Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2347

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2344 and EX28DRAFT_2345 are separated by 115 nucleotidesEX28DRAFT_2345 and EX28DRAFT_2346 are separated by 43 nucleotidesEX28DRAFT_2346 and EX28DRAFT_2347 are separated by 237 nucleotidesEX28DRAFT_2347 and EX28DRAFT_2348 are separated by 180 nucleotidesEX28DRAFT_2348 and EX28DRAFT_2349 are separated by 60 nucleotides EX28DRAFT_2344: EX28DRAFT_2344 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 2,366,592 to 2,367,209 _2344 EX28DRAFT_2345: EX28DRAFT_2345 - RNA, at 2,367,325 to 2,367,433 _2345 EX28DRAFT_2346: EX28DRAFT_2346 - Transcription elongation factor, at 2,367,477 to 2,367,887 _2346 EX28DRAFT_2347: EX28DRAFT_2347 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 2,368,125 to 2,369,363 _2347 EX28DRAFT_2348: EX28DRAFT_2348 - Universal stress protein UspA and related nucleotide-binding proteins, at 2,369,544 to 2,369,972 _2348 EX28DRAFT_2349: EX28DRAFT_2349 - alkyl hydroperoxide reductase subunit F, at 2,370,033 to 2,371,598 _2349 Position (kb) 2368 2369 2370Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2367.200 kb on - strandat 2367.205 kb on + strandat 2367.205 kb on + strandat 2367.206 kb on - strandat 2367.206 kb on - strandat 2367.206 kb on - strandat 2367.209 kb on + strandat 2367.210 kb on - strandat 2367.329 kb on + strandat 2367.330 kb on - strandat 2367.472 kb on + strandat 2367.494 kb on + strandat 2367.494 kb on + strandat 2367.494 kb on + strandat 2367.494 kb on + strandat 2367.948 kb on + strandat 2367.968 kb on - strandat 2367.968 kb on - strandat 2368.122 kb on + strandat 2368.126 kb on + strandat 2368.127 kb on - strandat 2368.127 kb on - strandat 2368.251 kb on - strand, within EX28DRAFT_2347at 2368.251 kb on - strand, within EX28DRAFT_2347at 2368.251 kb on - strand, within EX28DRAFT_2347at 2368.252 kb on + strand, within EX28DRAFT_2347at 2368.252 kb on + strand, within EX28DRAFT_2347at 2368.253 kb on - strand, within EX28DRAFT_2347at 2368.283 kb on - strand, within EX28DRAFT_2347at 2368.307 kb on + strand, within EX28DRAFT_2347at 2368.391 kb on + strand, within EX28DRAFT_2347at 2368.391 kb on + strand, within EX28DRAFT_2347at 2368.424 kb on + strand, within EX28DRAFT_2347at 2368.424 kb on + strand, within EX28DRAFT_2347at 2368.436 kb on - strand, within EX28DRAFT_2347at 2368.757 kb on + strand, within EX28DRAFT_2347at 2368.758 kb on - strand, within EX28DRAFT_2347at 2368.902 kb on - strand, within EX28DRAFT_2347at 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.352 kb on - strandat 2369.352 kb on - strandat 2369.352 kb on - strandat 2369.352 kb on - strandat 2369.386 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.393 kb on - strandat 2369.393 kb on - strandat 2369.393 kb on - strandat 2369.393 kb on - strandat 2369.393 kb on - strandat 2369.395 kb on - strandat 2369.400 kb on + strandat 2369.400 kb on + strandat 2369.401 kb on - strandat 2369.404 kb on + strandat 2369.446 kb on + strandat 2369.459 kb on + strandat 2369.496 kb on - strandat 2369.525 kb on + strandat 2369.525 kb on + strandat 2369.543 kb on + strandat 2369.547 kb on + strandat 2369.547 kb on + strandat 2369.548 kb on - strandat 2369.821 kb on + strand, within EX28DRAFT_2348at 2369.966 kb on - strandat 2369.966 kb on - strandat 2370.004 kb on + strandat 2370.021 kb on + strandat 2370.031 kb on + strandat 2370.032 kb on - strandat 2370.059 kb on - strandat 2370.151 kb on - strandat 2370.206 kb on + strand, within EX28DRAFT_2349at 2370.206 kb on + strand, within EX28DRAFT_2349at 2370.236 kb on + strand, within EX28DRAFT_2349at 2370.237 kb on - strand, within EX28DRAFT_2349at 2370.237 kb on - strand, within EX28DRAFT_2349

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,367,200 - +0.8
2,367,205 + -0.3
2,367,205 + +0.9
2,367,206 - +0.5
2,367,206 - -0.1
2,367,206 - -0.3
2,367,209 + +0.9
2,367,210 - -0.6
2,367,329 + +3.4
2,367,330 - +0.3
2,367,472 + +0.4
2,367,494 + -1.1
2,367,494 + -1.0
2,367,494 + -0.5
2,367,494 + +0.7
2,367,948 + +0.3
2,367,968 - -0.0
2,367,968 - -0.3
2,368,122 + -2.9
2,368,126 + +0.1
2,368,127 - -0.3
2,368,127 - +1.6
2,368,251 - EX28DRAFT_2347 0.10 -0.7
2,368,251 - EX28DRAFT_2347 0.10 +1.2
2,368,251 - EX28DRAFT_2347 0.10 -0.2
2,368,252 + EX28DRAFT_2347 0.10 -0.5
2,368,252 + EX28DRAFT_2347 0.10 +0.7
2,368,253 - EX28DRAFT_2347 0.10 -0.1
2,368,283 - EX28DRAFT_2347 0.13 +0.2
2,368,307 + EX28DRAFT_2347 0.15 -0.3
2,368,391 + EX28DRAFT_2347 0.21 +0.7
2,368,391 + EX28DRAFT_2347 0.21 -0.6
2,368,424 + EX28DRAFT_2347 0.24 +1.5
2,368,424 + EX28DRAFT_2347 0.24 +0.6
2,368,436 - EX28DRAFT_2347 0.25 +0.6
2,368,757 + EX28DRAFT_2347 0.51 +0.9
2,368,758 - EX28DRAFT_2347 0.51 +0.3
2,368,902 - EX28DRAFT_2347 0.63 -0.5
2,369,351 + +0.5
2,369,351 + -0.3
2,369,351 + -1.1
2,369,351 + +0.5
2,369,351 + -0.5
2,369,351 + -0.3
2,369,351 + +0.0
2,369,352 - +0.2
2,369,352 - +0.3
2,369,352 - -0.4
2,369,352 - +0.2
2,369,386 + +0.1
2,369,392 + -0.1
2,369,392 + -1.0
2,369,392 + -0.6
2,369,392 + -0.4
2,369,392 + -0.4
2,369,392 + +0.1
2,369,392 + -0.0
2,369,393 - -0.4
2,369,393 - +1.0
2,369,393 - +0.2
2,369,393 - +0.0
2,369,393 - -0.8
2,369,395 - -0.0
2,369,400 + -0.0
2,369,400 + +0.1
2,369,401 - +1.3
2,369,404 + +0.0
2,369,446 + +0.2
2,369,459 + -1.1
2,369,496 - -0.3
2,369,525 + +0.8
2,369,525 + -0.1
2,369,543 + +0.3
2,369,547 + +0.1
2,369,547 + +0.1
2,369,548 - -0.8
2,369,821 + EX28DRAFT_2348 0.65 -0.5
2,369,966 - -0.8
2,369,966 - +0.0
2,370,004 + +0.6
2,370,021 + -2.6
2,370,031 + -0.1
2,370,032 - +0.2
2,370,059 - -0.2
2,370,151 - +1.0
2,370,206 + EX28DRAFT_2349 0.11 -0.2
2,370,206 + EX28DRAFT_2349 0.11 -1.9
2,370,236 + EX28DRAFT_2349 0.13 -0.5
2,370,237 - EX28DRAFT_2349 0.13 +0.6
2,370,237 - EX28DRAFT_2349 0.13 -0.0

Or see this region's nucleotide sequence