Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20460 and ABIE40_RS20465 are separated by 41 nucleotides ABIE40_RS20465 and ABIE40_RS20470 are separated by 14 nucleotides ABIE40_RS20470 and ABIE40_RS20475 are separated by 232 nucleotides
ABIE40_RS20460: ABIE40_RS20460 - precorrin-3B synthase, at 195,292 to 196,656
_RS20460
ABIE40_RS20465: ABIE40_RS20465 - precorrin-6A synthase (deacetylating), at 196,698 to 197,456
_RS20465
ABIE40_RS20470: ABIE40_RS20470 - DUF2938 domain-containing protein, at 197,471 to 197,950
_RS20470
ABIE40_RS20475: ABIE40_RS20475 - GbsR/MarR family transcriptional regulator, at 198,183 to 198,755
_RS20475
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.112 kb on - strand, within ABIE40_RS20460 at 196.112 kb on - strand, within ABIE40_RS20460 at 196.143 kb on + strand, within ABIE40_RS20460 at 196.667 kb on + strand at 196.668 kb on - strand at 196.668 kb on - strand at 196.699 kb on + strand at 196.700 kb on - strand at 196.732 kb on + strand at 196.732 kb on + strand at 196.733 kb on - strand at 196.733 kb on - strand at 196.733 kb on - strand at 196.736 kb on + strand at 196.736 kb on + strand at 196.737 kb on - strand at 196.737 kb on - strand at 196.739 kb on - strand at 196.847 kb on - strand, within ABIE40_RS20465 at 196.847 kb on - strand, within ABIE40_RS20465 at 197.036 kb on + strand, within ABIE40_RS20465 at 197.111 kb on - strand, within ABIE40_RS20465 at 197.182 kb on + strand, within ABIE40_RS20465 at 197.182 kb on + strand, within ABIE40_RS20465 at 197.183 kb on - strand, within ABIE40_RS20465 at 197.226 kb on - strand, within ABIE40_RS20465 at 197.227 kb on + strand, within ABIE40_RS20465 at 197.227 kb on + strand, within ABIE40_RS20465 at 197.227 kb on + strand, within ABIE40_RS20465 at 197.228 kb on - strand, within ABIE40_RS20465 at 197.228 kb on - strand, within ABIE40_RS20465 at 197.296 kb on + strand, within ABIE40_RS20465 at 197.519 kb on - strand, within ABIE40_RS20470 at 197.519 kb on - strand, within ABIE40_RS20470 at 197.709 kb on + strand, within ABIE40_RS20470 at 197.709 kb on + strand, within ABIE40_RS20470 at 197.710 kb on - strand, within ABIE40_RS20470 at 197.727 kb on + strand, within ABIE40_RS20470 at 197.727 kb on + strand, within ABIE40_RS20470 at 197.727 kb on + strand, within ABIE40_RS20470 at 197.727 kb on + strand, within ABIE40_RS20470 at 197.727 kb on + strand, within ABIE40_RS20470 at 197.727 kb on + strand, within ABIE40_RS20470 at 197.754 kb on + strand, within ABIE40_RS20470 at 197.764 kb on - strand, within ABIE40_RS20470 at 197.764 kb on - strand, within ABIE40_RS20470 at 197.817 kb on + strand, within ABIE40_RS20470 at 197.817 kb on + strand, within ABIE40_RS20470 at 197.817 kb on + strand, within ABIE40_RS20470 at 197.818 kb on - strand, within ABIE40_RS20470 at 197.818 kb on - strand, within ABIE40_RS20470 at 197.818 kb on - strand, within ABIE40_RS20470 at 197.818 kb on - strand, within ABIE40_RS20470 at 197.818 kb on - strand, within ABIE40_RS20470 at 197.942 kb on - strand at 197.986 kb on + strand at 197.987 kb on - strand at 198.023 kb on - strand at 198.132 kb on - strand at 198.133 kb on + strand at 198.134 kb on - strand at 198.273 kb on + strand, within ABIE40_RS20475 at 198.273 kb on + strand, within ABIE40_RS20475 at 198.273 kb on + strand, within ABIE40_RS20475 at 198.273 kb on + strand, within ABIE40_RS20475 at 198.273 kb on + strand, within ABIE40_RS20475 at 198.273 kb on + strand, within ABIE40_RS20475 at 198.273 kb on + strand, within ABIE40_RS20475 at 198.285 kb on + strand, within ABIE40_RS20475 at 198.285 kb on + strand, within ABIE40_RS20475 at 198.285 kb on + strand, within ABIE40_RS20475 at 198.285 kb on + strand, within ABIE40_RS20475 at 198.285 kb on + strand, within ABIE40_RS20475 at 198.285 kb on + strand, within ABIE40_RS20475 at 198.285 kb on + strand, within ABIE40_RS20475 at 198.285 kb on + strand, within ABIE40_RS20475 at 198.286 kb on - strand, within ABIE40_RS20475 at 198.286 kb on - strand, within ABIE40_RS20475 at 198.286 kb on - strand, within ABIE40_RS20475 at 198.286 kb on - strand, within ABIE40_RS20475 at 198.286 kb on - strand, within ABIE40_RS20475 at 198.286 kb on - strand, within ABIE40_RS20475 at 198.352 kb on + strand, within ABIE40_RS20475 at 198.353 kb on - strand, within ABIE40_RS20475 at 198.353 kb on - strand, within ABIE40_RS20475
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 196,112 - ABIE40_RS20460 0.60 -1.3 196,112 - ABIE40_RS20460 0.60 -2.3 196,143 + ABIE40_RS20460 0.62 -2.0 196,667 + -0.1 196,668 - +0.4 196,668 - +0.4 196,699 + -2.9 196,700 - +1.4 196,732 + -2.6 196,732 + -1.3 196,733 - +0.1 196,733 - -0.5 196,733 - -2.4 196,736 + -2.5 196,736 + -1.0 196,737 - +0.5 196,737 - -2.3 196,739 - -1.7 196,847 - ABIE40_RS20465 0.20 +2.1 196,847 - ABIE40_RS20465 0.20 -0.7 197,036 + ABIE40_RS20465 0.45 -0.7 197,111 - ABIE40_RS20465 0.54 -2.3 197,182 + ABIE40_RS20465 0.64 -2.6 197,182 + ABIE40_RS20465 0.64 -1.6 197,183 - ABIE40_RS20465 0.64 -1.5 197,226 - ABIE40_RS20465 0.70 -2.9 197,227 + ABIE40_RS20465 0.70 -0.5 197,227 + ABIE40_RS20465 0.70 -1.0 197,227 + ABIE40_RS20465 0.70 +0.1 197,228 - ABIE40_RS20465 0.70 -0.4 197,228 - ABIE40_RS20465 0.70 -3.5 197,296 + ABIE40_RS20465 0.79 -1.2 197,519 - ABIE40_RS20470 0.10 -0.7 197,519 - ABIE40_RS20470 0.10 +0.9 197,709 + ABIE40_RS20470 0.50 -2.3 197,709 + ABIE40_RS20470 0.50 +1.1 197,710 - ABIE40_RS20470 0.50 +2.7 197,727 + ABIE40_RS20470 0.53 -3.7 197,727 + ABIE40_RS20470 0.53 -0.1 197,727 + ABIE40_RS20470 0.53 -1.1 197,727 + ABIE40_RS20470 0.53 -1.0 197,727 + ABIE40_RS20470 0.53 -0.1 197,727 + ABIE40_RS20470 0.53 -0.7 197,754 + ABIE40_RS20470 0.59 -1.2 197,764 - ABIE40_RS20470 0.61 -0.2 197,764 - ABIE40_RS20470 0.61 +0.9 197,817 + ABIE40_RS20470 0.72 -0.6 197,817 + ABIE40_RS20470 0.72 -0.5 197,817 + ABIE40_RS20470 0.72 -2.2 197,818 - ABIE40_RS20470 0.72 -1.6 197,818 - ABIE40_RS20470 0.72 -0.1 197,818 - ABIE40_RS20470 0.72 -0.3 197,818 - ABIE40_RS20470 0.72 -0.2 197,818 - ABIE40_RS20470 0.72 -1.8 197,942 - -1.1 197,986 + -0.1 197,987 - -0.1 198,023 - -3.2 198,132 - -0.4 198,133 + +1.0 198,134 - -0.8 198,273 + ABIE40_RS20475 0.16 +0.5 198,273 + ABIE40_RS20475 0.16 -0.2 198,273 + ABIE40_RS20475 0.16 -1.5 198,273 + ABIE40_RS20475 0.16 +0.2 198,273 + ABIE40_RS20475 0.16 +0.3 198,273 + ABIE40_RS20475 0.16 -0.8 198,273 + ABIE40_RS20475 0.16 +1.2 198,285 + ABIE40_RS20475 0.18 -0.4 198,285 + ABIE40_RS20475 0.18 -0.2 198,285 + ABIE40_RS20475 0.18 -0.6 198,285 + ABIE40_RS20475 0.18 -0.9 198,285 + ABIE40_RS20475 0.18 -2.2 198,285 + ABIE40_RS20475 0.18 -0.0 198,285 + ABIE40_RS20475 0.18 -0.1 198,285 + ABIE40_RS20475 0.18 +0.7 198,286 - ABIE40_RS20475 0.18 +1.3 198,286 - ABIE40_RS20475 0.18 -0.8 198,286 - ABIE40_RS20475 0.18 -0.2 198,286 - ABIE40_RS20475 0.18 +2.4 198,286 - ABIE40_RS20475 0.18 +1.1 198,286 - ABIE40_RS20475 0.18 -0.8 198,352 + ABIE40_RS20475 0.29 +0.8 198,353 - ABIE40_RS20475 0.30 -3.4 198,353 - ABIE40_RS20475 0.30 +0.0
Or see this region's nucleotide sequence