Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0044 and Echvi_0045 are separated by 185 nucleotides Echvi_0045 and Echvi_0046 are separated by 150 nucleotides Echvi_0046 and Echvi_0047 are separated by 3 nucleotides
Echvi_0044: Echvi_0044 - protein RecA, at 41,564 to 42,592
_0044
Echvi_0045: Echvi_0045 - Protein of unknown function (DUF3108)., at 42,778 to 43,566
_0045
Echvi_0046: Echvi_0046 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 43,717 to 44,406
_0046
Echvi_0047: Echvi_0047 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 44,410 to 45,468
_0047
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.796 kb on + strand, within Echvi_0044 at 41.797 kb on - strand, within Echvi_0044 at 41.800 kb on + strand, within Echvi_0044 at 41.801 kb on - strand, within Echvi_0044 at 41.926 kb on + strand, within Echvi_0044 at 41.937 kb on + strand, within Echvi_0044 at 42.282 kb on + strand, within Echvi_0044 at 42.289 kb on + strand, within Echvi_0044 at 42.545 kb on - strand at 42.593 kb on - strand at 42.593 kb on - strand at 42.593 kb on - strand at 42.595 kb on - strand at 42.595 kb on - strand at 42.623 kb on - strand at 42.713 kb on - strand at 42.715 kb on + strand at 42.717 kb on + strand at 42.717 kb on + strand at 42.718 kb on - strand at 42.718 kb on - strand at 42.718 kb on - strand at 42.740 kb on - strand at 42.775 kb on + strand at 42.775 kb on + strand at 42.778 kb on - strand at 42.791 kb on + strand at 42.829 kb on + strand at 42.858 kb on + strand, within Echvi_0045 at 42.858 kb on + strand, within Echvi_0045 at 42.960 kb on - strand, within Echvi_0045 at 43.005 kb on - strand, within Echvi_0045 at 43.020 kb on - strand, within Echvi_0045 at 43.020 kb on - strand, within Echvi_0045 at 43.023 kb on + strand, within Echvi_0045 at 43.024 kb on - strand, within Echvi_0045 at 43.140 kb on + strand, within Echvi_0045 at 43.191 kb on - strand, within Echvi_0045 at 43.234 kb on - strand, within Echvi_0045 at 43.252 kb on + strand, within Echvi_0045 at 43.253 kb on - strand, within Echvi_0045 at 43.253 kb on - strand, within Echvi_0045 at 43.255 kb on - strand, within Echvi_0045 at 43.255 kb on - strand, within Echvi_0045 at 43.294 kb on - strand, within Echvi_0045 at 43.306 kb on - strand, within Echvi_0045 at 43.330 kb on + strand, within Echvi_0045 at 43.330 kb on + strand, within Echvi_0045 at 43.330 kb on + strand, within Echvi_0045 at 43.331 kb on - strand, within Echvi_0045 at 43.331 kb on - strand, within Echvi_0045 at 43.348 kb on + strand, within Echvi_0045 at 43.430 kb on + strand, within Echvi_0045 at 43.431 kb on - strand, within Echvi_0045 at 43.449 kb on + strand, within Echvi_0045 at 43.450 kb on - strand, within Echvi_0045 at 43.452 kb on + strand, within Echvi_0045 at 43.453 kb on - strand, within Echvi_0045 at 43.453 kb on - strand, within Echvi_0045 at 43.525 kb on - strand at 43.565 kb on - strand at 43.751 kb on + strand at 43.786 kb on + strand, within Echvi_0046 at 43.807 kb on + strand, within Echvi_0046 at 44.004 kb on - strand, within Echvi_0046 at 44.019 kb on - strand, within Echvi_0046 at 44.019 kb on - strand, within Echvi_0046 at 44.034 kb on + strand, within Echvi_0046 at 44.158 kb on - strand, within Echvi_0046 at 44.316 kb on - strand, within Echvi_0046 at 44.404 kb on + strand at 44.409 kb on + strand at 44.409 kb on + strand at 44.409 kb on + strand at 44.410 kb on - strand at 44.454 kb on + strand at 44.454 kb on + strand at 44.455 kb on - strand at 44.456 kb on + strand at 44.456 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 41,796 + Echvi_0044 0.23 -0.8 41,797 - Echvi_0044 0.23 -0.5 41,800 + Echvi_0044 0.23 -0.4 41,801 - Echvi_0044 0.23 -1.1 41,926 + Echvi_0044 0.35 -0.5 41,937 + Echvi_0044 0.36 -0.5 42,282 + Echvi_0044 0.70 +0.5 42,289 + Echvi_0044 0.70 -1.6 42,545 - -1.7 42,593 - +1.1 42,593 - +1.1 42,593 - -0.9 42,595 - -1.0 42,595 - -0.7 42,623 - -1.4 42,713 - -0.7 42,715 + -0.1 42,717 + +0.3 42,717 + +0.1 42,718 - +1.1 42,718 - +1.6 42,718 - -1.9 42,740 - -1.3 42,775 + +1.6 42,775 + +0.5 42,778 - -2.1 42,791 + -0.3 42,829 + +1.5 42,858 + Echvi_0045 0.10 +1.2 42,858 + Echvi_0045 0.10 -0.1 42,960 - Echvi_0045 0.23 +0.3 43,005 - Echvi_0045 0.29 +0.8 43,020 - Echvi_0045 0.31 -2.4 43,020 - Echvi_0045 0.31 +0.2 43,023 + Echvi_0045 0.31 +0.5 43,024 - Echvi_0045 0.31 -2.4 43,140 + Echvi_0045 0.46 +0.4 43,191 - Echvi_0045 0.52 -1.2 43,234 - Echvi_0045 0.58 -0.1 43,252 + Echvi_0045 0.60 -2.8 43,253 - Echvi_0045 0.60 +2.3 43,253 - Echvi_0045 0.60 -0.4 43,255 - Echvi_0045 0.60 -2.5 43,255 - Echvi_0045 0.60 +0.9 43,294 - Echvi_0045 0.65 -1.0 43,306 - Echvi_0045 0.67 -0.6 43,330 + Echvi_0045 0.70 -0.7 43,330 + Echvi_0045 0.70 +0.9 43,330 + Echvi_0045 0.70 -1.9 43,331 - Echvi_0045 0.70 -0.2 43,331 - Echvi_0045 0.70 -0.6 43,348 + Echvi_0045 0.72 -0.7 43,430 + Echvi_0045 0.83 -0.9 43,431 - Echvi_0045 0.83 +0.2 43,449 + Echvi_0045 0.85 +0.3 43,450 - Echvi_0045 0.85 -0.2 43,452 + Echvi_0045 0.85 -2.1 43,453 - Echvi_0045 0.86 -0.2 43,453 - Echvi_0045 0.86 -0.7 43,525 - +0.4 43,565 - +1.2 43,751 + -0.9 43,786 + Echvi_0046 0.10 +0.2 43,807 + Echvi_0046 0.13 -0.1 44,004 - Echvi_0046 0.42 -0.9 44,019 - Echvi_0046 0.44 +0.5 44,019 - Echvi_0046 0.44 -2.0 44,034 + Echvi_0046 0.46 -0.2 44,158 - Echvi_0046 0.64 -0.1 44,316 - Echvi_0046 0.87 -1.0 44,404 + -0.8 44,409 + +0.3 44,409 + +0.5 44,409 + -0.4 44,410 - +1.6 44,454 + -1.3 44,454 + -0.7 44,455 - +0.9 44,456 + -0.3 44,456 + -0.8
Or see this region's nucleotide sequence