Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS14295

Experiment: Carnitine Hydrochloride (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carnitine Hydrochloride (C)
2,802,090	+				+0.2
2,802,090	+				+1.5
2,802,092	+				-0.1
2,802,093	-				-0.2
2,802,093	-				-0.1
2,802,230	+		ABIE40_RS14290	0.16	-2.2
2,802,230	+		ABIE40_RS14290	0.16	-1.4
2,802,230	+		ABIE40_RS14290	0.16	-0.4
2,802,231	-		ABIE40_RS14290	0.16	-0.3
2,802,231	-		ABIE40_RS14290	0.16	-0.1
2,802,371	+		ABIE40_RS14290	0.30	+0.0
2,802,371	+		ABIE40_RS14290	0.30	-0.8
2,802,371	+		ABIE40_RS14290	0.30	-0.9
2,802,371	+		ABIE40_RS14290	0.30	-2.0
2,802,371	+		ABIE40_RS14290	0.30	+0.6
2,802,371	+		ABIE40_RS14290	0.30	-0.4
2,802,372	-		ABIE40_RS14290	0.30	+0.9
2,802,372	-		ABIE40_RS14290	0.30	-0.1
2,802,372	-		ABIE40_RS14290	0.30	+2.8
2,802,372	-		ABIE40_RS14290	0.30	+0.7
2,802,372	-		ABIE40_RS14290	0.30	-1.1
2,802,372	-		ABIE40_RS14290	0.30	+0.1
2,802,372	-		ABIE40_RS14290	0.30	-1.5
2,802,372	-		ABIE40_RS14290	0.30	-1.9
2,802,372	-		ABIE40_RS14290	0.30	-1.0
2,802,372	-		ABIE40_RS14290	0.30	+0.2
2,802,378	-		ABIE40_RS14290	0.30	+0.3
2,802,378	-		ABIE40_RS14290	0.30	+1.5
2,802,435	+		ABIE40_RS14290	0.36	-1.2
2,802,435	+		ABIE40_RS14290	0.36	+0.9
2,802,435	+		ABIE40_RS14290	0.36	-0.2
2,802,435	+		ABIE40_RS14290	0.36	+3.9
2,802,435	+		ABIE40_RS14290	0.36	-0.8
2,802,436	-		ABIE40_RS14290	0.36	+1.8
2,802,436	-		ABIE40_RS14290	0.36	+0.2
2,802,436	-		ABIE40_RS14290	0.36	-0.1
2,802,436	-		ABIE40_RS14290	0.36	+1.0
2,802,437	+		ABIE40_RS14290	0.36	-0.4
2,802,437	+		ABIE40_RS14290	0.36	+0.0
2,802,437	+		ABIE40_RS14290	0.36	+0.6
2,802,437	+		ABIE40_RS14290	0.36	-0.0
2,802,438	-		ABIE40_RS14290	0.36	-2.4
2,802,438	-		ABIE40_RS14290	0.36	-0.3
2,802,438	-		ABIE40_RS14290	0.36	-0.6
2,802,438	-		ABIE40_RS14290	0.36	-0.2
2,802,438	-		ABIE40_RS14290	0.36	-1.4
2,802,438	-		ABIE40_RS14290	0.36	+0.0
2,802,438	-		ABIE40_RS14290	0.36	+0.4
2,802,438	-		ABIE40_RS14290	0.36	-0.1
2,802,533	+		ABIE40_RS14290	0.46	+2.5
2,802,533	+		ABIE40_RS14290	0.46	-0.8
2,802,534	-		ABIE40_RS14290	0.46	-1.4
2,802,534	-		ABIE40_RS14290	0.46	-0.1
2,802,534	-		ABIE40_RS14290	0.46	+0.1
2,802,534	-		ABIE40_RS14290	0.46	+0.4
2,802,584	+		ABIE40_RS14290	0.51	-0.6
2,802,584	+		ABIE40_RS14290	0.51	-0.4
2,802,584	+		ABIE40_RS14290	0.51	+0.2
2,802,585	-		ABIE40_RS14290	0.51	-1.1
2,802,585	-		ABIE40_RS14290	0.51	+2.4
2,802,599	+		ABIE40_RS14290	0.53	-0.4
2,802,645	+		ABIE40_RS14290	0.57	+1.7
2,802,646	-		ABIE40_RS14290	0.57	-0.1
2,802,646	-		ABIE40_RS14290	0.57	+1.1
2,802,656	+		ABIE40_RS14290	0.58	+1.5
2,802,656	+		ABIE40_RS14290	0.58	-2.7
2,802,656	+		ABIE40_RS14290	0.58	+0.3
2,802,656	+		ABIE40_RS14290	0.58	-0.1
2,802,656	+		ABIE40_RS14290	0.58	+1.1
2,802,656	+		ABIE40_RS14290	0.58	-2.8
2,802,657	-		ABIE40_RS14290	0.59	+0.2
2,802,657	-		ABIE40_RS14290	0.59	+0.3
2,802,701	+		ABIE40_RS14290	0.63	+0.9
2,802,701	+		ABIE40_RS14290	0.63	-0.4
2,802,701	+		ABIE40_RS14290	0.63	-1.1
2,802,701	+		ABIE40_RS14290	0.63	+0.3
2,802,701	+		ABIE40_RS14290	0.63	-0.1
2,802,701	+		ABIE40_RS14290	0.63	+1.3
2,802,701	+		ABIE40_RS14290	0.63	+0.7
2,802,701	+		ABIE40_RS14290	0.63	-0.4
2,802,702	-		ABIE40_RS14290	0.63	-1.0
2,802,702	-		ABIE40_RS14290	0.63	+0.3
2,802,702	-		ABIE40_RS14290	0.63	+0.5
2,802,702	-		ABIE40_RS14290	0.63	-0.3
2,802,825	+		ABIE40_RS14290	0.75	-0.3
2,802,825	+		ABIE40_RS14290	0.75	+0.5
2,802,826	-		ABIE40_RS14290	0.76	-1.3
2,802,826	-		ABIE40_RS14290	0.76	+1.1
2,802,826	-		ABIE40_RS14290	0.76	+0.7
2,802,888	+		ABIE40_RS14290	0.82	-0.7
2,802,889	-		ABIE40_RS14290	0.82	-0.8
2,802,917	+		ABIE40_RS14290	0.85	-1.2
2,802,917	+		ABIE40_RS14290	0.85	-1.1
2,802,917	+		ABIE40_RS14290	0.85	-1.4
2,802,917	+		ABIE40_RS14290	0.85	+0.1
2,802,923	+		ABIE40_RS14290	0.85	-1.8
2,802,923	+		ABIE40_RS14290	0.85	+0.1
2,802,923	+		ABIE40_RS14290	0.85	-0.5
2,802,924	-		ABIE40_RS14290	0.85	+0.6
2,803,094	+				+1.5
2,803,094	+				-1.0
2,803,094	+				-0.5
2,803,094	+				-2.3
2,803,095	-				-0.1
2,803,783	+		ABIE40_RS14295	0.37	-0.5
2,803,856	-		ABIE40_RS14295	0.41	+0.8
2,803,856	-		ABIE40_RS14295	0.41	+0.3
2,804,003	+		ABIE40_RS14295	0.49	-0.3
2,804,003	+		ABIE40_RS14295	0.49	+0.3
2,804,006	+		ABIE40_RS14295	0.49	-0.4
2,804,006	+		ABIE40_RS14295	0.49	-0.4
2,804,006	+		ABIE40_RS14295	0.49	-0.7
2,804,006	+		ABIE40_RS14295	0.49	+0.7
2,804,006	+		ABIE40_RS14295	0.49	-0.1
2,804,007	-		ABIE40_RS14295	0.49	-2.1
2,804,007	-		ABIE40_RS14295	0.49	+0.7
2,804,007	-		ABIE40_RS14295	0.49	-1.1
2,804,007	-		ABIE40_RS14295	0.49	-0.6
2,804,007	-		ABIE40_RS14295	0.49	+0.2
2,804,008	+		ABIE40_RS14295	0.49	-0.5
2,804,008	+		ABIE40_RS14295	0.49	-0.7
2,804,008	+		ABIE40_RS14295	0.49	-0.9
2,804,008	+		ABIE40_RS14295	0.49	-1.7
2,804,008	+		ABIE40_RS14295	0.49	+2.3
2,804,008	+		ABIE40_RS14295	0.49	-2.0
2,804,008	+		ABIE40_RS14295	0.49	-0.6
2,804,008	+		ABIE40_RS14295	0.49	-0.5
2,804,008	+		ABIE40_RS14295	0.49	+0.3
2,804,008	+		ABIE40_RS14295	0.49	-2.5
2,804,008	+		ABIE40_RS14295	0.49	-0.2
2,804,008	+		ABIE40_RS14295	0.49	-1.4
2,804,008	+		ABIE40_RS14295	0.49	-0.3
2,804,008	+		ABIE40_RS14295	0.49	+1.5
2,804,008	+		ABIE40_RS14295	0.49	-0.9
2,804,008	+		ABIE40_RS14295	0.49	-0.3
2,804,009	-		ABIE40_RS14295	0.49	-1.1
2,804,009	-		ABIE40_RS14295	0.49	+3.7
2,804,009	-		ABIE40_RS14295	0.49	+0.7
2,804,009	-		ABIE40_RS14295	0.49	-0.9
2,804,009	-		ABIE40_RS14295	0.49	+0.3
2,804,009	-		ABIE40_RS14295	0.49	-0.6
2,804,468	-		ABIE40_RS14295	0.73	-0.2
2,804,468	-		ABIE40_RS14295	0.73	+1.8
2,804,468	-		ABIE40_RS14295	0.73	+0.8
2,804,644	+		ABIE40_RS14295	0.82	+1.1
2,804,644	+		ABIE40_RS14295	0.82	-1.2
2,804,644	+		ABIE40_RS14295	0.82	-0.7
2,804,644	+		ABIE40_RS14295	0.82	-0.6
2,804,644	+		ABIE40_RS14295	0.82	+0.0
2,804,644	+		ABIE40_RS14295	0.82	-0.9
2,804,645	-		ABIE40_RS14295	0.82	-0.7
2,804,645	-		ABIE40_RS14295	0.82	-0.6
2,804,645	-		ABIE40_RS14295	0.82	+1.5
2,804,645	-		ABIE40_RS14295	0.82	+0.0
2,804,665	+		ABIE40_RS14295	0.83	+0.6
2,804,666	-		ABIE40_RS14295	0.84	+0.3
2,804,833	+				+0.5
2,804,833	+				-0.7
2,804,834	-				+1.5
2,804,834	-				+0.0
2,804,834	-				+1.1
2,804,940	-				+0.3
2,804,965	+				-0.2
2,804,965	+				+0.5
2,804,965	+				-0.4
2,804,966	-				-0.2
2,804,970	+				-1.9
2,804,970	+				-0.3
2,804,970	+				-0.2
2,804,970	+				-0.4
2,804,970	+				+0.0
2,804,970	+				+0.9
2,804,971	-				+0.6
2,804,971	-				-1.0
2,804,971	-				+0.1
2,804,971	-				-0.1
2,804,971	-				-0.1
2,804,971	-				-0.3
2,805,031	-				-0.1
2,805,114	+				-0.2
2,805,123	+				+0.7
2,805,123	+				-0.1
2,805,124	-				-1.5
2,805,124	-				+0.1
2,805,174	-				+0.8
2,805,174	-				+1.6
2,805,177	+				+0.0
2,805,178	-				-0.0
2,805,277	+				-1.3
2,805,277	+				-0.3
2,805,278	-				-0.4
2,805,278	-				-0.5
2,805,278	-				+0.6
2,805,290	-				-0.2
2,805,290	-				-1.5
2,805,290	-				+0.3
2,805,298	+				-2.5
2,805,298	+				-0.8
2,805,298	+				-0.5
2,805,298	+				-0.4
2,805,298	+				-2.5
2,805,298	+				+0.1
2,805,298	+				+0.1
2,805,298	+				-2.5
2,805,298	+				+0.4
2,805,298	+				+0.3
2,805,298	+				+0.9
2,805,298	+				-0.5
2,805,298	+				-2.5
2,805,299	-				+0.3
2,805,299	-				-1.0
2,805,299	-				-1.2
2,805,299	-				-0.4
2,805,299	-				-1.4
2,805,299	-				+0.3
2,805,299	-				+0.0
2,805,299	-				-0.1
2,805,299	-				-0.5
2,805,299	-				+0.4
2,805,299	-				-0.0
2,805,299	-				-0.7
2,805,299	-				-1.3
2,805,299	-				-0.9
2,805,299	-				+0.8
2,805,299	-				-0.3
2,805,299	-				+0.3
2,805,299	-				+2.8
2,805,299	-				+1.1
2,805,302	+				-0.7
2,805,302	+				-1.4
2,805,302	+				+1.0
2,805,302	+				-0.7
2,805,302	+				-0.5
2,805,302	+				+0.5
2,805,302	+				-1.1
2,805,302	+				+0.6
2,805,302	+				+0.4
2,805,302	+				+0.5
2,805,302	+				+0.4
2,805,303	-				+1.7
2,805,303	-				+1.5
2,805,303	-				-0.1
2,805,303	-				+0.5
2,805,303	-				-0.7
2,805,303	-				+2.0
2,805,303	-				+0.2
2,805,357	-		ABIE40_RS14300	0.12	+0.5
2,805,357	-		ABIE40_RS14300	0.12	+0.6
2,805,357	-		ABIE40_RS14300	0.12	-0.4
2,805,367	+		ABIE40_RS14300	0.13	-0.6
2,805,367	+		ABIE40_RS14300	0.13	-0.7
2,805,367	+		ABIE40_RS14300	0.13	+0.3
2,805,367	+		ABIE40_RS14300	0.13	-1.1
2,805,367	+		ABIE40_RS14300	0.13	-0.2
2,805,367	+		ABIE40_RS14300	0.13	+0.4
2,805,368	-		ABIE40_RS14300	0.14	+0.0
2,805,368	-		ABIE40_RS14300	0.14	+0.2
2,805,368	-		ABIE40_RS14300	0.14	+2.5
2,805,368	-		ABIE40_RS14300	0.14	-3.3
2,805,368	-		ABIE40_RS14300	0.14	-1.8
2,805,368	-		ABIE40_RS14300	0.14	+0.2
2,805,427	+		ABIE40_RS14300	0.21	+1.0
2,805,427	+		ABIE40_RS14300	0.21	+1.0
2,805,428	-		ABIE40_RS14300	0.21	+1.3
2,805,428	-		ABIE40_RS14300	0.21	+0.5
2,805,439	+		ABIE40_RS14300	0.22	+0.1
2,805,440	-		ABIE40_RS14300	0.22	+4.5
2,805,440	-		ABIE40_RS14300	0.22	+0.3
2,805,440	-		ABIE40_RS14300	0.22	-0.4
2,805,463	+		ABIE40_RS14300	0.25	-1.2
2,805,463	+		ABIE40_RS14300	0.25	-0.0
2,805,464	-		ABIE40_RS14300	0.25	-0.0
2,805,464	-		ABIE40_RS14300	0.25	-1.3
2,805,464	-		ABIE40_RS14300	0.25	-0.4
2,805,464	-		ABIE40_RS14300	0.25	-1.2
2,805,464	-		ABIE40_RS14300	0.25	-0.3
2,805,464	-		ABIE40_RS14300	0.25	+0.5
2,805,468	-		ABIE40_RS14300	0.26	-0.5
2,805,565	+		ABIE40_RS14300	0.37	-1.2
2,805,566	-		ABIE40_RS14300	0.37	-0.3
2,805,586	+		ABIE40_RS14300	0.40	-0.1
2,805,586	+		ABIE40_RS14300	0.40	-0.4
2,805,586	+		ABIE40_RS14300	0.40	+0.9
2,805,589	+		ABIE40_RS14300	0.40	-0.1
2,805,589	+		ABIE40_RS14300	0.40	+0.4
2,805,589	+		ABIE40_RS14300	0.40	-0.5
2,805,589	+		ABIE40_RS14300	0.40	-0.1
2,805,590	-		ABIE40_RS14300	0.40	+0.6
2,805,590	-		ABIE40_RS14300	0.40	-0.2
2,805,590	-		ABIE40_RS14300	0.40	-0.9
2,805,697	+		ABIE40_RS14300	0.53	-2.2
2,805,698	-		ABIE40_RS14300	0.53	-1.5
2,805,698	-		ABIE40_RS14300	0.53	-3.8
2,805,698	-		ABIE40_RS14300	0.53	-0.8
2,805,698	-		ABIE40_RS14300	0.53	+0.2
2,805,698	-		ABIE40_RS14300	0.53	+1.0
2,805,791	+		ABIE40_RS14300	0.64	-1.1
2,805,792	-		ABIE40_RS14300	0.64	-0.7
2,805,792	-		ABIE40_RS14300	0.64	+0.5
2,805,878	+		ABIE40_RS14300	0.75	-0.1
2,805,879	-		ABIE40_RS14300	0.75	-0.0
2,805,879	-		ABIE40_RS14300	0.75	-1.5
2,805,879	-		ABIE40_RS14300	0.75	-0.4