Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0386 and Echvi_0387 are separated by 16 nucleotides Echvi_0387 and Echvi_0388 are separated by 577 nucleotides Echvi_0388 and Echvi_0389 are separated by 115 nucleotides Echvi_0389 and Echvi_0390 are separated by 185 nucleotides
Echvi_0386: Echvi_0386 - hypothetical protein, at 413,442 to 413,768
_0386
Echvi_0387: Echvi_0387 - Helix-turn-helix., at 413,785 to 414,171
_0387
Echvi_0388: Echvi_0388 - hypothetical protein, at 414,749 to 415,171
_0388
Echvi_0389: Echvi_0389 - hypothetical protein, at 415,287 to 415,751
_0389
Echvi_0390: Echvi_0390 - Relaxase/Mobilisation nuclease domain., at 415,937 to 417,112
_0390
Position (kb) 414
415
416 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 413.768 kb on + strand at 413.768 kb on + strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.780 kb on + strand at 413.781 kb on - strand at 413.781 kb on - strand at 413.793 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.821 kb on - strand at 413.857 kb on + strand, within Echvi_0387 at 413.949 kb on + strand, within Echvi_0387 at 413.972 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.035 kb on + strand, within Echvi_0387 at 414.081 kb on + strand, within Echvi_0387 at 414.082 kb on - strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.112 kb on - strand, within Echvi_0387 at 414.112 kb on - strand, within Echvi_0387 at 414.114 kb on + strand, within Echvi_0387 at 414.114 kb on + strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.121 kb on + strand, within Echvi_0387 at 414.172 kb on - strand at 414.172 kb on - strand at 414.175 kb on + strand at 414.176 kb on - strand at 414.176 kb on - strand at 414.182 kb on + strand at 414.182 kb on + strand at 414.183 kb on - strand at 414.187 kb on - strand at 414.193 kb on - strand at 414.193 kb on - strand at 414.204 kb on + strand at 414.204 kb on + strand at 414.233 kb on + strand at 414.233 kb on + strand at 414.234 kb on - strand at 414.237 kb on + strand at 414.246 kb on - strand at 414.246 kb on - strand at 414.247 kb on + strand at 414.314 kb on + strand at 414.314 kb on + strand at 414.315 kb on - strand at 414.320 kb on + strand at 414.320 kb on + strand at 414.321 kb on - strand at 414.321 kb on - strand at 414.460 kb on + strand at 414.479 kb on - strand at 414.499 kb on + strand at 414.512 kb on + strand at 414.520 kb on + strand at 414.520 kb on + strand at 414.523 kb on + strand at 414.551 kb on + strand at 414.552 kb on - strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.574 kb on - strand at 414.588 kb on + strand at 414.588 kb on + strand at 414.601 kb on - strand at 414.603 kb on + strand at 414.634 kb on - strand at 414.640 kb on - strand at 414.653 kb on - strand at 414.669 kb on - strand at 414.880 kb on - strand, within Echvi_0388 at 414.882 kb on + strand, within Echvi_0388 at 414.900 kb on + strand, within Echvi_0388 at 414.911 kb on - strand, within Echvi_0388 at 414.941 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 415.006 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.147 kb on - strand at 415.166 kb on - strand at 415.186 kb on + strand at 415.190 kb on + strand at 415.190 kb on + strand at 415.190 kb on + strand at 415.191 kb on - strand at 415.191 kb on - strand at 415.259 kb on + strand at 415.260 kb on - strand at 415.269 kb on - strand at 415.280 kb on + strand at 415.280 kb on + strand at 415.316 kb on - strand at 415.335 kb on + strand, within Echvi_0389 at 415.356 kb on + strand, within Echvi_0389 at 415.356 kb on + strand, within Echvi_0389 at 415.357 kb on - strand, within Echvi_0389 at 415.385 kb on - strand, within Echvi_0389 at 415.385 kb on - strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.430 kb on - strand, within Echvi_0389 at 415.447 kb on + strand, within Echvi_0389 at 415.468 kb on + strand, within Echvi_0389 at 415.468 kb on + strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.482 kb on - strand, within Echvi_0389 at 415.482 kb on - strand, within Echvi_0389 at 415.555 kb on - strand, within Echvi_0389 at 415.560 kb on - strand, within Echvi_0389 at 415.652 kb on - strand, within Echvi_0389 at 415.665 kb on - strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.675 kb on - strand, within Echvi_0389 at 415.691 kb on + strand, within Echvi_0389 at 415.692 kb on - strand, within Echvi_0389 at 415.750 kb on - strand at 415.754 kb on + strand at 415.755 kb on - strand at 415.804 kb on + strand at 415.804 kb on + strand at 415.805 kb on - strand at 415.815 kb on + strand at 415.815 kb on + strand at 415.815 kb on + strand at 415.817 kb on + strand at 415.817 kb on + strand at 415.818 kb on - strand at 415.818 kb on - strand at 415.825 kb on + strand at 415.826 kb on - strand at 415.826 kb on - strand at 415.826 kb on - strand at 415.837 kb on + strand at 415.896 kb on - strand at 415.905 kb on - strand at 415.905 kb on - strand at 415.913 kb on - strand at 415.948 kb on + strand at 415.948 kb on + strand at 415.949 kb on - strand at 415.991 kb on + strand at 416.035 kb on + strand at 416.045 kb on - strand at 416.065 kb on + strand, within Echvi_0390 at 416.065 kb on + strand, within Echvi_0390 at 416.071 kb on - strand, within Echvi_0390 at 416.109 kb on - strand, within Echvi_0390 at 416.165 kb on + strand, within Echvi_0390
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 413,768 + -0.7 413,768 + +0.2 413,769 - +0.4 413,769 - -1.9 413,769 - -0.5 413,780 + +0.5 413,781 - -0.0 413,781 - +1.1 413,793 + +1.4 413,820 + +0.6 413,820 + -0.3 413,820 + +0.2 413,820 + +1.1 413,820 + -0.3 413,821 - +0.3 413,857 + Echvi_0387 0.19 -0.0 413,949 + Echvi_0387 0.42 -0.0 413,972 + Echvi_0387 0.48 +0.4 414,026 + Echvi_0387 0.62 -2.1 414,026 + Echvi_0387 0.62 +2.1 414,027 - Echvi_0387 0.63 -0.7 414,027 - Echvi_0387 0.63 +0.2 414,027 - Echvi_0387 0.63 +0.2 414,027 - Echvi_0387 0.63 -1.3 414,035 + Echvi_0387 0.65 +1.3 414,081 + Echvi_0387 0.76 -0.1 414,082 - Echvi_0387 0.77 -0.0 414,111 + Echvi_0387 0.84 +0.1 414,111 + Echvi_0387 0.84 -2.8 414,111 + Echvi_0387 0.84 +0.4 414,112 - Echvi_0387 0.84 -2.1 414,112 - Echvi_0387 0.84 +1.3 414,114 + Echvi_0387 0.85 -0.5 414,114 + Echvi_0387 0.85 -0.4 414,115 - Echvi_0387 0.85 -0.6 414,115 - Echvi_0387 0.85 -0.6 414,115 - Echvi_0387 0.85 -0.9 414,115 - Echvi_0387 0.85 -3.1 414,115 - Echvi_0387 0.85 +0.4 414,115 - Echvi_0387 0.85 -1.2 414,121 + Echvi_0387 0.87 -2.0 414,172 - -0.5 414,172 - +1.1 414,175 + -0.2 414,176 - -1.1 414,176 - -1.7 414,182 + +0.2 414,182 + -0.1 414,183 - -0.3 414,187 - +0.1 414,193 - +0.5 414,193 - +0.9 414,204 + +0.6 414,204 + -0.1 414,233 + +0.0 414,233 + -0.8 414,234 - +0.7 414,237 + -0.1 414,246 - -0.1 414,246 - -1.8 414,247 + +0.9 414,314 + -0.6 414,314 + -0.9 414,315 - -0.5 414,320 + +0.4 414,320 + -0.1 414,321 - -0.8 414,321 - +0.9 414,460 + -0.4 414,479 - -0.3 414,499 + +0.2 414,512 + +0.2 414,520 + -0.3 414,520 + -1.0 414,523 + -1.2 414,551 + +0.0 414,552 - -0.9 414,567 + +0.4 414,567 + -1.5 414,567 + +0.5 414,567 + -1.4 414,567 + +0.8 414,574 - -0.1 414,588 + -0.2 414,588 + +0.7 414,601 - +0.3 414,603 + -0.1 414,634 - +3.2 414,640 - -0.3 414,653 - -0.7 414,669 - -1.2 414,880 - Echvi_0388 0.31 -0.9 414,882 + Echvi_0388 0.31 -1.4 414,900 + Echvi_0388 0.36 +0.4 414,911 - Echvi_0388 0.38 +0.8 414,941 - Echvi_0388 0.45 -0.3 414,992 - Echvi_0388 0.57 -0.6 414,992 - Echvi_0388 0.57 -2.1 414,992 - Echvi_0388 0.57 -0.2 414,992 - Echvi_0388 0.57 -0.2 415,006 + Echvi_0388 0.61 -1.4 415,048 + Echvi_0388 0.71 -1.3 415,048 + Echvi_0388 0.71 -1.8 415,049 - Echvi_0388 0.71 +0.8 415,049 - Echvi_0388 0.71 -0.2 415,049 - Echvi_0388 0.71 -1.2 415,147 - +0.2 415,166 - -0.3 415,186 + -0.2 415,190 + -1.2 415,190 + +0.6 415,190 + -0.2 415,191 - +0.9 415,191 - -0.2 415,259 + -0.3 415,260 - -0.7 415,269 - +0.1 415,280 + -2.3 415,280 + +0.1 415,316 - -0.8 415,335 + Echvi_0389 0.10 -0.5 415,356 + Echvi_0389 0.15 +0.3 415,356 + Echvi_0389 0.15 +1.0 415,357 - Echvi_0389 0.15 -1.9 415,385 - Echvi_0389 0.21 -1.0 415,385 - Echvi_0389 0.21 -0.1 415,411 + Echvi_0389 0.27 -0.6 415,411 + Echvi_0389 0.27 -0.1 415,411 + Echvi_0389 0.27 +0.3 415,411 + Echvi_0389 0.27 +0.2 415,412 - Echvi_0389 0.27 +1.2 415,412 - Echvi_0389 0.27 -0.6 415,412 - Echvi_0389 0.27 +1.2 415,430 - Echvi_0389 0.31 +0.9 415,447 + Echvi_0389 0.34 -1.0 415,468 + Echvi_0389 0.39 -0.7 415,468 + Echvi_0389 0.39 -0.6 415,469 - Echvi_0389 0.39 -0.1 415,469 - Echvi_0389 0.39 -1.1 415,469 - Echvi_0389 0.39 -0.5 415,481 + Echvi_0389 0.42 +0.6 415,481 + Echvi_0389 0.42 +1.2 415,481 + Echvi_0389 0.42 -0.1 415,482 - Echvi_0389 0.42 +0.1 415,482 - Echvi_0389 0.42 +1.5 415,555 - Echvi_0389 0.58 +0.1 415,560 - Echvi_0389 0.59 -1.5 415,652 - Echvi_0389 0.78 +0.4 415,665 - Echvi_0389 0.81 -0.2 415,670 + Echvi_0389 0.82 +1.3 415,670 + Echvi_0389 0.82 +0.9 415,670 + Echvi_0389 0.82 -1.8 415,670 + Echvi_0389 0.82 -1.2 415,670 + Echvi_0389 0.82 -0.3 415,670 + Echvi_0389 0.82 +1.4 415,670 + Echvi_0389 0.82 +0.7 415,670 + Echvi_0389 0.82 +1.1 415,670 + Echvi_0389 0.82 +0.3 415,670 + Echvi_0389 0.82 -1.0 415,670 + Echvi_0389 0.82 +0.2 415,670 + Echvi_0389 0.82 -0.2 415,671 - Echvi_0389 0.83 -1.4 415,671 - Echvi_0389 0.83 -1.5 415,671 - Echvi_0389 0.83 +0.3 415,671 - Echvi_0389 0.83 -0.5 415,671 - Echvi_0389 0.83 +0.5 415,671 - Echvi_0389 0.83 -1.9 415,671 - Echvi_0389 0.83 -1.0 415,671 - Echvi_0389 0.83 -2.1 415,671 - Echvi_0389 0.83 -1.3 415,671 - Echvi_0389 0.83 +0.4 415,671 - Echvi_0389 0.83 +0.3 415,671 - Echvi_0389 0.83 +0.3 415,674 + Echvi_0389 0.83 -2.0 415,674 + Echvi_0389 0.83 +0.9 415,674 + Echvi_0389 0.83 +0.3 415,675 - Echvi_0389 0.83 +0.4 415,691 + Echvi_0389 0.87 +0.0 415,692 - Echvi_0389 0.87 +0.3 415,750 - +1.1 415,754 + +0.7 415,755 - -0.7 415,804 + -0.0 415,804 + +0.4 415,805 - +0.2 415,815 + +0.5 415,815 + -0.5 415,815 + +0.2 415,817 + +2.7 415,817 + +0.2 415,818 - +1.1 415,818 - -1.9 415,825 + -2.2 415,826 - -0.8 415,826 - -0.7 415,826 - +0.1 415,837 + +0.3 415,896 - -1.3 415,905 - +0.5 415,905 - +1.5 415,913 - +0.6 415,948 + +1.3 415,948 + -0.4 415,949 - -0.7 415,991 + -0.6 416,035 + -0.9 416,045 - -0.3 416,065 + Echvi_0390 0.11 -0.1 416,065 + Echvi_0390 0.11 -0.3 416,071 - Echvi_0390 0.11 +0.1 416,109 - Echvi_0390 0.15 +0.8 416,165 + Echvi_0390 0.19 -4.1
Or see this region's nucleotide sequence