Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20780 and ABIE40_RS20785 are separated by 78 nucleotides ABIE40_RS20785 and ABIE40_RS20790 overlap by 4 nucleotides ABIE40_RS20790 and ABIE40_RS20795 are separated by 11 nucleotides ABIE40_RS20795 and ABIE40_RS20800 are separated by 77 nucleotides
ABIE40_RS20780: ABIE40_RS20780 - carboxyl transferase domain-containing protein, at 265,343 to 266,950
_RS20780
ABIE40_RS20785: ABIE40_RS20785 - type II toxin-antitoxin system HicA family toxin, at 267,029 to 267,283
_RS20785
ABIE40_RS20790: ABIE40_RS20790 - type II toxin-antitoxin system HicB family antitoxin, at 267,280 to 267,639
_RS20790
ABIE40_RS20795: ABIE40_RS20795 - isovaleryl-CoA dehydrogenase, at 267,651 to 268,814
_RS20795
ABIE40_RS20800: ABIE40_RS20800 - indolepyruvate ferredoxin oxidoreductase family protein, at 268,892 to 272,362
_RS20800
Position (kb)
267
268
269 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.706 kb on + strand, within ABIE40_RS20780 at 266.707 kb on - strand, within ABIE40_RS20780 at 266.707 kb on - strand, within ABIE40_RS20780 at 266.707 kb on - strand, within ABIE40_RS20780 at 266.707 kb on - strand, within ABIE40_RS20780 at 266.707 kb on - strand, within ABIE40_RS20780 at 266.807 kb on - strand at 266.974 kb on - strand at 267.049 kb on + strand at 267.049 kb on + strand at 267.049 kb on + strand at 267.050 kb on - strand at 267.230 kb on + strand, within ABIE40_RS20785 at 267.230 kb on + strand, within ABIE40_RS20785 at 267.230 kb on + strand, within ABIE40_RS20785 at 267.237 kb on + strand, within ABIE40_RS20785 at 267.237 kb on + strand, within ABIE40_RS20785 at 267.237 kb on + strand, within ABIE40_RS20785 at 267.237 kb on + strand, within ABIE40_RS20785 at 267.238 kb on - strand, within ABIE40_RS20785 at 267.238 kb on - strand, within ABIE40_RS20785 at 267.238 kb on - strand, within ABIE40_RS20785 at 267.289 kb on + strand at 267.289 kb on + strand at 267.290 kb on - strand at 267.298 kb on + strand at 267.300 kb on + strand at 267.300 kb on + strand at 267.301 kb on - strand at 267.433 kb on + strand, within ABIE40_RS20790 at 267.434 kb on - strand, within ABIE40_RS20790 at 267.501 kb on + strand, within ABIE40_RS20790 at 267.501 kb on + strand, within ABIE40_RS20790 at 267.501 kb on + strand, within ABIE40_RS20790 at 267.501 kb on + strand, within ABIE40_RS20790 at 267.502 kb on - strand, within ABIE40_RS20790 at 267.502 kb on - strand, within ABIE40_RS20790 at 267.502 kb on - strand, within ABIE40_RS20790 at 267.724 kb on + strand at 267.724 kb on + strand at 267.725 kb on - strand at 267.725 kb on - strand at 267.835 kb on + strand, within ABIE40_RS20795 at 267.836 kb on - strand, within ABIE40_RS20795 at 267.836 kb on - strand, within ABIE40_RS20795 at 267.901 kb on + strand, within ABIE40_RS20795 at 267.901 kb on + strand, within ABIE40_RS20795 at 267.902 kb on - strand, within ABIE40_RS20795 at 267.902 kb on - strand, within ABIE40_RS20795 at 267.902 kb on - strand, within ABIE40_RS20795 at 267.907 kb on + strand, within ABIE40_RS20795 at 267.907 kb on + strand, within ABIE40_RS20795 at 267.908 kb on - strand, within ABIE40_RS20795 at 267.908 kb on - strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.934 kb on + strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 267.935 kb on - strand, within ABIE40_RS20795 at 268.009 kb on + strand, within ABIE40_RS20795 at 268.009 kb on + strand, within ABIE40_RS20795 at 268.010 kb on - strand, within ABIE40_RS20795 at 268.010 kb on - strand, within ABIE40_RS20795 at 268.010 kb on - strand, within ABIE40_RS20795 at 268.022 kb on + strand, within ABIE40_RS20795 at 268.079 kb on - strand, within ABIE40_RS20795 at 268.079 kb on - strand, within ABIE40_RS20795 at 268.175 kb on + strand, within ABIE40_RS20795 at 268.176 kb on - strand, within ABIE40_RS20795 at 268.294 kb on + strand, within ABIE40_RS20795 at 268.294 kb on + strand, within ABIE40_RS20795 at 268.357 kb on + strand, within ABIE40_RS20795 at 268.357 kb on + strand, within ABIE40_RS20795 at 268.357 kb on + strand, within ABIE40_RS20795 at 268.358 kb on - strand, within ABIE40_RS20795 at 268.358 kb on - strand, within ABIE40_RS20795 at 268.358 kb on - strand, within ABIE40_RS20795 at 268.358 kb on - strand, within ABIE40_RS20795 at 268.358 kb on - strand, within ABIE40_RS20795 at 268.471 kb on + strand, within ABIE40_RS20795 at 268.471 kb on + strand, within ABIE40_RS20795 at 268.540 kb on + strand, within ABIE40_RS20795 at 268.624 kb on + strand, within ABIE40_RS20795 at 268.624 kb on + strand, within ABIE40_RS20795 at 268.624 kb on + strand, within ABIE40_RS20795 at 268.658 kb on + strand, within ABIE40_RS20795 at 268.810 kb on + strand at 268.810 kb on + strand at 268.810 kb on + strand at 268.811 kb on - strand at 268.811 kb on - strand at 268.867 kb on + strand at 268.909 kb on + strand at 268.909 kb on + strand at 268.909 kb on + strand at 268.909 kb on + strand at 268.910 kb on - strand at 268.910 kb on - strand at 268.910 kb on - strand at 268.910 kb on - strand at 268.935 kb on + strand at 268.935 kb on + strand at 268.936 kb on - strand at 268.936 kb on - strand at 269.098 kb on - strand at 269.140 kb on - strand at 269.364 kb on + strand, within ABIE40_RS20800 at 269.364 kb on + strand, within ABIE40_RS20800 at 269.364 kb on + strand, within ABIE40_RS20800 at 269.364 kb on + strand, within ABIE40_RS20800 at 269.365 kb on - strand, within ABIE40_RS20800 at 269.365 kb on - strand, within ABIE40_RS20800 at 269.365 kb on - strand, within ABIE40_RS20800 at 269.376 kb on + strand, within ABIE40_RS20800 at 269.377 kb on - strand, within ABIE40_RS20800 at 269.377 kb on - strand, within ABIE40_RS20800 at 269.394 kb on + strand, within ABIE40_RS20800 at 269.395 kb on - strand, within ABIE40_RS20800 at 269.513 kb on - strand, within ABIE40_RS20800 at 269.752 kb on + strand, within ABIE40_RS20800 at 269.752 kb on + strand, within ABIE40_RS20800 at 269.753 kb on - strand, within ABIE40_RS20800 at 269.753 kb on - strand, within ABIE40_RS20800 at 269.758 kb on + strand, within ABIE40_RS20800 at 269.758 kb on + strand, within ABIE40_RS20800 at 269.759 kb on - strand, within ABIE40_RS20800 at 269.759 kb on - strand, within ABIE40_RS20800 at 269.759 kb on - strand, within ABIE40_RS20800 at 269.759 kb on - strand, within ABIE40_RS20800 at 269.759 kb on - strand, within ABIE40_RS20800
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 266,706 + ABIE40_RS20780 0.85 -0.3 266,706 + ABIE40_RS20780 0.85 -1.7 266,706 + ABIE40_RS20780 0.85 -0.7 266,706 + ABIE40_RS20780 0.85 +0.5 266,706 + ABIE40_RS20780 0.85 -0.3 266,706 + ABIE40_RS20780 0.85 -0.4 266,706 + ABIE40_RS20780 0.85 -0.3 266,706 + ABIE40_RS20780 0.85 +0.4 266,706 + ABIE40_RS20780 0.85 -2.5 266,706 + ABIE40_RS20780 0.85 -0.6 266,706 + ABIE40_RS20780 0.85 +1.1 266,706 + ABIE40_RS20780 0.85 -0.6 266,707 - ABIE40_RS20780 0.85 -0.4 266,707 - ABIE40_RS20780 0.85 +2.0 266,707 - ABIE40_RS20780 0.85 +0.3 266,707 - ABIE40_RS20780 0.85 +1.4 266,707 - ABIE40_RS20780 0.85 +0.6 266,807 - -0.5 266,974 - +0.2 267,049 + +0.1 267,049 + -1.0 267,049 + -0.5 267,050 - +0.3 267,230 + ABIE40_RS20785 0.79 -0.4 267,230 + ABIE40_RS20785 0.79 +1.2 267,230 + ABIE40_RS20785 0.79 -0.8 267,237 + ABIE40_RS20785 0.82 -0.4 267,237 + ABIE40_RS20785 0.82 -1.2 267,237 + ABIE40_RS20785 0.82 +0.4 267,237 + ABIE40_RS20785 0.82 +1.3 267,238 - ABIE40_RS20785 0.82 -0.0 267,238 - ABIE40_RS20785 0.82 +3.3 267,238 - ABIE40_RS20785 0.82 +1.5 267,289 + -0.2 267,289 + -1.0 267,290 - -0.2 267,298 + +0.4 267,300 + +1.2 267,300 + -0.7 267,301 - -0.9 267,433 + ABIE40_RS20790 0.42 -0.1 267,434 - ABIE40_RS20790 0.43 -0.6 267,501 + ABIE40_RS20790 0.61 +0.1 267,501 + ABIE40_RS20790 0.61 +0.1 267,501 + ABIE40_RS20790 0.61 +0.1 267,501 + ABIE40_RS20790 0.61 +2.1 267,502 - ABIE40_RS20790 0.62 +0.3 267,502 - ABIE40_RS20790 0.62 -1.1 267,502 - ABIE40_RS20790 0.62 -2.4 267,724 + -0.3 267,724 + -0.3 267,725 - -1.0 267,725 - -2.8 267,835 + ABIE40_RS20795 0.16 -0.8 267,836 - ABIE40_RS20795 0.16 -0.6 267,836 - ABIE40_RS20795 0.16 +0.8 267,901 + ABIE40_RS20795 0.21 -0.2 267,901 + ABIE40_RS20795 0.21 -1.4 267,902 - ABIE40_RS20795 0.22 +0.4 267,902 - ABIE40_RS20795 0.22 +0.7 267,902 - ABIE40_RS20795 0.22 -2.1 267,907 + ABIE40_RS20795 0.22 +0.5 267,907 + ABIE40_RS20795 0.22 -0.6 267,908 - ABIE40_RS20795 0.22 -0.3 267,908 - ABIE40_RS20795 0.22 +0.5 267,934 + ABIE40_RS20795 0.24 -1.7 267,934 + ABIE40_RS20795 0.24 +1.4 267,934 + ABIE40_RS20795 0.24 -1.4 267,934 + ABIE40_RS20795 0.24 -0.1 267,934 + ABIE40_RS20795 0.24 +0.9 267,934 + ABIE40_RS20795 0.24 +0.7 267,934 + ABIE40_RS20795 0.24 -1.1 267,934 + ABIE40_RS20795 0.24 +1.6 267,934 + ABIE40_RS20795 0.24 -2.0 267,934 + ABIE40_RS20795 0.24 -1.9 267,934 + ABIE40_RS20795 0.24 -1.0 267,934 + ABIE40_RS20795 0.24 +1.9 267,934 + ABIE40_RS20795 0.24 -0.4 267,935 - ABIE40_RS20795 0.24 +1.8 267,935 - ABIE40_RS20795 0.24 -3.3 267,935 - ABIE40_RS20795 0.24 +0.1 267,935 - ABIE40_RS20795 0.24 -0.9 267,935 - ABIE40_RS20795 0.24 +0.6 267,935 - ABIE40_RS20795 0.24 +0.9 267,935 - ABIE40_RS20795 0.24 +1.2 267,935 - ABIE40_RS20795 0.24 +0.9 267,935 - ABIE40_RS20795 0.24 -1.1 267,935 - ABIE40_RS20795 0.24 +0.1 267,935 - ABIE40_RS20795 0.24 -0.9 267,935 - ABIE40_RS20795 0.24 +0.7 267,935 - ABIE40_RS20795 0.24 -0.2 267,935 - ABIE40_RS20795 0.24 -0.1 267,935 - ABIE40_RS20795 0.24 -1.2 267,935 - ABIE40_RS20795 0.24 +1.3 268,009 + ABIE40_RS20795 0.31 -1.7 268,009 + ABIE40_RS20795 0.31 -0.3 268,010 - ABIE40_RS20795 0.31 +0.6 268,010 - ABIE40_RS20795 0.31 -1.3 268,010 - ABIE40_RS20795 0.31 +0.2 268,022 + ABIE40_RS20795 0.32 +0.3 268,079 - ABIE40_RS20795 0.37 +0.8 268,079 - ABIE40_RS20795 0.37 -1.5 268,175 + ABIE40_RS20795 0.45 +2.0 268,176 - ABIE40_RS20795 0.45 -0.6 268,294 + ABIE40_RS20795 0.55 +0.3 268,294 + ABIE40_RS20795 0.55 +0.9 268,357 + ABIE40_RS20795 0.61 -0.1 268,357 + ABIE40_RS20795 0.61 -0.5 268,357 + ABIE40_RS20795 0.61 -2.1 268,358 - ABIE40_RS20795 0.61 -1.0 268,358 - ABIE40_RS20795 0.61 +0.6 268,358 - ABIE40_RS20795 0.61 -1.1 268,358 - ABIE40_RS20795 0.61 +0.5 268,358 - ABIE40_RS20795 0.61 -0.6 268,471 + ABIE40_RS20795 0.70 +1.4 268,471 + ABIE40_RS20795 0.70 -1.7 268,540 + ABIE40_RS20795 0.76 -0.5 268,624 + ABIE40_RS20795 0.84 -0.2 268,624 + ABIE40_RS20795 0.84 +0.3 268,624 + ABIE40_RS20795 0.84 +1.4 268,658 + ABIE40_RS20795 0.87 +2.2 268,810 + -0.1 268,810 + -0.0 268,810 + +0.5 268,811 - -1.5 268,811 - +0.6 268,867 + +1.6 268,909 + -0.4 268,909 + -0.1 268,909 + -0.4 268,909 + -1.6 268,910 - -0.4 268,910 - -1.1 268,910 - +0.9 268,910 - +0.3 268,935 + -0.5 268,935 + +0.3 268,936 - -0.6 268,936 - +0.2 269,098 - +0.1 269,140 - -1.1 269,364 + ABIE40_RS20800 0.14 +0.5 269,364 + ABIE40_RS20800 0.14 +1.2 269,364 + ABIE40_RS20800 0.14 +0.8 269,364 + ABIE40_RS20800 0.14 +2.2 269,365 - ABIE40_RS20800 0.14 -0.7 269,365 - ABIE40_RS20800 0.14 -0.8 269,365 - ABIE40_RS20800 0.14 +1.4 269,376 + ABIE40_RS20800 0.14 +0.8 269,377 - ABIE40_RS20800 0.14 +0.2 269,377 - ABIE40_RS20800 0.14 -0.3 269,394 + ABIE40_RS20800 0.14 -0.0 269,395 - ABIE40_RS20800 0.14 +0.4 269,513 - ABIE40_RS20800 0.18 +0.1 269,752 + ABIE40_RS20800 0.25 +1.0 269,752 + ABIE40_RS20800 0.25 +0.9 269,753 - ABIE40_RS20800 0.25 -1.6 269,753 - ABIE40_RS20800 0.25 -2.1 269,758 + ABIE40_RS20800 0.25 +1.8 269,758 + ABIE40_RS20800 0.25 -1.3 269,759 - ABIE40_RS20800 0.25 -1.3 269,759 - ABIE40_RS20800 0.25 -0.8 269,759 - ABIE40_RS20800 0.25 -0.2 269,759 - ABIE40_RS20800 0.25 -0.6 269,759 - ABIE40_RS20800 0.25 -0.9
Or see this region's nucleotide sequence