Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03515 and ABIE40_RS03520 are separated by 151 nucleotides ABIE40_RS03520 and ABIE40_RS03525 are separated by 14 nucleotides
ABIE40_RS03515: ABIE40_RS03515 - glutamate--cysteine ligase, at 697,161 to 698,534
_RS03515
ABIE40_RS03520: ABIE40_RS03520 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 698,686 to 699,423
_RS03520
ABIE40_RS03525: ABIE40_RS03525 - inorganic phosphate transporter, at 699,438 to 700,937
_RS03525
Position (kb) 698
699
700 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 697.703 kb on + strand, within ABIE40_RS03515 at 697.703 kb on + strand, within ABIE40_RS03515 at 697.738 kb on + strand, within ABIE40_RS03515 at 697.738 kb on + strand, within ABIE40_RS03515 at 697.738 kb on + strand, within ABIE40_RS03515 at 697.738 kb on + strand, within ABIE40_RS03515 at 697.739 kb on - strand, within ABIE40_RS03515 at 698.008 kb on + strand, within ABIE40_RS03515 at 698.009 kb on - strand, within ABIE40_RS03515 at 698.048 kb on - strand, within ABIE40_RS03515 at 698.298 kb on - strand, within ABIE40_RS03515 at 698.298 kb on - strand, within ABIE40_RS03515 at 698.298 kb on - strand, within ABIE40_RS03515 at 698.380 kb on + strand, within ABIE40_RS03515 at 698.542 kb on + strand at 698.550 kb on - strand at 698.550 kb on - strand at 698.550 kb on - strand at 698.550 kb on - strand at 698.550 kb on - strand at 698.550 kb on - strand at 698.595 kb on + strand at 698.595 kb on + strand at 698.596 kb on - strand at 698.596 kb on - strand at 698.611 kb on + strand at 698.611 kb on + strand at 698.611 kb on + strand at 698.612 kb on - strand at 698.675 kb on + strand at 698.676 kb on - strand at 698.688 kb on - strand at 698.921 kb on + strand, within ABIE40_RS03520 at 698.921 kb on + strand, within ABIE40_RS03520 at 698.921 kb on + strand, within ABIE40_RS03520 at 698.921 kb on + strand, within ABIE40_RS03520 at 698.921 kb on + strand, within ABIE40_RS03520 at 698.922 kb on - strand, within ABIE40_RS03520 at 698.922 kb on - strand, within ABIE40_RS03520 at 698.922 kb on - strand, within ABIE40_RS03520 at 698.922 kb on - strand, within ABIE40_RS03520 at 698.922 kb on - strand, within ABIE40_RS03520 at 699.135 kb on - strand, within ABIE40_RS03520 at 699.135 kb on - strand, within ABIE40_RS03520 at 699.135 kb on - strand, within ABIE40_RS03520 at 699.170 kb on + strand, within ABIE40_RS03520 at 699.171 kb on - strand, within ABIE40_RS03520 at 699.171 kb on - strand, within ABIE40_RS03520 at 699.171 kb on - strand, within ABIE40_RS03520 at 699.312 kb on + strand, within ABIE40_RS03520 at 699.312 kb on + strand, within ABIE40_RS03520 at 699.313 kb on - strand, within ABIE40_RS03520 at 699.313 kb on - strand, within ABIE40_RS03520 at 699.313 kb on - strand, within ABIE40_RS03520 at 699.332 kb on + strand, within ABIE40_RS03520 at 699.332 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.338 kb on + strand, within ABIE40_RS03520 at 699.338 kb on + strand, within ABIE40_RS03520 at 699.338 kb on + strand, within ABIE40_RS03520 at 699.338 kb on + strand, within ABIE40_RS03520 at 699.339 kb on - strand, within ABIE40_RS03520 at 699.339 kb on - strand, within ABIE40_RS03520 at 699.339 kb on - strand, within ABIE40_RS03520 at 699.458 kb on + strand at 699.458 kb on + strand at 699.466 kb on + strand at 699.466 kb on + strand at 699.626 kb on + strand, within ABIE40_RS03525 at 699.626 kb on + strand, within ABIE40_RS03525 at 699.627 kb on - strand, within ABIE40_RS03525 at 699.627 kb on - strand, within ABIE40_RS03525 at 699.627 kb on - strand, within ABIE40_RS03525 at 699.627 kb on - strand, within ABIE40_RS03525 at 699.628 kb on + strand, within ABIE40_RS03525 at 699.628 kb on + strand, within ABIE40_RS03525 at 699.629 kb on - strand, within ABIE40_RS03525 at 699.629 kb on - strand, within ABIE40_RS03525 at 699.629 kb on - strand, within ABIE40_RS03525 at 699.658 kb on + strand, within ABIE40_RS03525 at 699.659 kb on - strand, within ABIE40_RS03525 at 699.659 kb on - strand, within ABIE40_RS03525 at 699.659 kb on - strand, within ABIE40_RS03525 at 699.704 kb on + strand, within ABIE40_RS03525 at 699.704 kb on + strand, within ABIE40_RS03525 at 699.704 kb on + strand, within ABIE40_RS03525 at 699.705 kb on - strand, within ABIE40_RS03525 at 699.863 kb on + strand, within ABIE40_RS03525 at 699.863 kb on + strand, within ABIE40_RS03525 at 700.192 kb on + strand, within ABIE40_RS03525 at 700.192 kb on + strand, within ABIE40_RS03525 at 700.192 kb on + strand, within ABIE40_RS03525 at 700.193 kb on - strand, within ABIE40_RS03525 at 700.193 kb on - strand, within ABIE40_RS03525 at 700.193 kb on - strand, within ABIE40_RS03525 at 700.199 kb on + strand, within ABIE40_RS03525 at 700.270 kb on + strand, within ABIE40_RS03525 at 700.270 kb on + strand, within ABIE40_RS03525 at 700.270 kb on + strand, within ABIE40_RS03525 at 700.270 kb on + strand, within ABIE40_RS03525 at 700.271 kb on - strand, within ABIE40_RS03525 at 700.271 kb on - strand, within ABIE40_RS03525
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 697,703 + ABIE40_RS03515 0.39 -1.6 697,703 + ABIE40_RS03515 0.39 -0.4 697,738 + ABIE40_RS03515 0.42 +1.2 697,738 + ABIE40_RS03515 0.42 +0.6 697,738 + ABIE40_RS03515 0.42 +1.6 697,738 + ABIE40_RS03515 0.42 +1.6 697,739 - ABIE40_RS03515 0.42 +1.4 698,008 + ABIE40_RS03515 0.62 -1.2 698,009 - ABIE40_RS03515 0.62 -1.4 698,048 - ABIE40_RS03515 0.65 +1.6 698,298 - ABIE40_RS03515 0.83 -1.6 698,298 - ABIE40_RS03515 0.83 -0.2 698,298 - ABIE40_RS03515 0.83 +1.6 698,380 + ABIE40_RS03515 0.89 -0.4 698,542 + +1.6 698,550 - -2.4 698,550 - +0.1 698,550 - +1.2 698,550 - +0.0 698,550 - +0.4 698,550 - +0.6 698,595 + -1.3 698,595 + -0.1 698,596 - -0.4 698,596 - +0.3 698,611 + +0.7 698,611 + +0.6 698,611 + -0.1 698,612 - +0.5 698,675 + -3.9 698,676 - -1.8 698,688 - -0.1 698,921 + ABIE40_RS03520 0.32 -0.6 698,921 + ABIE40_RS03520 0.32 +1.3 698,921 + ABIE40_RS03520 0.32 +0.3 698,921 + ABIE40_RS03520 0.32 -0.4 698,921 + ABIE40_RS03520 0.32 +0.2 698,922 - ABIE40_RS03520 0.32 +1.3 698,922 - ABIE40_RS03520 0.32 -0.9 698,922 - ABIE40_RS03520 0.32 +0.8 698,922 - ABIE40_RS03520 0.32 +0.2 698,922 - ABIE40_RS03520 0.32 +0.2 699,135 - ABIE40_RS03520 0.61 +1.8 699,135 - ABIE40_RS03520 0.61 +0.7 699,135 - ABIE40_RS03520 0.61 -0.7 699,170 + ABIE40_RS03520 0.66 +0.4 699,171 - ABIE40_RS03520 0.66 +0.9 699,171 - ABIE40_RS03520 0.66 -0.5 699,171 - ABIE40_RS03520 0.66 +0.4 699,312 + ABIE40_RS03520 0.85 +0.2 699,312 + ABIE40_RS03520 0.85 +0.0 699,313 - ABIE40_RS03520 0.85 +0.7 699,313 - ABIE40_RS03520 0.85 +3.2 699,313 - ABIE40_RS03520 0.85 -0.6 699,332 + ABIE40_RS03520 0.88 -0.6 699,332 + ABIE40_RS03520 0.88 +0.2 699,336 + ABIE40_RS03520 0.88 -0.3 699,336 + ABIE40_RS03520 0.88 -2.8 699,336 + ABIE40_RS03520 0.88 +1.5 699,336 + ABIE40_RS03520 0.88 -0.3 699,336 + ABIE40_RS03520 0.88 +1.6 699,336 + ABIE40_RS03520 0.88 -0.4 699,336 + ABIE40_RS03520 0.88 +0.8 699,336 + ABIE40_RS03520 0.88 +0.3 699,337 - ABIE40_RS03520 0.88 -0.2 699,337 - ABIE40_RS03520 0.88 -0.4 699,337 - ABIE40_RS03520 0.88 -1.1 699,337 - ABIE40_RS03520 0.88 +0.2 699,337 - ABIE40_RS03520 0.88 -0.6 699,337 - ABIE40_RS03520 0.88 +0.0 699,337 - ABIE40_RS03520 0.88 +0.1 699,337 - ABIE40_RS03520 0.88 +0.0 699,337 - ABIE40_RS03520 0.88 -0.3 699,337 - ABIE40_RS03520 0.88 +0.1 699,337 - ABIE40_RS03520 0.88 +1.5 699,338 + ABIE40_RS03520 0.88 -0.9 699,338 + ABIE40_RS03520 0.88 -2.4 699,338 + ABIE40_RS03520 0.88 +0.3 699,338 + ABIE40_RS03520 0.88 -0.6 699,339 - ABIE40_RS03520 0.88 +1.3 699,339 - ABIE40_RS03520 0.88 +0.2 699,339 - ABIE40_RS03520 0.88 +1.0 699,458 + +0.0 699,458 + -1.0 699,466 + -0.8 699,466 + +1.2 699,626 + ABIE40_RS03525 0.13 -1.1 699,626 + ABIE40_RS03525 0.13 +0.9 699,627 - ABIE40_RS03525 0.13 -2.5 699,627 - ABIE40_RS03525 0.13 -0.4 699,627 - ABIE40_RS03525 0.13 +0.3 699,627 - ABIE40_RS03525 0.13 +1.1 699,628 + ABIE40_RS03525 0.13 -0.7 699,628 + ABIE40_RS03525 0.13 +0.4 699,629 - ABIE40_RS03525 0.13 +0.1 699,629 - ABIE40_RS03525 0.13 -0.1 699,629 - ABIE40_RS03525 0.13 -0.4 699,658 + ABIE40_RS03525 0.15 -3.0 699,659 - ABIE40_RS03525 0.15 -0.8 699,659 - ABIE40_RS03525 0.15 +1.1 699,659 - ABIE40_RS03525 0.15 -0.5 699,704 + ABIE40_RS03525 0.18 -0.2 699,704 + ABIE40_RS03525 0.18 -0.9 699,704 + ABIE40_RS03525 0.18 -1.6 699,705 - ABIE40_RS03525 0.18 -2.0 699,863 + ABIE40_RS03525 0.28 -1.9 699,863 + ABIE40_RS03525 0.28 -0.3 700,192 + ABIE40_RS03525 0.50 -1.7 700,192 + ABIE40_RS03525 0.50 -0.8 700,192 + ABIE40_RS03525 0.50 -0.8 700,193 - ABIE40_RS03525 0.50 -1.0 700,193 - ABIE40_RS03525 0.50 -0.7 700,193 - ABIE40_RS03525 0.50 -1.6 700,199 + ABIE40_RS03525 0.51 +1.2 700,270 + ABIE40_RS03525 0.55 -1.4 700,270 + ABIE40_RS03525 0.55 -0.0 700,270 + ABIE40_RS03525 0.55 +0.2 700,270 + ABIE40_RS03525 0.55 -1.5 700,271 - ABIE40_RS03525 0.56 -1.7 700,271 - ABIE40_RS03525 0.56 -0.7
Or see this region's nucleotide sequence