strand, within Echvi_0751at 841.880 kb on + strand, within Echvi_0751at 841.881 kb on - strand, within Echvi_0751at 841.922 kb on + strand, within Echvi_0751at 841.976 kb on - strand, within Echvi_0751at 841.985 kb on - strand, within Echvi_0751at 842.080 kb on - strand, within Echvi_0751at 842.111 kb on + strand, within Echvi_0751at 842.126 kb on + strand, within Echvi_0751at 842.130 kb on - strand, within Echvi_0751at 842.280 kb on + strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.281 kb on - strand, within Echvi_0751at 842.355 kb on - strand, within Echvi_0751at 842.355 kb on - strand, within Echvi_0751at 842.355 kb on - strand, within Echvi_0751at 842.355 kb on - strand, within Echvi_0751at 842.407 kb on + strand, within Echvi_0751at 842.407 kb on + strand, within Echvi_0751at 842.407 kb on + strand, within Echvi_0751at 842.408 kb on - strand, within Echvi_0751at 842.408 kb on - strand, within Echvi_0751at 842.408 kb on - strand, within Echvi_0751at 842.414 kb on + strand, within Echvi_0751at 842.418 kb on - strand, within Echvi_0751at 842.450 kb on + strand, within Echvi_0751at 842.607 kb on - strandat 842.688 kb on + strandat 842.689 kb on - strandat 842.693 kb on - strandat 842.693 kb on - strandat 842.702 kb on + strandat 842.724 kb on + strandat 842.724 kb on + strandat 842.724 kb on + strandat 842.724 kb on + strandat 842.724 kb on + strandat 842.725 kb on - strandat 842.725 kb on - strandat 842.725 kb on - strandat 842.725 kb on - strandat 842.756 kb on - strandat 842.844 kb on + strandat 842.845 kb on - strandat 842.845 kb on - strandat 842.845 kb on - strandat 842.846 kb on + strand, within Echvi_0752at 842.846 kb on + strand, within Echvi_0752at 842.865 kb on + strand, within Echvi_0752at 842.866 kb on - strand, within Echvi_0752at 842.892 kb on + strand, within Echvi_0752at 842.903 kb on + strand, within Echvi_0752at 842.904 kb on - strand, within Echvi_0752at 842.905 kb on + strand, within Echvi_0752at 842.905 kb on + strand, within Echvi_0752at 842.906 kb on - strand, within Echvi_0752at 842.942 kb on - strand, within Echvi_0752at 842.942 kb on - strand, within Echvi_0752at 842.945 kb on + strand, within Echvi_0752at 842.945 kb on + strand, within Echvi_0752at 842.946 kb on - strand, within Echvi_0752at 842.946 kb on - strand, within Echvi_0752at 842.955 kb on + strand, within Echvi_0752at 842.956 kb on - strand, within Echvi_0752at 842.976 kb on - strand, within Echvi_0752at 842.993 kb on + strand, within Echvi_0752at 843.011 kb on - strand, within Echvi_0752at 843.080 kb on + strand, within Echvi_0752at 843.081 kb on - strand, within Echvi_0752at 843.198 kb on + strand, within Echvi_0752at 843.198 kb on + strand, within Echvi_0752at 843.232 kb on - strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.235 kb on - strand, within Echvi_0752at 843.235 kb on - strand, within Echvi_0752at 843.290 kb on + strand, within Echvi_0752at 843.290 kb on + strand, within Echvi_0752at 843.291 kb on - strand, within Echvi_0752at 843.291 kb on - strand, within Echvi_0752at 843.326 kb on - strand, within Echvi_0752at 843.471 kb on + strand, within Echvi_0752at 843.472 kb on - strand, within Echvi_0752at 843.472 kb on - strand, within Echvi_0752at 843.515 kb on + strand, within Echvi_0752at 843.515 kb on + strand, within Echvi_0752at 843.515 kb on + strand, within Echvi_0752at 843.561 kb on + strand, within Echvi_0752at 843.561 kb on + strand, within Echvi_0752at 843.702 kb on + strand, within Echvi_0752at 843.702 kb on + strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.704 kb on + strand, within Echvi_0752at 843.704 kb on + strand, within Echvi_0752

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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840,502 + +1.6
840,529 - -0.1
840,595 + Echvi_0750 0.48 -0.9
840,595 + Echvi_0750 0.48 -0.3
840,595 + Echvi_0750 0.48 -2.7
840,595 + Echvi_0750 0.48 -1.1
840,596 - Echvi_0750 0.49 -1.4
840,596 - Echvi_0750 0.49 -2.0
840,596 - Echvi_0750 0.49 -2.3
840,671 - +0.7
840,674 - -0.9
840,737 + -0.0
840,794 + +2.0
840,833 + +0.7
840,878 + -1.1
840,879 - +0.9
840,897 + +0.0
840,897 + -0.4
840,897 + +0.4
840,904 + -1.5
840,905 - +0.9
840,905 - +1.9
840,905 - -0.2
840,905 - -1.8
840,905 - -2.1
840,969 + -0.2
840,969 + +0.4
840,969 + -0.3
840,969 + -1.5
840,969 + +1.4
840,969 + -0.6
840,969 + -2.3
840,969 + -0.7
840,969 + +0.2
840,970 - +0.7
840,970 - -0.7
840,970 - +0.0
840,970 - -1.0
840,970 - -2.4
840,970 - +0.4
840,973 - -1.9
840,973 - -2.6
841,034 - Echvi_0751 0.13 -0.2
841,037 + Echvi_0751 0.13 -0.2
841,037 + Echvi_0751 0.13 -1.7
841,050 - Echvi_0751 0.14 -0.1
841,066 + Echvi_0751 0.15 -1.7
841,067 - Echvi_0751 0.15 -0.9
841,277 + Echvi_0751 0.26 +0.2
841,278 - Echvi_0751 0.26 -0.2
841,397 + Echvi_0751 0.32 -0.3
841,397 + Echvi_0751 0.32 +0.8
841,398 - Echvi_0751 0.32 +0.5
841,398 - Echvi_0751 0.32 +0.2
841,401 - Echvi_0751 0.32 +1.2
841,412 + Echvi_0751 0.33 -1.3
841,457 + Echvi_0751 0.35 +0.3
841,458 - Echvi_0751 0.35 +0.7
841,458 - Echvi_0751 0.35 +0.2
841,458 - Echvi_0751 0.35 -2.4
841,630 + Echvi_0751 0.44 -1.3
841,700 - Echvi_0751 0.48 -0.5
841,809 + Echvi_0751 0.53 -1.2
841,828 + Echvi_0751 0.54 -3.7
841,828 + Echvi_0751 0.54 -1.0
841,880 + Echvi_0751 0.57 -0.3
841,881 - Echvi_0751 0.57 +0.7
841,922 + Echvi_0751 0.59 -0.1
841,976 - Echvi_0751 0.62 +0.2
841,985 - Echvi_0751 0.62 -0.2
842,080 - Echvi_0751 0.67 +1.0
842,111 + Echvi_0751 0.69 +1.7
842,126 + Echvi_0751 0.70 -0.4
842,130 - Echvi_0751 0.70 +0.5
842,280 + Echvi_0751 0.78 -1.6
842,281 - Echvi_0751 0.78 -0.7
842,281 - Echvi_0751 0.78 +1.7
842,281 - Echvi_0751 0.78 +0.6
842,281 - Echvi_0751 0.78 -0.4
842,281 - Echvi_0751 0.78 +0.2
842,281 - Echvi_0751 0.78 +0.1
842,355 - Echvi_0751 0.82 +0.4
842,355 - Echvi_0751 0.82 +0.1
842,355 - Echvi_0751 0.82 -0.5
842,355 - Echvi_0751 0.82 +0.5
842,407 + Echvi_0751 0.84 -0.1
842,407 + Echvi_0751 0.84 -1.7
842,407 + Echvi_0751 0.84 -1.9
842,408 - Echvi_0751 0.85 -1.6
842,408 - Echvi_0751 0.85 +1.2
842,408 - Echvi_0751 0.85 -1.1
842,414 + Echvi_0751 0.85 -0.0
842,418 - Echvi_0751 0.85 -1.2
842,450 + Echvi_0751 0.87 -0.1
842,607 - +0.0
842,688 + -1.0
842,689 - +2.0
842,693 - -0.3
842,693 - +1.5
842,702 + -0.9
842,724 + +0.9
842,724 + -0.4
842,724 + -0.6
842,724 + +1.1
842,724 + +0.6
842,725 - -0.9
842,725 - -0.5
842,725 - +1.6
842,725 - +0.1
842,756 - -0.7
842,844 + -0.9
842,845 - -2.5
842,845 - +0.7
842,845 - +0.6
842,846 + Echvi_0752 0.10 -0.2
842,846 + Echvi_0752 0.10 +1.6
842,865 + Echvi_0752 0.11 -0.0
842,866 - Echvi_0752 0.12 +0.1
842,892 + Echvi_0752 0.14 -0.0
842,903 + Echvi_0752 0.14 -0.4
842,904 - Echvi_0752 0.14 +1.0
842,905 + Echvi_0752 0.15 +0.8
842,905 + Echvi_0752 0.15 -1.2
842,906 - Echvi_0752 0.15 +2.6
842,942 - Echvi_0752 0.17 +0.5
842,942 - Echvi_0752 0.17 +1.8
842,945 + Echvi_0752 0.18 -0.2
842,945 + Echvi_0752 0.18 +0.3
842,946 - Echvi_0752 0.18 -2.5
842,946 - Echvi_0752 0.18 -0.8
842,955 + Echvi_0752 0.18 +1.1
842,956 - Echvi_0752 0.19 +0.5
842,976 - Echvi_0752 0.20 -1.1
842,993 + Echvi_0752 0.21 -1.3
843,011 - Echvi_0752 0.23 -0.2
843,080 + Echvi_0752 0.28 +0.3
843,081 - Echvi_0752 0.28 -0.7
843,198 + Echvi_0752 0.37 +0.3
843,198 + Echvi_0752 0.37 -0.1
843,232 - Echvi_0752 0.40 -0.9
843,234 + Echvi_0752 0.40 -0.3
843,234 + Echvi_0752 0.40 +0.9
843,234 + Echvi_0752 0.40 -2.0
843,234 + Echvi_0752 0.40 -0.1
843,235 - Echvi_0752 0.40 -0.5
843,235 - Echvi_0752 0.40 +0.3
843,290 + Echvi_0752 0.44 +1.8
843,290 + Echvi_0752 0.44 +0.8
843,291 - Echvi_0752 0.44 -0.0
843,291 - Echvi_0752 0.44 +0.5
843,326 - Echvi_0752 0.47 +0.2
843,471 + Echvi_0752 0.58 +0.2
843,472 - Echvi_0752 0.59 +0.2
843,472 - Echvi_0752 0.59 -2.5
843,515 + Echvi_0752 0.62 +0.8
843,515 + Echvi_0752 0.62 +0.7
843,515 + Echvi_0752 0.62 -0.3
843,561 + Echvi_0752 0.65 -0.5
843,561 + Echvi_0752 0.65 -0.5
843,702 + Echvi_0752 0.76 -2.5
843,702 + Echvi_0752 0.76 -0.8
843,703 - Echvi_0752 0.76 +1.6
843,703 - Echvi_0752 0.76 +0.7
843,703 - Echvi_0752 0.76 +0.6
843,703 - Echvi_0752 0.76 -2.1
843,703 - Echvi_0752 0.76 +0.3
843,704 + Echvi_0752 0.77 -1.0
843,704 + Echvi_0752 0.77 -0.5

Or see this region's nucleotide sequence