Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1053 and EX28DRAFT_1054 are separated by 9 nucleotides EX28DRAFT_1054 and EX28DRAFT_1055 are separated by 9 nucleotides EX28DRAFT_1055 and EX28DRAFT_1056 overlap by 17 nucleotides EX28DRAFT_1056 and EX28DRAFT_1057 are separated by 9 nucleotides
EX28DRAFT_1053: EX28DRAFT_1053 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,065,132 to 1,066,064
_1053
EX28DRAFT_1054: EX28DRAFT_1054 - Acetyltransferase (GNAT) family, at 1,066,074 to 1,066,583
_1054
EX28DRAFT_1055: EX28DRAFT_1055 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,066,593 to 1,067,519
_1055
EX28DRAFT_1056: EX28DRAFT_1056 - ABC-type polar amino acid transport system, ATPase component, at 1,067,503 to 1,068,276
_1056
EX28DRAFT_1057: EX28DRAFT_1057 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,068,286 to 1,069,173
_1057
Position (kb)
1066
1067
1068 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1065.802 kb on - strand, within EX28DRAFT_1053 at 1066.023 kb on - strand at 1066.150 kb on - strand, within EX28DRAFT_1054 at 1066.150 kb on - strand, within EX28DRAFT_1054 at 1066.150 kb on - strand, within EX28DRAFT_1054 at 1066.170 kb on + strand, within EX28DRAFT_1054 at 1066.171 kb on - strand, within EX28DRAFT_1054 at 1066.209 kb on + strand, within EX28DRAFT_1054 at 1066.209 kb on + strand, within EX28DRAFT_1054 at 1066.276 kb on - strand, within EX28DRAFT_1054 at 1066.507 kb on - strand, within EX28DRAFT_1054 at 1066.572 kb on - strand at 1066.935 kb on + strand, within EX28DRAFT_1055 at 1067.073 kb on + strand, within EX28DRAFT_1055 at 1067.076 kb on - strand, within EX28DRAFT_1055 at 1067.259 kb on + strand, within EX28DRAFT_1055 at 1067.259 kb on + strand, within EX28DRAFT_1055 at 1067.260 kb on - strand, within EX28DRAFT_1055 at 1067.260 kb on - strand, within EX28DRAFT_1055 at 1067.260 kb on - strand, within EX28DRAFT_1055 at 1067.286 kb on + strand, within EX28DRAFT_1055 at 1067.286 kb on + strand, within EX28DRAFT_1055 at 1067.286 kb on + strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.304 kb on + strand, within EX28DRAFT_1055 at 1067.304 kb on + strand, within EX28DRAFT_1055 at 1067.304 kb on + strand, within EX28DRAFT_1055 at 1067.305 kb on - strand, within EX28DRAFT_1055 at 1067.391 kb on + strand, within EX28DRAFT_1055 at 1067.392 kb on - strand, within EX28DRAFT_1055 at 1067.527 kb on - strand at 1067.527 kb on - strand at 1067.527 kb on - strand at 1067.527 kb on - strand at 1067.695 kb on - strand, within EX28DRAFT_1056 at 1067.722 kb on + strand, within EX28DRAFT_1056 at 1068.224 kb on + strand at 1068.224 kb on + strand at 1068.281 kb on + strand at 1068.292 kb on + strand at 1068.292 kb on + strand at 1068.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,065,802 - EX28DRAFT_1053 0.72 -1.6 1,066,023 - +0.6 1,066,150 - EX28DRAFT_1054 0.15 -0.4 1,066,150 - EX28DRAFT_1054 0.15 -0.0 1,066,150 - EX28DRAFT_1054 0.15 +3.2 1,066,170 + EX28DRAFT_1054 0.19 -0.7 1,066,171 - EX28DRAFT_1054 0.19 +0.5 1,066,209 + EX28DRAFT_1054 0.26 +1.3 1,066,209 + EX28DRAFT_1054 0.26 +0.5 1,066,276 - EX28DRAFT_1054 0.40 -0.9 1,066,507 - EX28DRAFT_1054 0.85 +0.1 1,066,572 - -2.1 1,066,935 + EX28DRAFT_1055 0.37 -0.3 1,067,073 + EX28DRAFT_1055 0.52 +0.9 1,067,076 - EX28DRAFT_1055 0.52 -0.5 1,067,259 + EX28DRAFT_1055 0.72 +1.0 1,067,259 + EX28DRAFT_1055 0.72 +1.8 1,067,260 - EX28DRAFT_1055 0.72 -0.7 1,067,260 - EX28DRAFT_1055 0.72 +0.5 1,067,260 - EX28DRAFT_1055 0.72 +0.5 1,067,286 + EX28DRAFT_1055 0.75 -0.3 1,067,286 + EX28DRAFT_1055 0.75 +0.4 1,067,286 + EX28DRAFT_1055 0.75 -1.0 1,067,287 - EX28DRAFT_1055 0.75 +1.0 1,067,287 - EX28DRAFT_1055 0.75 +0.7 1,067,287 - EX28DRAFT_1055 0.75 +0.2 1,067,287 - EX28DRAFT_1055 0.75 +0.1 1,067,304 + EX28DRAFT_1055 0.77 -0.9 1,067,304 + EX28DRAFT_1055 0.77 +0.3 1,067,304 + EX28DRAFT_1055 0.77 -0.3 1,067,305 - EX28DRAFT_1055 0.77 +0.4 1,067,391 + EX28DRAFT_1055 0.86 -0.4 1,067,392 - EX28DRAFT_1055 0.86 +1.0 1,067,527 - -0.2 1,067,527 - +0.4 1,067,527 - +0.9 1,067,527 - -0.6 1,067,695 - EX28DRAFT_1056 0.25 -0.5 1,067,722 + EX28DRAFT_1056 0.28 -1.3 1,068,224 + +0.5 1,068,224 + +0.0 1,068,281 + +0.2 1,068,292 + -0.9 1,068,292 + +0.9 1,068,293 - +0.5
Or see this region's nucleotide sequence