Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3556

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3554 and EX28DRAFT_3555 overlap by 20 nucleotidesEX28DRAFT_3555 and EX28DRAFT_3556 are separated by 2 nucleotidesEX28DRAFT_3556 and EX28DRAFT_3557 are separated by 32 nucleotidesEX28DRAFT_3557 and EX28DRAFT_3558 overlap by 4 nucleotides EX28DRAFT_3554: EX28DRAFT_3554 - P pilus assembly protein, porin PapC, at 217,649 to 219,877 _3554 EX28DRAFT_3555: EX28DRAFT_3555 - P pilus assembly protein, chaperone PapD, at 219,858 to 220,634 _3555 EX28DRAFT_3556: EX28DRAFT_3556 - Uncharacterized secreted protein, at 220,637 to 221,131 _3556 EX28DRAFT_3557: EX28DRAFT_3557 - Bacterial regulatory proteins, luxR family, at 221,164 to 221,706 _3557 EX28DRAFT_3558: EX28DRAFT_3558 - EAL domain, at 221,703 to 222,341 _3558 Position (kb) 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1at 219.842 kb on + strandat 219.842 kb on + strandat 219.843 kb on - strandat 219.955 kb on + strand, within EX28DRAFT_3555at 220.030 kb on + strand, within EX28DRAFT_3555at 220.046 kb on + strand, within EX28DRAFT_3555at 220.101 kb on + strand, within EX28DRAFT_3555at 220.101 kb on + strand, within EX28DRAFT_3555at 220.101 kb on + strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.205 kb on + strand, within EX28DRAFT_3555at 220.340 kb on + strand, within EX28DRAFT_3555at 220.343 kb on + strand, within EX28DRAFT_3555at 220.344 kb on - strand, within EX28DRAFT_3555at 220.451 kb on - strand, within EX28DRAFT_3555at 220.490 kb on + strand, within EX28DRAFT_3555at 220.641 kb on + strandat 220.652 kb on + strandat 220.671 kb on + strandat 220.672 kb on - strandat 220.672 kb on - strandat 220.720 kb on - strand, within EX28DRAFT_3556at 221.005 kb on + strand, within EX28DRAFT_3556at 221.007 kb on - strand, within EX28DRAFT_3556at 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.109 kb on - strandat 221.109 kb on - strandat 221.109 kb on - strandat 221.109 kb on - strandat 221.109 kb on - strandat 221.137 kb on + strandat 221.137 kb on + strandat 221.165 kb on + strandat 221.264 kb on + strand, within EX28DRAFT_3557at 221.264 kb on + strand, within EX28DRAFT_3557at 221.264 kb on + strand, within EX28DRAFT_3557at 221.264 kb on + strand, within EX28DRAFT_3557at 221.265 kb on - strand, within EX28DRAFT_3557at 221.265 kb on - strand, within EX28DRAFT_3557at 221.265 kb on - strand, within EX28DRAFT_3557at 221.265 kb on - strand, within EX28DRAFT_3557at 221.283 kb on + strand, within EX28DRAFT_3557at 221.283 kb on + strand, within EX28DRAFT_3557at 221.284 kb on - strand, within EX28DRAFT_3557at 221.499 kb on + strand, within EX28DRAFT_3557at 221.499 kb on + strand, within EX28DRAFT_3557at 221.499 kb on + strand, within EX28DRAFT_3557at 221.500 kb on - strand, within EX28DRAFT_3557at 221.503 kb on + strand, within EX28DRAFT_3557at 221.588 kb on + strand, within EX28DRAFT_3557at 221.588 kb on + strand, within EX28DRAFT_3557at 221.588 kb on + strand, within EX28DRAFT_3557at 221.588 kb on + strand, within EX28DRAFT_3557at 221.589 kb on - strand, within EX28DRAFT_3557at 221.652 kb on + strandat 221.652 kb on + strandat 221.653 kb on - strandat 221.873 kb on + strand, within EX28DRAFT_3558at 221.873 kb on + strand, within EX28DRAFT_3558at 221.873 kb on + strand, within EX28DRAFT_3558at 221.874 kb on - strand, within EX28DRAFT_3558at 221.958 kb on + strand, within EX28DRAFT_3558at 221.958 kb on + strand, within EX28DRAFT_3558at 221.958 kb on + strand, within EX28DRAFT_3558at 221.959 kb on - strand, within EX28DRAFT_3558at 221.964 kb on + strand, within EX28DRAFT_3558at 222.039 kb on - strand, within EX28DRAFT_3558at 222.039 kb on - strand, within EX28DRAFT_3558at 222.123 kb on + strand, within EX28DRAFT_3558

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
219,842 + +0.2
219,842 + -0.2
219,843 - -1.1
219,955 + EX28DRAFT_3555 0.12 +0.6
220,030 + EX28DRAFT_3555 0.22 -0.3
220,046 + EX28DRAFT_3555 0.24 +0.1
220,101 + EX28DRAFT_3555 0.31 -0.5
220,101 + EX28DRAFT_3555 0.31 -0.1
220,101 + EX28DRAFT_3555 0.31 -0.4
220,102 - EX28DRAFT_3555 0.31 -1.2
220,102 - EX28DRAFT_3555 0.31 -0.8
220,102 - EX28DRAFT_3555 0.31 +0.5
220,102 - EX28DRAFT_3555 0.31 +0.6
220,102 - EX28DRAFT_3555 0.31 -0.2
220,102 - EX28DRAFT_3555 0.31 +0.1
220,205 + EX28DRAFT_3555 0.45 +0.2
220,340 + EX28DRAFT_3555 0.62 -0.8
220,343 + EX28DRAFT_3555 0.62 +0.2
220,344 - EX28DRAFT_3555 0.63 -2.8
220,451 - EX28DRAFT_3555 0.76 +0.2
220,490 + EX28DRAFT_3555 0.81 -0.1
220,641 + +1.0
220,652 + +0.3
220,671 + -1.6
220,672 - -0.5
220,672 - -0.7
220,720 - EX28DRAFT_3556 0.17 -0.6
221,005 + EX28DRAFT_3556 0.74 -1.0
221,007 - EX28DRAFT_3556 0.75 -0.7
221,108 + -0.3
221,108 + -0.3
221,108 + -0.6
221,108 + -0.1
221,108 + -0.1
221,108 + -0.2
221,108 + -0.4
221,108 + +0.8
221,109 - -0.6
221,109 - +0.0
221,109 - +0.2
221,109 - +0.7
221,109 - -0.3
221,137 + +0.3
221,137 + +0.8
221,165 + -0.4
221,264 + EX28DRAFT_3557 0.18 +0.4
221,264 + EX28DRAFT_3557 0.18 +0.1
221,264 + EX28DRAFT_3557 0.18 +0.3
221,264 + EX28DRAFT_3557 0.18 +0.0
221,265 - EX28DRAFT_3557 0.19 +1.0
221,265 - EX28DRAFT_3557 0.19 -0.1
221,265 - EX28DRAFT_3557 0.19 -0.6
221,265 - EX28DRAFT_3557 0.19 +0.0
221,283 + EX28DRAFT_3557 0.22 +0.2
221,283 + EX28DRAFT_3557 0.22 +0.6
221,284 - EX28DRAFT_3557 0.22 +0.5
221,499 + EX28DRAFT_3557 0.62 -0.2
221,499 + EX28DRAFT_3557 0.62 -0.0
221,499 + EX28DRAFT_3557 0.62 -0.4
221,500 - EX28DRAFT_3557 0.62 -0.0
221,503 + EX28DRAFT_3557 0.62 +0.4
221,588 + EX28DRAFT_3557 0.78 +0.2
221,588 + EX28DRAFT_3557 0.78 +0.0
221,588 + EX28DRAFT_3557 0.78 +0.4
221,588 + EX28DRAFT_3557 0.78 -0.6
221,589 - EX28DRAFT_3557 0.78 +0.2
221,652 + -0.6
221,652 + -0.3
221,653 - +0.0
221,873 + EX28DRAFT_3558 0.27 +0.1
221,873 + EX28DRAFT_3558 0.27 -0.5
221,873 + EX28DRAFT_3558 0.27 +0.0
221,874 - EX28DRAFT_3558 0.27 -3.4
221,958 + EX28DRAFT_3558 0.40 +0.1
221,958 + EX28DRAFT_3558 0.40 -0.4
221,958 + EX28DRAFT_3558 0.40 +0.4
221,959 - EX28DRAFT_3558 0.40 -0.4
221,964 + EX28DRAFT_3558 0.41 +0.4
222,039 - EX28DRAFT_3558 0.53 +0.6
222,039 - EX28DRAFT_3558 0.53 +0.1
222,123 + EX28DRAFT_3558 0.66 -0.3

Or see this region's nucleotide sequence