Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20795

Experiment: Carnitine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS20780 and ABIE40_RS20785 are separated by 78 nucleotidesABIE40_RS20785 and ABIE40_RS20790 overlap by 4 nucleotidesABIE40_RS20790 and ABIE40_RS20795 are separated by 11 nucleotidesABIE40_RS20795 and ABIE40_RS20800 are separated by 77 nucleotides ABIE40_RS20780: ABIE40_RS20780 - carboxyl transferase domain-containing protein, at 265,343 to 266,950 _RS20780 ABIE40_RS20785: ABIE40_RS20785 - type II toxin-antitoxin system HicA family toxin, at 267,029 to 267,283 _RS20785 ABIE40_RS20790: ABIE40_RS20790 - type II toxin-antitoxin system HicB family antitoxin, at 267,280 to 267,639 _RS20790 ABIE40_RS20795: ABIE40_RS20795 - isovaleryl-CoA dehydrogenase, at 267,651 to 268,814 _RS20795 ABIE40_RS20800: ABIE40_RS20800 - indolepyruvate ferredoxin oxidoreductase family protein, at 268,892 to 272,362 _RS20800 Position (kb) 267 268 269Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 266.706 kb on + strand, within ABIE40_RS20780at 266.706 kb on + strand, within ABIE40_RS20780at 266.706 kb on + strand, within ABIE40_RS20780at 266.706 kb on + strand, within ABIE40_RS20780at 266.706 kb on + strand, within ABIE40_RS20780at 266.706 kb on + strand, within ABIE40_RS20780at 266.706 kb on + strand, within ABIE40_RS20780at 266.706 kb on + strand, within ABIE40_RS20780at 266.706 kb on + strand, within ABIE40_RS20780at 266.706 kb on + strand, within ABIE40_RS20780at 266.706 kb on + strand, within ABIE40_RS20780at 266.706 kb on + strand, within ABIE40_RS20780at 266.707 kb on - strand, within ABIE40_RS20780at 266.707 kb on - strand, within ABIE40_RS20780at 266.707 kb on - strand, within ABIE40_RS20780at 266.707 kb on - strand, within ABIE40_RS20780at 266.707 kb on - strand, within ABIE40_RS20780at 266.807 kb on - strandat 266.974 kb on - strandat 267.049 kb on + strandat 267.049 kb on + strandat 267.049 kb on + strandat 267.050 kb on - strandat 267.230 kb on + strand, within ABIE40_RS20785at 267.230 kb on + strand, within ABIE40_RS20785at 267.230 kb on + strand, within ABIE40_RS20785at 267.237 kb on + strand, within ABIE40_RS20785at 267.237 kb on + strand, within ABIE40_RS20785at 267.237 kb on + strand, within ABIE40_RS20785at 267.237 kb on + strand, within ABIE40_RS20785at 267.238 kb on - strand, within ABIE40_RS20785at 267.238 kb on - strand, within ABIE40_RS20785at 267.238 kb on - strand, within ABIE40_RS20785at 267.289 kb on + strandat 267.289 kb on + strandat 267.290 kb on - strandat 267.298 kb on + strandat 267.300 kb on + strandat 267.300 kb on + strandat 267.301 kb on - strandat 267.433 kb on + strand, within ABIE40_RS20790at 267.434 kb on - strand, within ABIE40_RS20790at 267.501 kb on + strand, within ABIE40_RS20790at 267.501 kb on + strand, within ABIE40_RS20790at 267.501 kb on + strand, within ABIE40_RS20790at 267.501 kb on + strand, within ABIE40_RS20790at 267.502 kb on - strand, within ABIE40_RS20790at 267.502 kb on - strand, within ABIE40_RS20790at 267.502 kb on - strand, within ABIE40_RS20790at 267.724 kb on + strandat 267.724 kb on + strandat 267.725 kb on - strandat 267.725 kb on - strandat 267.835 kb on + strand, within ABIE40_RS20795at 267.836 kb on - strand, within ABIE40_RS20795at 267.836 kb on - strand, within ABIE40_RS20795at 267.901 kb on + strand, within ABIE40_RS20795at 267.901 kb on + strand, within ABIE40_RS20795at 267.902 kb on - strand, within ABIE40_RS20795at 267.902 kb on - strand, within ABIE40_RS20795at 267.902 kb on - strand, within ABIE40_RS20795at 267.907 kb on + strand, within ABIE40_RS20795at 267.907 kb on + strand, within ABIE40_RS20795at 267.908 kb on - strand, within ABIE40_RS20795at 267.908 kb on - strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.934 kb on + strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 267.935 kb on - strand, within ABIE40_RS20795at 268.009 kb on + strand, within ABIE40_RS20795at 268.009 kb on + strand, within ABIE40_RS20795at 268.010 kb on - strand, within ABIE40_RS20795at 268.010 kb on - strand, within ABIE40_RS20795at 268.010 kb on - strand, within ABIE40_RS20795at 268.022 kb on + strand, within ABIE40_RS20795at 268.079 kb on - strand, within ABIE40_RS20795at 268.079 kb on - strand, within ABIE40_RS20795at 268.175 kb on + strand, within ABIE40_RS20795at 268.176 kb on - strand, within ABIE40_RS20795at 268.294 kb on + strand, within ABIE40_RS20795at 268.294 kb on + strand, within ABIE40_RS20795at 268.357 kb on + strand, within ABIE40_RS20795at 268.357 kb on + strand, within ABIE40_RS20795at 268.357 kb on + strand, within ABIE40_RS20795at 268.358 kb on - strand, within ABIE40_RS20795at 268.358 kb on - strand, within ABIE40_RS20795at 268.358 kb on - strand, within ABIE40_RS20795at 268.358 kb on - strand, within ABIE40_RS20795at 268.358 kb on - strand, within ABIE40_RS20795at 268.471 kb on + strand, within ABIE40_RS20795at 268.471 kb on + strand, within ABIE40_RS20795at 268.540 kb on + strand, within ABIE40_RS20795at 268.624 kb on + strand, within ABIE40_RS20795at 268.624 kb on + strand, within ABIE40_RS20795at 268.624 kb on + strand, within ABIE40_RS20795at 268.658 kb on + strand, within ABIE40_RS20795at 268.810 kb on + strandat 268.810 kb on + strandat 268.810 kb on + strandat 268.811 kb on - strandat 268.811 kb on - strandat 268.867 kb on + strandat 268.909 kb on + strandat 268.909 kb on + strandat 268.909 kb on + strandat 268.909 kb on + strandat 268.910 kb on - strandat 268.910 kb on - strandat 268.910 kb on - strandat 268.910 kb on - strandat 268.935 kb on + strandat 268.935 kb on + strandat 268.936 kb on - strandat 268.936 kb on - strandat 269.098 kb on - strandat 269.140 kb on - strandat 269.364 kb on + strand, within ABIE40_RS20800at 269.364 kb on + strand, within ABIE40_RS20800at 269.364 kb on + strand, within ABIE40_RS20800at 269.364 kb on + strand, within ABIE40_RS20800at 269.365 kb on - strand, within ABIE40_RS20800at 269.365 kb on - strand, within ABIE40_RS20800at 269.365 kb on - strand, within ABIE40_RS20800at 269.376 kb on + strand, within ABIE40_RS20800at 269.377 kb on - strand, within ABIE40_RS20800at 269.377 kb on - strand, within ABIE40_RS20800at 269.394 kb on + strand, within ABIE40_RS20800at 269.395 kb on - strand, within ABIE40_RS20800at 269.513 kb on - strand, within ABIE40_RS20800at 269.752 kb on + strand, within ABIE40_RS20800at 269.752 kb on + strand, within ABIE40_RS20800at 269.753 kb on - strand, within ABIE40_RS20800at 269.753 kb on - strand, within ABIE40_RS20800at 269.758 kb on + strand, within ABIE40_RS20800at 269.758 kb on + strand, within ABIE40_RS20800at 269.759 kb on - strand, within ABIE40_RS20800at 269.759 kb on - strand, within ABIE40_RS20800at 269.759 kb on - strand, within ABIE40_RS20800at 269.759 kb on - strand, within ABIE40_RS20800at 269.759 kb on - strand, within ABIE40_RS20800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
remove
266,706 + ABIE40_RS20780 0.85 -0.3
266,706 + ABIE40_RS20780 0.85 -1.7
266,706 + ABIE40_RS20780 0.85 -0.7
266,706 + ABIE40_RS20780 0.85 +0.5
266,706 + ABIE40_RS20780 0.85 -0.3
266,706 + ABIE40_RS20780 0.85 -0.4
266,706 + ABIE40_RS20780 0.85 -0.3
266,706 + ABIE40_RS20780 0.85 +0.4
266,706 + ABIE40_RS20780 0.85 -2.5
266,706 + ABIE40_RS20780 0.85 -0.6
266,706 + ABIE40_RS20780 0.85 +1.1
266,706 + ABIE40_RS20780 0.85 -0.6
266,707 - ABIE40_RS20780 0.85 -0.4
266,707 - ABIE40_RS20780 0.85 +2.0
266,707 - ABIE40_RS20780 0.85 +0.3
266,707 - ABIE40_RS20780 0.85 +1.4
266,707 - ABIE40_RS20780 0.85 +0.6
266,807 - -0.5
266,974 - +0.2
267,049 + +0.1
267,049 + -1.0
267,049 + -0.5
267,050 - +0.3
267,230 + ABIE40_RS20785 0.79 -0.4
267,230 + ABIE40_RS20785 0.79 +1.2
267,230 + ABIE40_RS20785 0.79 -0.8
267,237 + ABIE40_RS20785 0.82 -0.4
267,237 + ABIE40_RS20785 0.82 -1.2
267,237 + ABIE40_RS20785 0.82 +0.4
267,237 + ABIE40_RS20785 0.82 +1.3
267,238 - ABIE40_RS20785 0.82 -0.0
267,238 - ABIE40_RS20785 0.82 +3.3
267,238 - ABIE40_RS20785 0.82 +1.5
267,289 + -0.2
267,289 + -1.0
267,290 - -0.2
267,298 + +0.4
267,300 + +1.2
267,300 + -0.7
267,301 - -0.9
267,433 + ABIE40_RS20790 0.42 -0.1
267,434 - ABIE40_RS20790 0.43 -0.6
267,501 + ABIE40_RS20790 0.61 +0.1
267,501 + ABIE40_RS20790 0.61 +0.1
267,501 + ABIE40_RS20790 0.61 +0.1
267,501 + ABIE40_RS20790 0.61 +2.1
267,502 - ABIE40_RS20790 0.62 +0.3
267,502 - ABIE40_RS20790 0.62 -1.1
267,502 - ABIE40_RS20790 0.62 -2.4
267,724 + -0.3
267,724 + -0.3
267,725 - -1.0
267,725 - -2.8
267,835 + ABIE40_RS20795 0.16 -0.8
267,836 - ABIE40_RS20795 0.16 -0.6
267,836 - ABIE40_RS20795 0.16 +0.8
267,901 + ABIE40_RS20795 0.21 -0.2
267,901 + ABIE40_RS20795 0.21 -1.4
267,902 - ABIE40_RS20795 0.22 +0.4
267,902 - ABIE40_RS20795 0.22 +0.7
267,902 - ABIE40_RS20795 0.22 -2.1
267,907 + ABIE40_RS20795 0.22 +0.5
267,907 + ABIE40_RS20795 0.22 -0.6
267,908 - ABIE40_RS20795 0.22 -0.3
267,908 - ABIE40_RS20795 0.22 +0.5
267,934 + ABIE40_RS20795 0.24 -1.7
267,934 + ABIE40_RS20795 0.24 +1.4
267,934 + ABIE40_RS20795 0.24 -1.4
267,934 + ABIE40_RS20795 0.24 -0.1
267,934 + ABIE40_RS20795 0.24 +0.9
267,934 + ABIE40_RS20795 0.24 +0.7
267,934 + ABIE40_RS20795 0.24 -1.1
267,934 + ABIE40_RS20795 0.24 +1.6
267,934 + ABIE40_RS20795 0.24 -2.0
267,934 + ABIE40_RS20795 0.24 -1.9
267,934 + ABIE40_RS20795 0.24 -1.0
267,934 + ABIE40_RS20795 0.24 +1.9
267,934 + ABIE40_RS20795 0.24 -0.4
267,935 - ABIE40_RS20795 0.24 +1.8
267,935 - ABIE40_RS20795 0.24 -3.3
267,935 - ABIE40_RS20795 0.24 +0.1
267,935 - ABIE40_RS20795 0.24 -0.9
267,935 - ABIE40_RS20795 0.24 +0.6
267,935 - ABIE40_RS20795 0.24 +0.9
267,935 - ABIE40_RS20795 0.24 +1.2
267,935 - ABIE40_RS20795 0.24 +0.9
267,935 - ABIE40_RS20795 0.24 -1.1
267,935 - ABIE40_RS20795 0.24 +0.1
267,935 - ABIE40_RS20795 0.24 -0.9
267,935 - ABIE40_RS20795 0.24 +0.7
267,935 - ABIE40_RS20795 0.24 -0.2
267,935 - ABIE40_RS20795 0.24 -0.1
267,935 - ABIE40_RS20795 0.24 -1.2
267,935 - ABIE40_RS20795 0.24 +1.3
268,009 + ABIE40_RS20795 0.31 -1.7
268,009 + ABIE40_RS20795 0.31 -0.3
268,010 - ABIE40_RS20795 0.31 +0.6
268,010 - ABIE40_RS20795 0.31 -1.3
268,010 - ABIE40_RS20795 0.31 +0.2
268,022 + ABIE40_RS20795 0.32 +0.3
268,079 - ABIE40_RS20795 0.37 +0.8
268,079 - ABIE40_RS20795 0.37 -1.5
268,175 + ABIE40_RS20795 0.45 +2.0
268,176 - ABIE40_RS20795 0.45 -0.6
268,294 + ABIE40_RS20795 0.55 +0.3
268,294 + ABIE40_RS20795 0.55 +0.9
268,357 + ABIE40_RS20795 0.61 -0.1
268,357 + ABIE40_RS20795 0.61 -0.5
268,357 + ABIE40_RS20795 0.61 -2.1
268,358 - ABIE40_RS20795 0.61 -1.0
268,358 - ABIE40_RS20795 0.61 +0.6
268,358 - ABIE40_RS20795 0.61 -1.1
268,358 - ABIE40_RS20795 0.61 +0.5
268,358 - ABIE40_RS20795 0.61 -0.6
268,471 + ABIE40_RS20795 0.70 +1.4
268,471 + ABIE40_RS20795 0.70 -1.7
268,540 + ABIE40_RS20795 0.76 -0.5
268,624 + ABIE40_RS20795 0.84 -0.2
268,624 + ABIE40_RS20795 0.84 +0.3
268,624 + ABIE40_RS20795 0.84 +1.4
268,658 + ABIE40_RS20795 0.87 +2.2
268,810 + -0.1
268,810 + -0.0
268,810 + +0.5
268,811 - -1.5
268,811 - +0.6
268,867 + +1.6
268,909 + -0.4
268,909 + -0.1
268,909 + -0.4
268,909 + -1.6
268,910 - -0.4
268,910 - -1.1
268,910 - +0.9
268,910 - +0.3
268,935 + -0.5
268,935 + +0.3
268,936 - -0.6
268,936 - +0.2
269,098 - +0.1
269,140 - -1.1
269,364 + ABIE40_RS20800 0.14 +0.5
269,364 + ABIE40_RS20800 0.14 +1.2
269,364 + ABIE40_RS20800 0.14 +0.8
269,364 + ABIE40_RS20800 0.14 +2.2
269,365 - ABIE40_RS20800 0.14 -0.7
269,365 - ABIE40_RS20800 0.14 -0.8
269,365 - ABIE40_RS20800 0.14 +1.4
269,376 + ABIE40_RS20800 0.14 +0.8
269,377 - ABIE40_RS20800 0.14 +0.2
269,377 - ABIE40_RS20800 0.14 -0.3
269,394 + ABIE40_RS20800 0.14 -0.0
269,395 - ABIE40_RS20800 0.14 +0.4
269,513 - ABIE40_RS20800 0.18 +0.1
269,752 + ABIE40_RS20800 0.25 +1.0
269,752 + ABIE40_RS20800 0.25 +0.9
269,753 - ABIE40_RS20800 0.25 -1.6
269,753 - ABIE40_RS20800 0.25 -2.1
269,758 + ABIE40_RS20800 0.25 +1.8
269,758 + ABIE40_RS20800 0.25 -1.3
269,759 - ABIE40_RS20800 0.25 -1.3
269,759 - ABIE40_RS20800 0.25 -0.8
269,759 - ABIE40_RS20800 0.25 -0.2
269,759 - ABIE40_RS20800 0.25 -0.6
269,759 - ABIE40_RS20800 0.25 -0.9

Or see this region's nucleotide sequence