Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30860 and ABIE40_RS30865 are separated by 772 nucleotides ABIE40_RS30865 and ABIE40_RS30870 overlap by 37 nucleotides ABIE40_RS30870 and ABIE40_RS30875 are separated by 33 nucleotides
ABIE40_RS30860: ABIE40_RS30860 - SDR family oxidoreductase, at 865,919 to 866,788
_RS30860
ABIE40_RS30865: ABIE40_RS30865 - CheR family methyltransferase, at 867,561 to 867,689
_RS30865
ABIE40_RS30870: ABIE40_RS30870 - hypothetical protein, at 867,653 to 868,021
_RS30870
ABIE40_RS30875: ABIE40_RS30875 - PAS domain-containing protein, at 868,055 to 870,301
_RS30875
Position (kb) 867
868 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 866.563 kb on - strand, within ABIE40_RS30860 at 866.618 kb on + strand, within ABIE40_RS30860 at 866.618 kb on + strand, within ABIE40_RS30860 at 866.619 kb on - strand, within ABIE40_RS30860 at 866.679 kb on + strand, within ABIE40_RS30860 at 866.754 kb on + strand at 866.774 kb on + strand at 866.774 kb on + strand at 866.775 kb on - strand at 866.775 kb on - strand at 866.775 kb on - strand at 866.775 kb on - strand at 866.802 kb on - strand at 866.802 kb on - strand at 866.893 kb on - strand at 866.893 kb on - strand at 866.991 kb on + strand at 866.992 kb on - strand at 866.992 kb on - strand at 867.064 kb on + strand at 867.065 kb on - strand at 867.178 kb on + strand at 867.267 kb on + strand at 867.267 kb on + strand at 867.364 kb on - strand at 867.391 kb on - strand at 867.525 kb on + strand at 867.526 kb on - strand at 867.574 kb on + strand, within ABIE40_RS30865 at 867.574 kb on + strand, within ABIE40_RS30865 at 867.600 kb on - strand, within ABIE40_RS30865 at 867.699 kb on - strand, within ABIE40_RS30870 at 867.797 kb on + strand, within ABIE40_RS30870 at 867.797 kb on + strand, within ABIE40_RS30870 at 867.797 kb on + strand, within ABIE40_RS30870 at 867.797 kb on + strand, within ABIE40_RS30870 at 867.797 kb on + strand, within ABIE40_RS30870 at 867.797 kb on + strand, within ABIE40_RS30870 at 867.797 kb on + strand, within ABIE40_RS30870 at 867.797 kb on + strand, within ABIE40_RS30870 at 867.798 kb on - strand, within ABIE40_RS30870 at 867.798 kb on - strand, within ABIE40_RS30870 at 867.979 kb on + strand, within ABIE40_RS30870 at 867.979 kb on + strand, within ABIE40_RS30870 at 868.148 kb on - strand at 868.314 kb on + strand, within ABIE40_RS30875 at 868.314 kb on + strand, within ABIE40_RS30875 at 868.315 kb on - strand, within ABIE40_RS30875 at 868.315 kb on - strand, within ABIE40_RS30875 at 868.316 kb on + strand, within ABIE40_RS30875 at 868.316 kb on + strand, within ABIE40_RS30875 at 868.317 kb on - strand, within ABIE40_RS30875 at 868.328 kb on - strand, within ABIE40_RS30875 at 868.431 kb on - strand, within ABIE40_RS30875 at 868.654 kb on + strand, within ABIE40_RS30875 at 868.669 kb on + strand, within ABIE40_RS30875
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 866,563 - ABIE40_RS30860 0.74 +1.1 866,618 + ABIE40_RS30860 0.80 -1.2 866,618 + ABIE40_RS30860 0.80 -2.0 866,619 - ABIE40_RS30860 0.80 -0.0 866,679 + ABIE40_RS30860 0.87 -0.1 866,754 + +0.2 866,774 + -2.7 866,774 + +0.5 866,775 - -1.3 866,775 - +0.8 866,775 - +0.0 866,775 - +0.1 866,802 - +0.3 866,802 - +0.9 866,893 - -3.2 866,893 - -2.0 866,991 + +0.4 866,992 - +0.1 866,992 - -0.1 867,064 + +0.4 867,065 - -0.7 867,178 + -1.4 867,267 + -0.1 867,267 + +0.5 867,364 - -0.1 867,391 - -0.7 867,525 + -1.0 867,526 - +0.9 867,574 + ABIE40_RS30865 0.10 +1.9 867,574 + ABIE40_RS30865 0.10 -1.4 867,600 - ABIE40_RS30865 0.30 -2.6 867,699 - ABIE40_RS30870 0.12 -0.7 867,797 + ABIE40_RS30870 0.39 -0.7 867,797 + ABIE40_RS30870 0.39 -0.1 867,797 + ABIE40_RS30870 0.39 -0.3 867,797 + ABIE40_RS30870 0.39 -0.5 867,797 + ABIE40_RS30870 0.39 +1.8 867,797 + ABIE40_RS30870 0.39 +0.3 867,797 + ABIE40_RS30870 0.39 -0.4 867,797 + ABIE40_RS30870 0.39 +0.2 867,798 - ABIE40_RS30870 0.39 +0.2 867,798 - ABIE40_RS30870 0.39 -0.4 867,979 + ABIE40_RS30870 0.88 -1.1 867,979 + ABIE40_RS30870 0.88 -1.0 868,148 - -1.8 868,314 + ABIE40_RS30875 0.12 +0.5 868,314 + ABIE40_RS30875 0.12 +0.9 868,315 - ABIE40_RS30875 0.12 -0.0 868,315 - ABIE40_RS30875 0.12 +0.6 868,316 + ABIE40_RS30875 0.12 -0.5 868,316 + ABIE40_RS30875 0.12 -0.7 868,317 - ABIE40_RS30875 0.12 -1.2 868,328 - ABIE40_RS30875 0.12 +0.7 868,431 - ABIE40_RS30875 0.17 +0.8 868,654 + ABIE40_RS30875 0.27 +0.3 868,669 + ABIE40_RS30875 0.27 -1.6
Or see this region's nucleotide sequence