Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04765 and ABIE40_RS04770 are separated by 165 nucleotides ABIE40_RS04770 and ABIE40_RS04775 are separated by 51 nucleotides ABIE40_RS04775 and ABIE40_RS04780 are separated by 78 nucleotides
ABIE40_RS04765: ABIE40_RS04765 - MDR family MFS transporter, at 934,412 to 935,869
_RS04765
ABIE40_RS04770: ABIE40_RS04770 - TetR/AcrR family transcriptional regulator, at 936,035 to 936,583
_RS04770
ABIE40_RS04775: ABIE40_RS04775 - hypothetical protein, at 936,635 to 936,946
_RS04775
ABIE40_RS04780: ABIE40_RS04780 - hypothetical protein, at 937,025 to 937,648
_RS04780
Position (kb) 936
937 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 935.242 kb on - strand, within ABIE40_RS04765 at 935.242 kb on - strand, within ABIE40_RS04765 at 935.561 kb on + strand, within ABIE40_RS04765 at 935.561 kb on + strand, within ABIE40_RS04765 at 935.561 kb on + strand, within ABIE40_RS04765 at 935.561 kb on + strand, within ABIE40_RS04765 at 935.561 kb on + strand, within ABIE40_RS04765 at 935.562 kb on - strand, within ABIE40_RS04765 at 935.562 kb on - strand, within ABIE40_RS04765 at 935.562 kb on - strand, within ABIE40_RS04765 at 935.562 kb on - strand, within ABIE40_RS04765 at 935.621 kb on + strand, within ABIE40_RS04765 at 935.622 kb on - strand, within ABIE40_RS04765 at 935.622 kb on - strand, within ABIE40_RS04765 at 935.718 kb on - strand, within ABIE40_RS04765 at 935.867 kb on + strand at 935.867 kb on + strand at 935.867 kb on + strand at 935.867 kb on + strand at 935.868 kb on - strand at 935.923 kb on + strand at 935.923 kb on + strand at 935.924 kb on - strand at 935.924 kb on - strand at 935.924 kb on - strand at 935.924 kb on - strand at 935.924 kb on - strand at 935.924 kb on - strand at 935.990 kb on - strand at 935.990 kb on - strand at 935.996 kb on + strand at 935.996 kb on + strand at 935.996 kb on + strand at 935.997 kb on - strand at 935.997 kb on - strand at 935.997 kb on - strand at 935.997 kb on - strand at 935.997 kb on - strand at 935.997 kb on - strand at 935.997 kb on - strand at 935.997 kb on - strand at 935.997 kb on - strand at 935.997 kb on - strand at 935.997 kb on - strand at 935.997 kb on - strand at 935.998 kb on + strand at 935.998 kb on + strand at 935.998 kb on + strand at 935.998 kb on + strand at 935.999 kb on - strand at 936.060 kb on + strand at 936.061 kb on - strand at 936.061 kb on - strand at 936.200 kb on + strand, within ABIE40_RS04770 at 936.201 kb on - strand, within ABIE40_RS04770 at 936.230 kb on + strand, within ABIE40_RS04770 at 936.230 kb on + strand, within ABIE40_RS04770 at 936.231 kb on - strand, within ABIE40_RS04770 at 936.231 kb on - strand, within ABIE40_RS04770 at 936.231 kb on - strand, within ABIE40_RS04770 at 936.231 kb on - strand, within ABIE40_RS04770 at 936.233 kb on - strand, within ABIE40_RS04770 at 936.413 kb on + strand, within ABIE40_RS04770 at 936.413 kb on + strand, within ABIE40_RS04770 at 936.413 kb on + strand, within ABIE40_RS04770 at 936.413 kb on + strand, within ABIE40_RS04770 at 936.413 kb on + strand, within ABIE40_RS04770 at 936.413 kb on + strand, within ABIE40_RS04770 at 936.413 kb on + strand, within ABIE40_RS04770 at 936.414 kb on - strand, within ABIE40_RS04770 at 936.414 kb on - strand, within ABIE40_RS04770 at 936.581 kb on + strand at 936.582 kb on - strand at 936.582 kb on - strand at 936.582 kb on - strand at 936.582 kb on - strand at 936.582 kb on - strand at 936.582 kb on - strand at 936.708 kb on + strand, within ABIE40_RS04775 at 936.787 kb on - strand, within ABIE40_RS04775 at 936.787 kb on - strand, within ABIE40_RS04775 at 936.787 kb on - strand, within ABIE40_RS04775 at 936.855 kb on + strand, within ABIE40_RS04775 at 936.855 kb on + strand, within ABIE40_RS04775 at 936.856 kb on - strand, within ABIE40_RS04775 at 936.856 kb on - strand, within ABIE40_RS04775 at 936.856 kb on - strand, within ABIE40_RS04775 at 936.856 kb on - strand, within ABIE40_RS04775 at 937.027 kb on - strand at 937.027 kb on - strand at 937.027 kb on - strand at 937.047 kb on + strand at 937.047 kb on + strand at 937.047 kb on + strand at 937.047 kb on + strand at 937.047 kb on + strand at 937.047 kb on + strand at 937.047 kb on + strand at 937.047 kb on + strand at 937.047 kb on + strand at 937.047 kb on + strand at 937.047 kb on + strand at 937.047 kb on + strand at 937.048 kb on - strand at 937.048 kb on - strand at 937.048 kb on - strand at 937.048 kb on - strand at 937.048 kb on - strand at 937.048 kb on - strand at 937.048 kb on - strand at 937.048 kb on - strand at 937.048 kb on - strand at 937.048 kb on - strand at 937.068 kb on + strand at 937.068 kb on + strand at 937.069 kb on - strand at 937.069 kb on - strand at 937.107 kb on + strand, within ABIE40_RS04780 at 937.107 kb on + strand, within ABIE40_RS04780 at 937.107 kb on + strand, within ABIE40_RS04780 at 937.140 kb on + strand, within ABIE40_RS04780 at 937.141 kb on - strand, within ABIE40_RS04780 at 937.141 kb on - strand, within ABIE40_RS04780 at 937.141 kb on - strand, within ABIE40_RS04780 at 937.141 kb on - strand, within ABIE40_RS04780 at 937.167 kb on + strand, within ABIE40_RS04780 at 937.168 kb on - strand, within ABIE40_RS04780 at 937.168 kb on - strand, within ABIE40_RS04780 at 937.203 kb on + strand, within ABIE40_RS04780 at 937.203 kb on + strand, within ABIE40_RS04780 at 937.203 kb on + strand, within ABIE40_RS04780 at 937.204 kb on - strand, within ABIE40_RS04780 at 937.204 kb on - strand, within ABIE40_RS04780 at 937.204 kb on - strand, within ABIE40_RS04780 at 937.204 kb on - strand, within ABIE40_RS04780 at 937.204 kb on - strand, within ABIE40_RS04780 at 937.227 kb on + strand, within ABIE40_RS04780 at 937.227 kb on + strand, within ABIE40_RS04780 at 937.227 kb on + strand, within ABIE40_RS04780 at 937.227 kb on + strand, within ABIE40_RS04780 at 937.227 kb on + strand, within ABIE40_RS04780 at 937.227 kb on + strand, within ABIE40_RS04780 at 937.227 kb on + strand, within ABIE40_RS04780 at 937.227 kb on + strand, within ABIE40_RS04780 at 937.228 kb on - strand, within ABIE40_RS04780 at 937.228 kb on - strand, within ABIE40_RS04780 at 937.228 kb on - strand, within ABIE40_RS04780 at 937.228 kb on - strand, within ABIE40_RS04780 at 937.228 kb on - strand, within ABIE40_RS04780 at 937.228 kb on - strand, within ABIE40_RS04780 at 937.228 kb on - strand, within ABIE40_RS04780 at 937.228 kb on - strand, within ABIE40_RS04780 at 937.228 kb on - strand, within ABIE40_RS04780 at 937.228 kb on - strand, within ABIE40_RS04780 at 937.450 kb on - strand, within ABIE40_RS04780 at 937.450 kb on - strand, within ABIE40_RS04780 at 937.450 kb on - strand, within ABIE40_RS04780 at 937.488 kb on + strand, within ABIE40_RS04780 at 937.489 kb on - strand, within ABIE40_RS04780
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 935,242 - ABIE40_RS04765 0.57 -0.5 935,242 - ABIE40_RS04765 0.57 -0.4 935,561 + ABIE40_RS04765 0.79 -1.1 935,561 + ABIE40_RS04765 0.79 -0.5 935,561 + ABIE40_RS04765 0.79 +0.9 935,561 + ABIE40_RS04765 0.79 -0.0 935,561 + ABIE40_RS04765 0.79 -0.4 935,562 - ABIE40_RS04765 0.79 -0.5 935,562 - ABIE40_RS04765 0.79 +0.4 935,562 - ABIE40_RS04765 0.79 -0.3 935,562 - ABIE40_RS04765 0.79 +0.1 935,621 + ABIE40_RS04765 0.83 -1.3 935,622 - ABIE40_RS04765 0.83 +0.7 935,622 - ABIE40_RS04765 0.83 +0.1 935,718 - ABIE40_RS04765 0.90 +0.6 935,867 + -0.6 935,867 + -0.6 935,867 + -2.1 935,867 + -0.4 935,868 - -2.0 935,923 + -0.8 935,923 + -0.4 935,924 - -1.0 935,924 - -0.3 935,924 - -0.9 935,924 - +0.3 935,924 - -0.3 935,924 - -0.6 935,990 - +1.2 935,990 - -1.5 935,996 + -0.6 935,996 + -0.7 935,996 + -0.5 935,997 - -3.3 935,997 - -3.1 935,997 - -0.7 935,997 - -0.4 935,997 - -2.3 935,997 - -0.9 935,997 - -3.8 935,997 - -1.5 935,997 - -0.4 935,997 - -1.8 935,997 - +0.3 935,997 - +0.6 935,998 + +0.1 935,998 + +1.6 935,998 + +0.1 935,998 + -1.0 935,999 - -2.6 936,060 + -2.8 936,061 - -2.0 936,061 - -3.7 936,200 + ABIE40_RS04770 0.30 -1.6 936,201 - ABIE40_RS04770 0.30 -1.9 936,230 + ABIE40_RS04770 0.36 -3.1 936,230 + ABIE40_RS04770 0.36 -3.3 936,231 - ABIE40_RS04770 0.36 -1.7 936,231 - ABIE40_RS04770 0.36 -1.4 936,231 - ABIE40_RS04770 0.36 -2.5 936,231 - ABIE40_RS04770 0.36 +0.6 936,233 - ABIE40_RS04770 0.36 -1.4 936,413 + ABIE40_RS04770 0.69 -1.8 936,413 + ABIE40_RS04770 0.69 -1.0 936,413 + ABIE40_RS04770 0.69 -1.4 936,413 + ABIE40_RS04770 0.69 -1.1 936,413 + ABIE40_RS04770 0.69 -2.5 936,413 + ABIE40_RS04770 0.69 -1.2 936,413 + ABIE40_RS04770 0.69 -3.7 936,414 - ABIE40_RS04770 0.69 -1.0 936,414 - ABIE40_RS04770 0.69 +1.0 936,581 + +0.1 936,582 - +0.9 936,582 - -0.1 936,582 - +0.8 936,582 - -2.7 936,582 - -0.3 936,582 - -0.3 936,708 + ABIE40_RS04775 0.23 -0.9 936,787 - ABIE40_RS04775 0.49 +0.4 936,787 - ABIE40_RS04775 0.49 +0.1 936,787 - ABIE40_RS04775 0.49 +0.0 936,855 + ABIE40_RS04775 0.71 +0.0 936,855 + ABIE40_RS04775 0.71 +0.4 936,856 - ABIE40_RS04775 0.71 -0.2 936,856 - ABIE40_RS04775 0.71 -1.1 936,856 - ABIE40_RS04775 0.71 +0.3 936,856 - ABIE40_RS04775 0.71 -0.6 937,027 - +0.3 937,027 - -0.9 937,027 - -0.0 937,047 + +0.1 937,047 + -1.2 937,047 + +1.1 937,047 + -0.1 937,047 + +2.1 937,047 + -1.1 937,047 + +0.2 937,047 + +1.1 937,047 + -0.1 937,047 + +0.5 937,047 + +0.8 937,047 + -1.0 937,048 - +0.3 937,048 - +0.3 937,048 - +0.2 937,048 - -0.8 937,048 - +0.0 937,048 - -2.6 937,048 - -0.2 937,048 - +0.7 937,048 - +0.6 937,048 - +1.9 937,068 + -0.3 937,068 + -1.0 937,069 - +0.3 937,069 - -0.2 937,107 + ABIE40_RS04780 0.13 +0.1 937,107 + ABIE40_RS04780 0.13 -0.5 937,107 + ABIE40_RS04780 0.13 +0.7 937,140 + ABIE40_RS04780 0.18 -0.3 937,141 - ABIE40_RS04780 0.19 -0.6 937,141 - ABIE40_RS04780 0.19 -2.4 937,141 - ABIE40_RS04780 0.19 -0.2 937,141 - ABIE40_RS04780 0.19 +1.3 937,167 + ABIE40_RS04780 0.23 +1.7 937,168 - ABIE40_RS04780 0.23 -0.8 937,168 - ABIE40_RS04780 0.23 -1.0 937,203 + ABIE40_RS04780 0.29 -0.5 937,203 + ABIE40_RS04780 0.29 -0.2 937,203 + ABIE40_RS04780 0.29 -0.6 937,204 - ABIE40_RS04780 0.29 +0.6 937,204 - ABIE40_RS04780 0.29 -1.3 937,204 - ABIE40_RS04780 0.29 -0.6 937,204 - ABIE40_RS04780 0.29 -0.8 937,204 - ABIE40_RS04780 0.29 -0.4 937,227 + ABIE40_RS04780 0.32 -0.3 937,227 + ABIE40_RS04780 0.32 -1.0 937,227 + ABIE40_RS04780 0.32 -0.8 937,227 + ABIE40_RS04780 0.32 -0.3 937,227 + ABIE40_RS04780 0.32 +1.1 937,227 + ABIE40_RS04780 0.32 +0.0 937,227 + ABIE40_RS04780 0.32 -2.9 937,227 + ABIE40_RS04780 0.32 -0.1 937,228 - ABIE40_RS04780 0.33 -0.4 937,228 - ABIE40_RS04780 0.33 -1.1 937,228 - ABIE40_RS04780 0.33 -0.4 937,228 - ABIE40_RS04780 0.33 -0.4 937,228 - ABIE40_RS04780 0.33 +2.4 937,228 - ABIE40_RS04780 0.33 +0.8 937,228 - ABIE40_RS04780 0.33 -2.3 937,228 - ABIE40_RS04780 0.33 +0.8 937,228 - ABIE40_RS04780 0.33 -1.6 937,228 - ABIE40_RS04780 0.33 -0.1 937,450 - ABIE40_RS04780 0.68 -1.3 937,450 - ABIE40_RS04780 0.68 +1.7 937,450 - ABIE40_RS04780 0.68 -0.1 937,488 + ABIE40_RS04780 0.74 -0.1 937,489 - ABIE40_RS04780 0.74 -0.0
Or see this region's nucleotide sequence