Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1055

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1053 and EX28DRAFT_1054 are separated by 9 nucleotidesEX28DRAFT_1054 and EX28DRAFT_1055 are separated by 9 nucleotidesEX28DRAFT_1055 and EX28DRAFT_1056 overlap by 17 nucleotidesEX28DRAFT_1056 and EX28DRAFT_1057 are separated by 9 nucleotides EX28DRAFT_1053: EX28DRAFT_1053 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,065,132 to 1,066,064 _1053 EX28DRAFT_1054: EX28DRAFT_1054 - Acetyltransferase (GNAT) family, at 1,066,074 to 1,066,583 _1054 EX28DRAFT_1055: EX28DRAFT_1055 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,066,593 to 1,067,519 _1055 EX28DRAFT_1056: EX28DRAFT_1056 - ABC-type polar amino acid transport system, ATPase component, at 1,067,503 to 1,068,276 _1056 EX28DRAFT_1057: EX28DRAFT_1057 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,068,286 to 1,069,173 _1057 Position (kb) 1066 1067 1068Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1065.802 kb on - strand, within EX28DRAFT_1053at 1066.023 kb on - strandat 1066.150 kb on - strand, within EX28DRAFT_1054at 1066.150 kb on - strand, within EX28DRAFT_1054at 1066.150 kb on - strand, within EX28DRAFT_1054at 1066.170 kb on + strand, within EX28DRAFT_1054at 1066.171 kb on - strand, within EX28DRAFT_1054at 1066.209 kb on + strand, within EX28DRAFT_1054at 1066.209 kb on + strand, within EX28DRAFT_1054at 1066.276 kb on - strand, within EX28DRAFT_1054at 1066.507 kb on - strand, within EX28DRAFT_1054at 1066.572 kb on - strandat 1066.935 kb on + strand, within EX28DRAFT_1055at 1067.073 kb on + strand, within EX28DRAFT_1055at 1067.076 kb on - strand, within EX28DRAFT_1055at 1067.259 kb on + strand, within EX28DRAFT_1055at 1067.259 kb on + strand, within EX28DRAFT_1055at 1067.260 kb on - strand, within EX28DRAFT_1055at 1067.260 kb on - strand, within EX28DRAFT_1055at 1067.260 kb on - strand, within EX28DRAFT_1055at 1067.286 kb on + strand, within EX28DRAFT_1055at 1067.286 kb on + strand, within EX28DRAFT_1055at 1067.286 kb on + strand, within EX28DRAFT_1055at 1067.287 kb on - strand, within EX28DRAFT_1055at 1067.287 kb on - strand, within EX28DRAFT_1055at 1067.287 kb on - strand, within EX28DRAFT_1055at 1067.287 kb on - strand, within EX28DRAFT_1055at 1067.304 kb on + strand, within EX28DRAFT_1055at 1067.304 kb on + strand, within EX28DRAFT_1055at 1067.304 kb on + strand, within EX28DRAFT_1055at 1067.305 kb on - strand, within EX28DRAFT_1055at 1067.391 kb on + strand, within EX28DRAFT_1055at 1067.392 kb on - strand, within EX28DRAFT_1055at 1067.527 kb on - strandat 1067.527 kb on - strandat 1067.527 kb on - strandat 1067.527 kb on - strandat 1067.695 kb on - strand, within EX28DRAFT_1056at 1067.722 kb on + strand, within EX28DRAFT_1056at 1068.224 kb on + strandat 1068.224 kb on + strandat 1068.281 kb on + strandat 1068.292 kb on + strandat 1068.292 kb on + strandat 1068.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,065,802 - EX28DRAFT_1053 0.72 -1.6
1,066,023 - +0.6
1,066,150 - EX28DRAFT_1054 0.15 -0.4
1,066,150 - EX28DRAFT_1054 0.15 -0.0
1,066,150 - EX28DRAFT_1054 0.15 +3.2
1,066,170 + EX28DRAFT_1054 0.19 -0.7
1,066,171 - EX28DRAFT_1054 0.19 +0.5
1,066,209 + EX28DRAFT_1054 0.26 +1.3
1,066,209 + EX28DRAFT_1054 0.26 +0.5
1,066,276 - EX28DRAFT_1054 0.40 -0.9
1,066,507 - EX28DRAFT_1054 0.85 +0.1
1,066,572 - -2.1
1,066,935 + EX28DRAFT_1055 0.37 -0.3
1,067,073 + EX28DRAFT_1055 0.52 +0.9
1,067,076 - EX28DRAFT_1055 0.52 -0.5
1,067,259 + EX28DRAFT_1055 0.72 +1.0
1,067,259 + EX28DRAFT_1055 0.72 +1.8
1,067,260 - EX28DRAFT_1055 0.72 -0.7
1,067,260 - EX28DRAFT_1055 0.72 +0.5
1,067,260 - EX28DRAFT_1055 0.72 +0.5
1,067,286 + EX28DRAFT_1055 0.75 -0.3
1,067,286 + EX28DRAFT_1055 0.75 +0.4
1,067,286 + EX28DRAFT_1055 0.75 -1.0
1,067,287 - EX28DRAFT_1055 0.75 +1.0
1,067,287 - EX28DRAFT_1055 0.75 +0.7
1,067,287 - EX28DRAFT_1055 0.75 +0.2
1,067,287 - EX28DRAFT_1055 0.75 +0.1
1,067,304 + EX28DRAFT_1055 0.77 -0.9
1,067,304 + EX28DRAFT_1055 0.77 +0.3
1,067,304 + EX28DRAFT_1055 0.77 -0.3
1,067,305 - EX28DRAFT_1055 0.77 +0.4
1,067,391 + EX28DRAFT_1055 0.86 -0.4
1,067,392 - EX28DRAFT_1055 0.86 +1.0
1,067,527 - -0.2
1,067,527 - +0.4
1,067,527 - +0.9
1,067,527 - -0.6
1,067,695 - EX28DRAFT_1056 0.25 -0.5
1,067,722 + EX28DRAFT_1056 0.28 -1.3
1,068,224 + +0.5
1,068,224 + +0.0
1,068,281 + +0.2
1,068,292 + -0.9
1,068,292 + +0.9
1,068,293 - +0.5

Or see this region's nucleotide sequence