Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03475 and ABIE40_RS03480 are separated by 96 nucleotides ABIE40_RS03480 and ABIE40_RS03485 are separated by 108 nucleotides ABIE40_RS03485 and ABIE40_RS03490 are separated by 81 nucleotides
ABIE40_RS03475: ABIE40_RS03475 - LysR family transcriptional regulator, at 690,602 to 691,516
_RS03475
ABIE40_RS03480: ABIE40_RS03480 - SDR family oxidoreductase, at 691,613 to 692,368
_RS03480
ABIE40_RS03485: ABIE40_RS03485 - MAPEG family protein, at 692,477 to 692,896
_RS03485
ABIE40_RS03490: ABIE40_RS03490 - dienelactone hydrolase family protein, at 692,978 to 693,853
_RS03490
Position (kb) 692
693 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 691.578 kb on + strand at 691.578 kb on + strand at 691.578 kb on + strand at 691.578 kb on + strand at 691.578 kb on + strand at 691.578 kb on + strand at 691.579 kb on - strand at 691.579 kb on - strand at 691.826 kb on + strand, within ABIE40_RS03480 at 691.925 kb on + strand, within ABIE40_RS03480 at 691.925 kb on + strand, within ABIE40_RS03480 at 691.926 kb on - strand, within ABIE40_RS03480 at 691.926 kb on - strand, within ABIE40_RS03480 at 691.926 kb on - strand, within ABIE40_RS03480 at 691.926 kb on - strand, within ABIE40_RS03480 at 691.926 kb on - strand, within ABIE40_RS03480 at 691.926 kb on - strand, within ABIE40_RS03480 at 691.933 kb on + strand, within ABIE40_RS03480 at 691.933 kb on + strand, within ABIE40_RS03480 at 691.933 kb on + strand, within ABIE40_RS03480 at 691.934 kb on - strand, within ABIE40_RS03480 at 691.934 kb on - strand, within ABIE40_RS03480 at 691.934 kb on - strand, within ABIE40_RS03480 at 691.966 kb on + strand, within ABIE40_RS03480 at 691.967 kb on - strand, within ABIE40_RS03480 at 692.063 kb on + strand, within ABIE40_RS03480 at 692.063 kb on + strand, within ABIE40_RS03480 at 692.064 kb on - strand, within ABIE40_RS03480 at 692.064 kb on - strand, within ABIE40_RS03480 at 692.064 kb on - strand, within ABIE40_RS03480 at 692.119 kb on - strand, within ABIE40_RS03480 at 692.228 kb on + strand, within ABIE40_RS03480 at 692.228 kb on + strand, within ABIE40_RS03480 at 692.434 kb on - strand at 692.537 kb on + strand, within ABIE40_RS03485 at 692.537 kb on + strand, within ABIE40_RS03485 at 692.538 kb on - strand, within ABIE40_RS03485 at 692.684 kb on + strand, within ABIE40_RS03485 at 692.684 kb on + strand, within ABIE40_RS03485 at 692.684 kb on + strand, within ABIE40_RS03485 at 692.684 kb on + strand, within ABIE40_RS03485 at 692.684 kb on + strand, within ABIE40_RS03485 at 692.684 kb on + strand, within ABIE40_RS03485 at 692.685 kb on - strand, within ABIE40_RS03485 at 692.685 kb on - strand, within ABIE40_RS03485 at 692.685 kb on - strand, within ABIE40_RS03485 at 692.685 kb on - strand, within ABIE40_RS03485 at 692.685 kb on - strand, within ABIE40_RS03485 at 692.685 kb on - strand, within ABIE40_RS03485 at 692.685 kb on - strand, within ABIE40_RS03485 at 692.685 kb on - strand, within ABIE40_RS03485 at 692.685 kb on - strand, within ABIE40_RS03485 at 692.705 kb on + strand, within ABIE40_RS03485 at 692.705 kb on + strand, within ABIE40_RS03485 at 692.705 kb on + strand, within ABIE40_RS03485 at 692.705 kb on + strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.706 kb on - strand, within ABIE40_RS03485 at 692.707 kb on + strand, within ABIE40_RS03485 at 692.707 kb on + strand, within ABIE40_RS03485 at 692.707 kb on + strand, within ABIE40_RS03485 at 692.707 kb on + strand, within ABIE40_RS03485 at 692.708 kb on - strand, within ABIE40_RS03485 at 692.708 kb on - strand, within ABIE40_RS03485 at 692.769 kb on - strand, within ABIE40_RS03485 at 692.769 kb on - strand, within ABIE40_RS03485 at 692.780 kb on + strand, within ABIE40_RS03485 at 692.780 kb on + strand, within ABIE40_RS03485 at 692.780 kb on + strand, within ABIE40_RS03485 at 692.780 kb on + strand, within ABIE40_RS03485 at 692.780 kb on + strand, within ABIE40_RS03485 at 692.781 kb on - strand, within ABIE40_RS03485 at 692.781 kb on - strand, within ABIE40_RS03485 at 692.931 kb on + strand at 692.931 kb on + strand at 692.931 kb on + strand at 692.931 kb on + strand at 692.931 kb on + strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.932 kb on - strand at 693.017 kb on + strand at 693.018 kb on - strand at 693.026 kb on + strand at 693.027 kb on - strand at 693.027 kb on - strand at 693.027 kb on - strand at 693.027 kb on - strand at 693.148 kb on + strand, within ABIE40_RS03490 at 693.148 kb on + strand, within ABIE40_RS03490 at 693.148 kb on + strand, within ABIE40_RS03490 at 693.149 kb on - strand, within ABIE40_RS03490 at 693.191 kb on + strand, within ABIE40_RS03490 at 693.192 kb on - strand, within ABIE40_RS03490 at 693.221 kb on + strand, within ABIE40_RS03490 at 693.222 kb on - strand, within ABIE40_RS03490 at 693.222 kb on - strand, within ABIE40_RS03490 at 693.302 kb on - strand, within ABIE40_RS03490 at 693.467 kb on + strand, within ABIE40_RS03490 at 693.468 kb on - strand, within ABIE40_RS03490 at 693.468 kb on - strand, within ABIE40_RS03490 at 693.588 kb on - strand, within ABIE40_RS03490 at 693.647 kb on + strand, within ABIE40_RS03490 at 693.648 kb on - strand, within ABIE40_RS03490 at 693.689 kb on + strand, within ABIE40_RS03490 at 693.690 kb on - strand, within ABIE40_RS03490 at 693.737 kb on + strand, within ABIE40_RS03490 at 693.737 kb on + strand, within ABIE40_RS03490 at 693.738 kb on - strand, within ABIE40_RS03490 at 693.769 kb on + strand at 693.769 kb on + strand at 693.785 kb on + strand at 693.786 kb on - strand at 693.883 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 691,578 + +0.2 691,578 + +1.1 691,578 + +0.6 691,578 + +1.1 691,578 + +1.6 691,578 + -0.0 691,579 - +2.6 691,579 - -0.6 691,826 + ABIE40_RS03480 0.28 +0.0 691,925 + ABIE40_RS03480 0.41 +0.4 691,925 + ABIE40_RS03480 0.41 +0.6 691,926 - ABIE40_RS03480 0.41 -0.7 691,926 - ABIE40_RS03480 0.41 -0.8 691,926 - ABIE40_RS03480 0.41 +0.2 691,926 - ABIE40_RS03480 0.41 -1.0 691,926 - ABIE40_RS03480 0.41 -1.2 691,926 - ABIE40_RS03480 0.41 +0.2 691,933 + ABIE40_RS03480 0.42 -0.4 691,933 + ABIE40_RS03480 0.42 +1.3 691,933 + ABIE40_RS03480 0.42 -0.1 691,934 - ABIE40_RS03480 0.42 +0.2 691,934 - ABIE40_RS03480 0.42 -1.8 691,934 - ABIE40_RS03480 0.42 -0.6 691,966 + ABIE40_RS03480 0.47 -1.5 691,967 - ABIE40_RS03480 0.47 +2.7 692,063 + ABIE40_RS03480 0.60 +0.1 692,063 + ABIE40_RS03480 0.60 +0.1 692,064 - ABIE40_RS03480 0.60 -0.0 692,064 - ABIE40_RS03480 0.60 +0.2 692,064 - ABIE40_RS03480 0.60 +0.4 692,119 - ABIE40_RS03480 0.67 +1.2 692,228 + ABIE40_RS03480 0.81 -0.8 692,228 + ABIE40_RS03480 0.81 -0.8 692,434 - -2.3 692,537 + ABIE40_RS03485 0.14 -3.1 692,537 + ABIE40_RS03485 0.14 -3.3 692,538 - ABIE40_RS03485 0.15 -1.9 692,684 + ABIE40_RS03485 0.49 -3.9 692,684 + ABIE40_RS03485 0.49 -1.3 692,684 + ABIE40_RS03485 0.49 -2.8 692,684 + ABIE40_RS03485 0.49 -2.2 692,684 + ABIE40_RS03485 0.49 -4.7 692,684 + ABIE40_RS03485 0.49 -3.9 692,685 - ABIE40_RS03485 0.50 -3.5 692,685 - ABIE40_RS03485 0.50 -1.0 692,685 - ABIE40_RS03485 0.50 -1.6 692,685 - ABIE40_RS03485 0.50 -1.8 692,685 - ABIE40_RS03485 0.50 -4.8 692,685 - ABIE40_RS03485 0.50 -4.6 692,685 - ABIE40_RS03485 0.50 -2.2 692,685 - ABIE40_RS03485 0.50 +1.6 692,685 - ABIE40_RS03485 0.50 +0.6 692,705 + ABIE40_RS03485 0.54 -2.8 692,705 + ABIE40_RS03485 0.54 -1.6 692,705 + ABIE40_RS03485 0.54 +0.6 692,705 + ABIE40_RS03485 0.54 -3.3 692,706 - ABIE40_RS03485 0.55 -0.8 692,706 - ABIE40_RS03485 0.55 -1.4 692,706 - ABIE40_RS03485 0.55 -2.9 692,706 - ABIE40_RS03485 0.55 -4.3 692,706 - ABIE40_RS03485 0.55 -1.6 692,706 - ABIE40_RS03485 0.55 -0.4 692,706 - ABIE40_RS03485 0.55 -0.8 692,706 - ABIE40_RS03485 0.55 -2.3 692,706 - ABIE40_RS03485 0.55 -0.8 692,706 - ABIE40_RS03485 0.55 -1.9 692,706 - ABIE40_RS03485 0.55 -1.2 692,706 - ABIE40_RS03485 0.55 -1.8 692,707 + ABIE40_RS03485 0.55 -0.0 692,707 + ABIE40_RS03485 0.55 -3.3 692,707 + ABIE40_RS03485 0.55 -3.6 692,707 + ABIE40_RS03485 0.55 -3.0 692,708 - ABIE40_RS03485 0.55 +1.2 692,708 - ABIE40_RS03485 0.55 -2.8 692,769 - ABIE40_RS03485 0.70 -4.7 692,769 - ABIE40_RS03485 0.70 -2.9 692,780 + ABIE40_RS03485 0.72 -2.2 692,780 + ABIE40_RS03485 0.72 -1.1 692,780 + ABIE40_RS03485 0.72 -2.4 692,780 + ABIE40_RS03485 0.72 -3.2 692,780 + ABIE40_RS03485 0.72 +2.2 692,781 - ABIE40_RS03485 0.72 -2.5 692,781 - ABIE40_RS03485 0.72 -2.0 692,931 + +1.3 692,931 + +0.0 692,931 + -0.8 692,931 + -0.6 692,931 + -1.2 692,932 - +0.4 692,932 - +0.2 692,932 - +0.5 692,932 - +0.8 693,017 + +0.4 693,018 - +0.0 693,026 + -1.2 693,027 - -0.6 693,027 - -0.0 693,027 - -0.3 693,027 - -2.0 693,148 + ABIE40_RS03490 0.19 +0.6 693,148 + ABIE40_RS03490 0.19 -1.3 693,148 + ABIE40_RS03490 0.19 -0.3 693,149 - ABIE40_RS03490 0.20 +0.6 693,191 + ABIE40_RS03490 0.24 +0.3 693,192 - ABIE40_RS03490 0.24 -0.7 693,221 + ABIE40_RS03490 0.28 -0.5 693,222 - ABIE40_RS03490 0.28 +1.2 693,222 - ABIE40_RS03490 0.28 +0.2 693,302 - ABIE40_RS03490 0.37 +0.3 693,467 + ABIE40_RS03490 0.56 +1.0 693,468 - ABIE40_RS03490 0.56 -0.6 693,468 - ABIE40_RS03490 0.56 +0.4 693,588 - ABIE40_RS03490 0.70 +0.0 693,647 + ABIE40_RS03490 0.76 +1.2 693,648 - ABIE40_RS03490 0.76 -2.3 693,689 + ABIE40_RS03490 0.81 -0.5 693,690 - ABIE40_RS03490 0.81 -0.3 693,737 + ABIE40_RS03490 0.87 +2.1 693,737 + ABIE40_RS03490 0.87 -1.2 693,738 - ABIE40_RS03490 0.87 +0.9 693,769 + +2.2 693,769 + -0.6 693,785 + -1.2 693,786 - -0.5 693,883 + +0.4
Or see this region's nucleotide sequence