Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2537

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2535 and EX28DRAFT_2536 are separated by 330 nucleotidesEX28DRAFT_2536 and EX28DRAFT_2537 are separated by 308 nucleotidesEX28DRAFT_2537 and EX28DRAFT_2538 are separated by 46 nucleotides EX28DRAFT_2535: EX28DRAFT_2535 - trigger factor, at 2,566,802 to 2,568,100 _2535 EX28DRAFT_2536: EX28DRAFT_2536 - Stress-induced morphogen (activity unknown), at 2,568,431 to 2,568,745 _2536 EX28DRAFT_2537: EX28DRAFT_2537 - Uncharacterized lipoprotein, at 2,569,054 to 2,569,632 _2537 EX28DRAFT_2538: EX28DRAFT_2538 - AmpG-like permease, at 2,569,679 to 2,571,154 _2538 Position (kb) 2569 2570Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2568.152 kb on + strandat 2568.152 kb on + strandat 2568.170 kb on + strandat 2568.171 kb on - strandat 2568.171 kb on - strandat 2568.233 kb on + strandat 2568.236 kb on - strandat 2568.300 kb on - strandat 2568.317 kb on + strandat 2568.318 kb on - strandat 2568.395 kb on + strandat 2568.396 kb on - strandat 2568.509 kb on - strand, within EX28DRAFT_2536at 2568.510 kb on + strand, within EX28DRAFT_2536at 2568.511 kb on - strand, within EX28DRAFT_2536at 2568.514 kb on + strand, within EX28DRAFT_2536at 2568.514 kb on + strand, within EX28DRAFT_2536at 2568.515 kb on - strand, within EX28DRAFT_2536at 2568.515 kb on - strand, within EX28DRAFT_2536at 2568.567 kb on + strand, within EX28DRAFT_2536at 2568.567 kb on + strand, within EX28DRAFT_2536at 2568.567 kb on + strand, within EX28DRAFT_2536at 2568.568 kb on - strand, within EX28DRAFT_2536at 2568.568 kb on - strand, within EX28DRAFT_2536at 2568.568 kb on - strand, within EX28DRAFT_2536at 2568.661 kb on + strand, within EX28DRAFT_2536at 2568.662 kb on - strand, within EX28DRAFT_2536at 2568.669 kb on + strand, within EX28DRAFT_2536at 2568.695 kb on + strand, within EX28DRAFT_2536at 2568.696 kb on - strand, within EX28DRAFT_2536at 2568.717 kb on - strandat 2568.728 kb on + strandat 2568.728 kb on + strandat 2568.728 kb on + strandat 2568.728 kb on + strandat 2568.729 kb on - strandat 2568.729 kb on - strandat 2568.730 kb on + strandat 2568.730 kb on + strandat 2568.731 kb on - strandat 2568.731 kb on - strandat 2568.731 kb on - strandat 2568.740 kb on + strandat 2568.741 kb on - strandat 2568.906 kb on + strandat 2568.961 kb on + strandat 2568.999 kb on + strandat 2569.000 kb on - strandat 2569.023 kb on + strandat 2569.024 kb on - strandat 2569.024 kb on - strandat 2569.025 kb on + strandat 2569.025 kb on + strandat 2569.025 kb on + strandat 2569.031 kb on + strandat 2569.498 kb on + strand, within EX28DRAFT_2537at 2569.499 kb on - strand, within EX28DRAFT_2537at 2569.499 kb on - strand, within EX28DRAFT_2537at 2569.581 kb on + strandat 2569.654 kb on - strandat 2569.654 kb on - strandat 2569.654 kb on - strandat 2569.691 kb on + strandat 2569.691 kb on + strandat 2569.692 kb on - strandat 2569.692 kb on - strandat 2569.692 kb on - strandat 2569.695 kb on + strandat 2569.854 kb on - strand, within EX28DRAFT_2538at 2569.861 kb on + strand, within EX28DRAFT_2538at 2569.892 kb on + strand, within EX28DRAFT_2538at 2569.893 kb on - strand, within EX28DRAFT_2538at 2570.186 kb on + strand, within EX28DRAFT_2538at 2570.207 kb on + strand, within EX28DRAFT_2538at 2570.208 kb on - strand, within EX28DRAFT_2538at 2570.208 kb on - strand, within EX28DRAFT_2538at 2570.208 kb on - strand, within EX28DRAFT_2538at 2570.378 kb on + strand, within EX28DRAFT_2538at 2570.379 kb on - strand, within EX28DRAFT_2538at 2570.379 kb on - strand, within EX28DRAFT_2538at 2570.380 kb on + strand, within EX28DRAFT_2538at 2570.380 kb on + strand, within EX28DRAFT_2538at 2570.381 kb on - strand, within EX28DRAFT_2538at 2570.471 kb on - strand, within EX28DRAFT_2538at 2570.511 kb on - strand, within EX28DRAFT_2538at 2570.624 kb on - strand, within EX28DRAFT_2538at 2570.624 kb on - strand, within EX28DRAFT_2538

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,568,152 + +0.4
2,568,152 + -0.5
2,568,170 + +0.0
2,568,171 - +1.6
2,568,171 - +0.2
2,568,233 + +0.4
2,568,236 - -0.1
2,568,300 - +0.3
2,568,317 + -0.2
2,568,318 - -0.0
2,568,395 + +0.6
2,568,396 - +2.6
2,568,509 - EX28DRAFT_2536 0.25 +0.2
2,568,510 + EX28DRAFT_2536 0.25 +2.9
2,568,511 - EX28DRAFT_2536 0.25 -0.5
2,568,514 + EX28DRAFT_2536 0.26 -2.0
2,568,514 + EX28DRAFT_2536 0.26 -1.3
2,568,515 - EX28DRAFT_2536 0.27 +0.0
2,568,515 - EX28DRAFT_2536 0.27 +0.1
2,568,567 + EX28DRAFT_2536 0.43 +0.7
2,568,567 + EX28DRAFT_2536 0.43 -0.8
2,568,567 + EX28DRAFT_2536 0.43 -0.7
2,568,568 - EX28DRAFT_2536 0.43 -0.0
2,568,568 - EX28DRAFT_2536 0.43 +0.2
2,568,568 - EX28DRAFT_2536 0.43 +0.1
2,568,661 + EX28DRAFT_2536 0.73 -1.3
2,568,662 - EX28DRAFT_2536 0.73 -0.2
2,568,669 + EX28DRAFT_2536 0.76 -0.0
2,568,695 + EX28DRAFT_2536 0.84 +0.1
2,568,696 - EX28DRAFT_2536 0.84 -0.1
2,568,717 - -0.3
2,568,728 + -0.6
2,568,728 + +0.3
2,568,728 + +0.1
2,568,728 + -0.4
2,568,729 - +0.1
2,568,729 - +2.2
2,568,730 + -0.3
2,568,730 + +0.1
2,568,731 - -1.4
2,568,731 - -0.0
2,568,731 - +0.4
2,568,740 + -0.2
2,568,741 - +0.9
2,568,906 + +0.8
2,568,961 + +0.8
2,568,999 + +0.6
2,569,000 - +0.0
2,569,023 + +1.0
2,569,024 - -1.7
2,569,024 - -2.2
2,569,025 + -0.7
2,569,025 + +0.4
2,569,025 + -0.6
2,569,031 + +0.1
2,569,498 + EX28DRAFT_2537 0.77 +0.3
2,569,499 - EX28DRAFT_2537 0.77 +0.1
2,569,499 - EX28DRAFT_2537 0.77 -1.3
2,569,581 + +0.6
2,569,654 - -0.3
2,569,654 - +0.6
2,569,654 - +0.4
2,569,691 + -3.3
2,569,691 + -0.3
2,569,692 - -0.4
2,569,692 - +0.1
2,569,692 - +0.1
2,569,695 + +0.1
2,569,854 - EX28DRAFT_2538 0.12 +0.3
2,569,861 + EX28DRAFT_2538 0.12 -1.2
2,569,892 + EX28DRAFT_2538 0.14 -2.3
2,569,893 - EX28DRAFT_2538 0.14 +0.3
2,570,186 + EX28DRAFT_2538 0.34 +0.1
2,570,207 + EX28DRAFT_2538 0.36 -0.5
2,570,208 - EX28DRAFT_2538 0.36 +0.3
2,570,208 - EX28DRAFT_2538 0.36 +0.6
2,570,208 - EX28DRAFT_2538 0.36 -0.4
2,570,378 + EX28DRAFT_2538 0.47 +0.2
2,570,379 - EX28DRAFT_2538 0.47 -0.1
2,570,379 - EX28DRAFT_2538 0.47 -1.0
2,570,380 + EX28DRAFT_2538 0.47 -0.7
2,570,380 + EX28DRAFT_2538 0.47 +0.5
2,570,381 - EX28DRAFT_2538 0.48 +0.1
2,570,471 - EX28DRAFT_2538 0.54 +0.2
2,570,511 - EX28DRAFT_2538 0.56 -0.3
2,570,624 - EX28DRAFT_2538 0.64 +2.0
2,570,624 - EX28DRAFT_2538 0.64 -0.8

Or see this region's nucleotide sequence