Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0067

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0066 and EX28DRAFT_0067 are separated by 40 nucleotidesEX28DRAFT_0067 and EX28DRAFT_0068 are separated by 313 nucleotidesEX28DRAFT_0068 and EX28DRAFT_0069 are separated by 50 nucleotides EX28DRAFT_0066: EX28DRAFT_0066 - rRNA methylases, at 7,739 to 8,869 _0066 EX28DRAFT_0067: EX28DRAFT_0067 - Uracil-DNA glycosylase (EC 3.2.2.-), at 8,910 to 9,599 _0067 EX28DRAFT_0068: EX28DRAFT_0068 - autonomous glycyl radical cofactor GrcA, at 9,913 to 10,296 _0068 EX28DRAFT_0069: EX28DRAFT_0069 - Superfamily II DNA and RNA helicases, at 10,347 to 11,675 _0069 Position (kb) 8 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 8.210 kb on - strand, within EX28DRAFT_0066at 8.321 kb on - strand, within EX28DRAFT_0066at 8.555 kb on - strand, within EX28DRAFT_0066at 8.580 kb on + strand, within EX28DRAFT_0066at 8.629 kb on + strand, within EX28DRAFT_0066at 8.715 kb on + strand, within EX28DRAFT_0066at 8.716 kb on - strand, within EX28DRAFT_0066at 8.867 kb on + strandat 8.867 kb on + strandat 8.868 kb on - strandat 8.876 kb on + strandat 8.912 kb on - strandat 8.928 kb on + strandat 8.931 kb on + strandat 8.931 kb on + strandat 9.120 kb on + strand, within EX28DRAFT_0067at 9.146 kb on + strand, within EX28DRAFT_0067at 9.230 kb on + strand, within EX28DRAFT_0067at 9.321 kb on - strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.539 kb on + strandat 9.540 kb on - strandat 9.544 kb on + strandat 9.545 kb on - strandat 9.631 kb on - strandat 9.635 kb on + strandat 9.830 kb on + strandat 9.830 kb on + strandat 9.831 kb on - strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.833 kb on - strandat 9.833 kb on - strandat 9.833 kb on - strandat 9.834 kb on + strandat 9.834 kb on + strandat 9.834 kb on + strandat 9.835 kb on - strandat 9.836 kb on + strandat 9.889 kb on + strandat 9.889 kb on + strandat 9.890 kb on - strandat 9.890 kb on - strandat 9.895 kb on - strandat 9.918 kb on + strandat 9.919 kb on - strandat 10.072 kb on + strand, within EX28DRAFT_0068at 10.137 kb on - strand, within EX28DRAFT_0068at 10.275 kb on + strandat 10.403 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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8,210 - EX28DRAFT_0066 0.42 +0.5
8,321 - EX28DRAFT_0066 0.51 +1.7
8,555 - EX28DRAFT_0066 0.72 -0.1
8,580 + EX28DRAFT_0066 0.74 +0.4
8,629 + EX28DRAFT_0066 0.79 -0.2
8,715 + EX28DRAFT_0066 0.86 +0.0
8,716 - EX28DRAFT_0066 0.86 -1.3
8,867 + -0.3
8,867 + +0.2
8,868 - -0.6
8,876 + +0.3
8,912 - -1.7
8,928 + +0.5
8,931 + -0.4
8,931 + +0.2
9,120 + EX28DRAFT_0067 0.30 -1.7
9,146 + EX28DRAFT_0067 0.34 +0.6
9,230 + EX28DRAFT_0067 0.46 +0.6
9,321 - EX28DRAFT_0067 0.60 +0.1
9,322 + EX28DRAFT_0067 0.60 -1.1
9,322 + EX28DRAFT_0067 0.60 +1.1
9,322 + EX28DRAFT_0067 0.60 -0.1
9,322 + EX28DRAFT_0067 0.60 +0.4
9,323 - EX28DRAFT_0067 0.60 +0.4
9,323 - EX28DRAFT_0067 0.60 +0.3
9,323 - EX28DRAFT_0067 0.60 -0.1
9,323 - EX28DRAFT_0067 0.60 +0.0
9,323 - EX28DRAFT_0067 0.60 -1.0
9,539 + +0.5
9,540 - -3.4
9,544 + -0.3
9,545 - -0.9
9,631 - +1.5
9,635 + -0.8
9,830 + -0.6
9,830 + +0.3
9,831 - -1.0
9,832 + +0.6
9,832 + +0.1
9,832 + +0.3
9,832 + +0.0
9,832 + +0.1
9,832 + +3.4
9,832 + -0.6
9,832 + -0.3
9,833 - +0.4
9,833 - +0.2
9,833 - -0.5
9,834 + -0.2
9,834 + -0.4
9,834 + +0.0
9,835 - +0.8
9,836 + -3.2
9,889 + -0.8
9,889 + -0.7
9,890 - -1.8
9,890 - +0.3
9,895 - -0.3
9,918 + +1.0
9,919 - -1.6
10,072 + EX28DRAFT_0068 0.41 -1.9
10,137 - EX28DRAFT_0068 0.58 -0.7
10,275 + +1.7
10,403 + -1.1

Or see this region's nucleotide sequence