Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2344 and EX28DRAFT_2345 are separated by 115 nucleotides EX28DRAFT_2345 and EX28DRAFT_2346 are separated by 43 nucleotides EX28DRAFT_2346 and EX28DRAFT_2347 are separated by 237 nucleotides EX28DRAFT_2347 and EX28DRAFT_2348 are separated by 180 nucleotides EX28DRAFT_2348 and EX28DRAFT_2349 are separated by 60 nucleotides
EX28DRAFT_2344: EX28DRAFT_2344 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 2,366,592 to 2,367,209
_2344
EX28DRAFT_2345: EX28DRAFT_2345 - RNA, at 2,367,325 to 2,367,433
_2345
EX28DRAFT_2346: EX28DRAFT_2346 - Transcription elongation factor, at 2,367,477 to 2,367,887
_2346
EX28DRAFT_2347: EX28DRAFT_2347 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 2,368,125 to 2,369,363
_2347
EX28DRAFT_2348: EX28DRAFT_2348 - Universal stress protein UspA and related nucleotide-binding proteins, at 2,369,544 to 2,369,972
_2348
EX28DRAFT_2349: EX28DRAFT_2349 - alkyl hydroperoxide reductase subunit F, at 2,370,033 to 2,371,598
_2349
Position (kb)
2368
2369
2370 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2367.200 kb on - strand at 2367.205 kb on + strand at 2367.205 kb on + strand at 2367.206 kb on - strand at 2367.206 kb on - strand at 2367.206 kb on - strand at 2367.209 kb on + strand at 2367.210 kb on - strand at 2367.329 kb on + strand at 2367.330 kb on - strand at 2367.472 kb on + strand at 2367.494 kb on + strand at 2367.494 kb on + strand at 2367.494 kb on + strand at 2367.494 kb on + strand at 2367.948 kb on + strand at 2367.968 kb on - strand at 2367.968 kb on - strand at 2368.122 kb on + strand at 2368.126 kb on + strand at 2368.127 kb on - strand at 2368.127 kb on - strand at 2368.251 kb on - strand, within EX28DRAFT_2347 at 2368.251 kb on - strand, within EX28DRAFT_2347 at 2368.251 kb on - strand, within EX28DRAFT_2347 at 2368.252 kb on + strand, within EX28DRAFT_2347 at 2368.252 kb on + strand, within EX28DRAFT_2347 at 2368.253 kb on - strand, within EX28DRAFT_2347 at 2368.283 kb on - strand, within EX28DRAFT_2347 at 2368.307 kb on + strand, within EX28DRAFT_2347 at 2368.391 kb on + strand, within EX28DRAFT_2347 at 2368.391 kb on + strand, within EX28DRAFT_2347 at 2368.424 kb on + strand, within EX28DRAFT_2347 at 2368.424 kb on + strand, within EX28DRAFT_2347 at 2368.436 kb on - strand, within EX28DRAFT_2347 at 2368.757 kb on + strand, within EX28DRAFT_2347 at 2368.758 kb on - strand, within EX28DRAFT_2347 at 2368.902 kb on - strand, within EX28DRAFT_2347 at 2369.351 kb on + strand at 2369.351 kb on + strand at 2369.351 kb on + strand at 2369.351 kb on + strand at 2369.351 kb on + strand at 2369.351 kb on + strand at 2369.351 kb on + strand at 2369.352 kb on - strand at 2369.352 kb on - strand at 2369.352 kb on - strand at 2369.352 kb on - strand at 2369.386 kb on + strand at 2369.392 kb on + strand at 2369.392 kb on + strand at 2369.392 kb on + strand at 2369.392 kb on + strand at 2369.392 kb on + strand at 2369.392 kb on + strand at 2369.392 kb on + strand at 2369.393 kb on - strand at 2369.393 kb on - strand at 2369.393 kb on - strand at 2369.393 kb on - strand at 2369.393 kb on - strand at 2369.395 kb on - strand at 2369.400 kb on + strand at 2369.400 kb on + strand at 2369.401 kb on - strand at 2369.404 kb on + strand at 2369.446 kb on + strand at 2369.459 kb on + strand at 2369.496 kb on - strand at 2369.525 kb on + strand at 2369.525 kb on + strand at 2369.543 kb on + strand at 2369.547 kb on + strand at 2369.547 kb on + strand at 2369.548 kb on - strand at 2369.821 kb on + strand, within EX28DRAFT_2348 at 2369.966 kb on - strand at 2369.966 kb on - strand at 2370.004 kb on + strand at 2370.021 kb on + strand at 2370.031 kb on + strand at 2370.032 kb on - strand at 2370.059 kb on - strand at 2370.151 kb on - strand at 2370.206 kb on + strand, within EX28DRAFT_2349 at 2370.206 kb on + strand, within EX28DRAFT_2349 at 2370.236 kb on + strand, within EX28DRAFT_2349 at 2370.237 kb on - strand, within EX28DRAFT_2349 at 2370.237 kb on - strand, within EX28DRAFT_2349
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,367,200 - +0.8 2,367,205 + -0.3 2,367,205 + +0.9 2,367,206 - +0.5 2,367,206 - -0.1 2,367,206 - -0.3 2,367,209 + +0.9 2,367,210 - -0.6 2,367,329 + +3.4 2,367,330 - +0.3 2,367,472 + +0.4 2,367,494 + -1.1 2,367,494 + -1.0 2,367,494 + -0.5 2,367,494 + +0.7 2,367,948 + +0.3 2,367,968 - -0.0 2,367,968 - -0.3 2,368,122 + -2.9 2,368,126 + +0.1 2,368,127 - -0.3 2,368,127 - +1.6 2,368,251 - EX28DRAFT_2347 0.10 -0.7 2,368,251 - EX28DRAFT_2347 0.10 +1.2 2,368,251 - EX28DRAFT_2347 0.10 -0.2 2,368,252 + EX28DRAFT_2347 0.10 -0.5 2,368,252 + EX28DRAFT_2347 0.10 +0.7 2,368,253 - EX28DRAFT_2347 0.10 -0.1 2,368,283 - EX28DRAFT_2347 0.13 +0.2 2,368,307 + EX28DRAFT_2347 0.15 -0.3 2,368,391 + EX28DRAFT_2347 0.21 +0.7 2,368,391 + EX28DRAFT_2347 0.21 -0.6 2,368,424 + EX28DRAFT_2347 0.24 +1.5 2,368,424 + EX28DRAFT_2347 0.24 +0.6 2,368,436 - EX28DRAFT_2347 0.25 +0.6 2,368,757 + EX28DRAFT_2347 0.51 +0.9 2,368,758 - EX28DRAFT_2347 0.51 +0.3 2,368,902 - EX28DRAFT_2347 0.63 -0.5 2,369,351 + +0.5 2,369,351 + -0.3 2,369,351 + -1.1 2,369,351 + +0.5 2,369,351 + -0.5 2,369,351 + -0.3 2,369,351 + +0.0 2,369,352 - +0.2 2,369,352 - +0.3 2,369,352 - -0.4 2,369,352 - +0.2 2,369,386 + +0.1 2,369,392 + -0.1 2,369,392 + -1.0 2,369,392 + -0.6 2,369,392 + -0.4 2,369,392 + -0.4 2,369,392 + +0.1 2,369,392 + -0.0 2,369,393 - -0.4 2,369,393 - +1.0 2,369,393 - +0.2 2,369,393 - +0.0 2,369,393 - -0.8 2,369,395 - -0.0 2,369,400 + -0.0 2,369,400 + +0.1 2,369,401 - +1.3 2,369,404 + +0.0 2,369,446 + +0.2 2,369,459 + -1.1 2,369,496 - -0.3 2,369,525 + +0.8 2,369,525 + -0.1 2,369,543 + +0.3 2,369,547 + +0.1 2,369,547 + +0.1 2,369,548 - -0.8 2,369,821 + EX28DRAFT_2348 0.65 -0.5 2,369,966 - -0.8 2,369,966 - +0.0 2,370,004 + +0.6 2,370,021 + -2.6 2,370,031 + -0.1 2,370,032 - +0.2 2,370,059 - -0.2 2,370,151 - +1.0 2,370,206 + EX28DRAFT_2349 0.11 -0.2 2,370,206 + EX28DRAFT_2349 0.11 -1.9 2,370,236 + EX28DRAFT_2349 0.13 -0.5 2,370,237 - EX28DRAFT_2349 0.13 +0.6 2,370,237 - EX28DRAFT_2349 0.13 -0.0
Or see this region's nucleotide sequence