Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22045 and ABIE40_RS22050 overlap by 4 nucleotides ABIE40_RS22050 and ABIE40_RS22055 are separated by 0 nucleotides ABIE40_RS22055 and ABIE40_RS22060 are separated by 1 nucleotides
ABIE40_RS22045: ABIE40_RS22045 - type I secretion system permease/ATPase, at 544,550 to 546,745
_RS22045
ABIE40_RS22050: ABIE40_RS22050 - HlyD family type I secretion periplasmic adaptor subunit, at 546,742 to 548,034
_RS22050
ABIE40_RS22055: ABIE40_RS22055 - ribbon-helix-helix domain-containing protein, at 548,035 to 548,694
_RS22055
ABIE40_RS22060: ABIE40_RS22060 - phosphoglycerate mutase family protein, at 548,696 to 549,442
_RS22060
Position (kb) 546
547
548
549 Strain fitness (log2 ratio) -2
-1
0
1
2 at 545.783 kb on + strand, within ABIE40_RS22045 at 545.783 kb on + strand, within ABIE40_RS22045 at 545.783 kb on + strand, within ABIE40_RS22045 at 545.783 kb on + strand, within ABIE40_RS22045 at 545.783 kb on + strand, within ABIE40_RS22045 at 545.784 kb on - strand, within ABIE40_RS22045 at 545.784 kb on - strand, within ABIE40_RS22045 at 545.784 kb on - strand, within ABIE40_RS22045 at 545.784 kb on - strand, within ABIE40_RS22045 at 545.784 kb on - strand, within ABIE40_RS22045 at 546.027 kb on - strand, within ABIE40_RS22045 at 546.098 kb on - strand, within ABIE40_RS22045 at 546.204 kb on - strand, within ABIE40_RS22045 at 546.997 kb on - strand, within ABIE40_RS22050 at 547.090 kb on + strand, within ABIE40_RS22050 at 547.186 kb on + strand, within ABIE40_RS22050 at 547.186 kb on + strand, within ABIE40_RS22050 at 547.187 kb on - strand, within ABIE40_RS22050 at 547.303 kb on + strand, within ABIE40_RS22050 at 547.303 kb on + strand, within ABIE40_RS22050 at 547.377 kb on + strand, within ABIE40_RS22050 at 547.406 kb on - strand, within ABIE40_RS22050 at 547.406 kb on - strand, within ABIE40_RS22050 at 547.406 kb on - strand, within ABIE40_RS22050 at 547.611 kb on + strand, within ABIE40_RS22050 at 547.612 kb on - strand, within ABIE40_RS22050 at 547.639 kb on + strand, within ABIE40_RS22050 at 547.639 kb on + strand, within ABIE40_RS22050 at 547.639 kb on + strand, within ABIE40_RS22050 at 547.687 kb on - strand, within ABIE40_RS22050 at 547.771 kb on + strand, within ABIE40_RS22050 at 547.816 kb on - strand, within ABIE40_RS22050 at 547.816 kb on - strand, within ABIE40_RS22050 at 547.816 kb on - strand, within ABIE40_RS22050 at 547.858 kb on + strand, within ABIE40_RS22050 at 547.858 kb on + strand, within ABIE40_RS22050 at 547.858 kb on + strand, within ABIE40_RS22050 at 547.858 kb on + strand, within ABIE40_RS22050 at 547.859 kb on - strand, within ABIE40_RS22050 at 547.862 kb on - strand, within ABIE40_RS22050 at 547.916 kb on - strand at 547.981 kb on + strand at 548.032 kb on + strand at 548.032 kb on + strand at 548.032 kb on + strand at 548.033 kb on - strand at 548.033 kb on - strand at 548.033 kb on - strand at 548.104 kb on - strand, within ABIE40_RS22055 at 548.188 kb on + strand, within ABIE40_RS22055 at 548.188 kb on + strand, within ABIE40_RS22055 at 548.188 kb on + strand, within ABIE40_RS22055 at 548.188 kb on + strand, within ABIE40_RS22055 at 548.188 kb on + strand, within ABIE40_RS22055 at 548.189 kb on - strand, within ABIE40_RS22055 at 548.189 kb on - strand, within ABIE40_RS22055 at 548.189 kb on - strand, within ABIE40_RS22055 at 548.189 kb on - strand, within ABIE40_RS22055 at 548.189 kb on - strand, within ABIE40_RS22055 at 548.337 kb on + strand, within ABIE40_RS22055 at 548.677 kb on + strand at 548.677 kb on + strand at 548.677 kb on + strand at 548.677 kb on + strand at 548.678 kb on - strand at 548.678 kb on - strand at 548.678 kb on - strand at 548.679 kb on + strand at 548.680 kb on - strand at 548.701 kb on + strand at 548.701 kb on + strand at 548.701 kb on + strand at 548.701 kb on + strand at 548.702 kb on - strand at 548.805 kb on + strand, within ABIE40_RS22060 at 548.805 kb on + strand, within ABIE40_RS22060 at 548.806 kb on - strand, within ABIE40_RS22060 at 548.948 kb on - strand, within ABIE40_RS22060
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 545,783 + ABIE40_RS22045 0.56 -0.1 545,783 + ABIE40_RS22045 0.56 -0.2 545,783 + ABIE40_RS22045 0.56 +1.3 545,783 + ABIE40_RS22045 0.56 +2.1 545,783 + ABIE40_RS22045 0.56 -0.1 545,784 - ABIE40_RS22045 0.56 -0.0 545,784 - ABIE40_RS22045 0.56 +0.5 545,784 - ABIE40_RS22045 0.56 +1.4 545,784 - ABIE40_RS22045 0.56 -1.4 545,784 - ABIE40_RS22045 0.56 -0.2 546,027 - ABIE40_RS22045 0.67 -0.3 546,098 - ABIE40_RS22045 0.70 -1.1 546,204 - ABIE40_RS22045 0.75 -1.1 546,997 - ABIE40_RS22050 0.20 -1.5 547,090 + ABIE40_RS22050 0.27 -0.8 547,186 + ABIE40_RS22050 0.34 -0.7 547,186 + ABIE40_RS22050 0.34 -0.8 547,187 - ABIE40_RS22050 0.34 +0.4 547,303 + ABIE40_RS22050 0.43 +0.2 547,303 + ABIE40_RS22050 0.43 -2.5 547,377 + ABIE40_RS22050 0.49 +0.9 547,406 - ABIE40_RS22050 0.51 -0.8 547,406 - ABIE40_RS22050 0.51 +0.3 547,406 - ABIE40_RS22050 0.51 +0.2 547,611 + ABIE40_RS22050 0.67 -0.4 547,612 - ABIE40_RS22050 0.67 -0.5 547,639 + ABIE40_RS22050 0.69 -1.1 547,639 + ABIE40_RS22050 0.69 +0.2 547,639 + ABIE40_RS22050 0.69 -2.5 547,687 - ABIE40_RS22050 0.73 -0.8 547,771 + ABIE40_RS22050 0.80 +1.7 547,816 - ABIE40_RS22050 0.83 +1.3 547,816 - ABIE40_RS22050 0.83 -0.3 547,816 - ABIE40_RS22050 0.83 +1.8 547,858 + ABIE40_RS22050 0.86 +0.3 547,858 + ABIE40_RS22050 0.86 -1.9 547,858 + ABIE40_RS22050 0.86 -0.4 547,858 + ABIE40_RS22050 0.86 -0.1 547,859 - ABIE40_RS22050 0.86 -0.2 547,862 - ABIE40_RS22050 0.87 -0.5 547,916 - -0.3 547,981 + -0.0 548,032 + -1.9 548,032 + -0.4 548,032 + +0.4 548,033 - +0.1 548,033 - +0.5 548,033 - +2.4 548,104 - ABIE40_RS22055 0.10 -1.8 548,188 + ABIE40_RS22055 0.23 -1.8 548,188 + ABIE40_RS22055 0.23 +0.8 548,188 + ABIE40_RS22055 0.23 -0.8 548,188 + ABIE40_RS22055 0.23 +0.3 548,188 + ABIE40_RS22055 0.23 +0.2 548,189 - ABIE40_RS22055 0.23 -0.4 548,189 - ABIE40_RS22055 0.23 -0.5 548,189 - ABIE40_RS22055 0.23 +0.4 548,189 - ABIE40_RS22055 0.23 +0.2 548,189 - ABIE40_RS22055 0.23 -1.6 548,337 + ABIE40_RS22055 0.46 -1.3 548,677 + +0.5 548,677 + -0.0 548,677 + +0.5 548,677 + +1.4 548,678 - +0.1 548,678 - -0.1 548,678 - -0.5 548,679 + +0.5 548,680 - -1.0 548,701 + +0.7 548,701 + +1.0 548,701 + +0.3 548,701 + -0.9 548,702 - -1.2 548,805 + ABIE40_RS22060 0.15 -0.1 548,805 + ABIE40_RS22060 0.15 +1.2 548,806 - ABIE40_RS22060 0.15 +1.2 548,948 - ABIE40_RS22060 0.34 -0.6
Or see this region's nucleotide sequence