Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02280

Experiment: Carnitine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02275 and ABIE40_RS02280 are separated by 238 nucleotidesABIE40_RS02280 and ABIE40_RS02285 are separated by 199 nucleotides ABIE40_RS02275: ABIE40_RS02275 - polyphosphate kinase 2, at 449,557 to 450,438 _RS02275 ABIE40_RS02280: ABIE40_RS02280 - phosphate regulon sensor histidine kinase PhoR, at 450,677 to 451,897 _RS02280 ABIE40_RS02285: ABIE40_RS02285 - substrate-binding domain-containing protein, at 452,097 to 453,131 _RS02285 Position (kb) 450 451 452Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 449.762 kb on + strand, within ABIE40_RS02275at 449.763 kb on - strand, within ABIE40_RS02275at 449.763 kb on - strand, within ABIE40_RS02275at 449.803 kb on + strand, within ABIE40_RS02275at 449.803 kb on + strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.804 kb on - strand, within ABIE40_RS02275at 449.879 kb on + strand, within ABIE40_RS02275at 449.880 kb on - strand, within ABIE40_RS02275at 449.880 kb on - strand, within ABIE40_RS02275at 449.880 kb on - strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.894 kb on + strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.895 kb on - strand, within ABIE40_RS02275at 449.954 kb on + strand, within ABIE40_RS02275at 449.955 kb on - strand, within ABIE40_RS02275at 450.003 kb on + strand, within ABIE40_RS02275at 450.006 kb on - strand, within ABIE40_RS02275at 450.006 kb on - strand, within ABIE40_RS02275at 450.057 kb on + strand, within ABIE40_RS02275at 450.058 kb on - strand, within ABIE40_RS02275at 450.058 kb on - strand, within ABIE40_RS02275at 450.058 kb on - strand, within ABIE40_RS02275at 450.059 kb on + strand, within ABIE40_RS02275at 450.059 kb on + strand, within ABIE40_RS02275at 450.060 kb on - strand, within ABIE40_RS02275at 450.060 kb on - strand, within ABIE40_RS02275at 450.060 kb on - strand, within ABIE40_RS02275at 450.071 kb on + strand, within ABIE40_RS02275at 450.071 kb on + strand, within ABIE40_RS02275at 450.071 kb on + strand, within ABIE40_RS02275at 450.071 kb on + strand, within ABIE40_RS02275at 450.072 kb on - strand, within ABIE40_RS02275at 450.281 kb on + strand, within ABIE40_RS02275at 450.281 kb on + strand, within ABIE40_RS02275at 450.281 kb on + strand, within ABIE40_RS02275at 450.281 kb on + strand, within ABIE40_RS02275at 450.282 kb on - strand, within ABIE40_RS02275at 450.308 kb on + strand, within ABIE40_RS02275at 450.400 kb on - strandat 450.478 kb on + strandat 450.520 kb on + strandat 450.520 kb on + strandat 450.520 kb on + strandat 450.520 kb on + strandat 450.521 kb on - strandat 450.521 kb on - strandat 450.521 kb on - strandat 450.521 kb on - strandat 450.768 kb on + strandat 450.768 kb on + strandat 450.769 kb on - strandat 450.825 kb on + strand, within ABIE40_RS02280at 450.826 kb on - strand, within ABIE40_RS02280at 451.121 kb on + strand, within ABIE40_RS02280at 451.121 kb on + strand, within ABIE40_RS02280at 451.121 kb on + strand, within ABIE40_RS02280at 451.121 kb on + strand, within ABIE40_RS02280at 451.121 kb on + strand, within ABIE40_RS02280at 451.121 kb on + strand, within ABIE40_RS02280at 451.121 kb on + strand, within ABIE40_RS02280at 451.121 kb on + strand, within ABIE40_RS02280at 451.121 kb on + strand, within ABIE40_RS02280at 451.121 kb on + strand, within ABIE40_RS02280at 451.122 kb on - strand, within ABIE40_RS02280at 451.122 kb on - strand, within ABIE40_RS02280at 451.122 kb on - strand, within ABIE40_RS02280at 451.122 kb on - strand, within ABIE40_RS02280at 451.122 kb on - strand, within ABIE40_RS02280at 451.122 kb on - strand, within ABIE40_RS02280at 451.122 kb on - strand, within ABIE40_RS02280at 451.122 kb on - strand, within ABIE40_RS02280at 451.123 kb on + strand, within ABIE40_RS02280at 451.146 kb on - strand, within ABIE40_RS02280at 451.198 kb on + strand, within ABIE40_RS02280at 451.198 kb on + strand, within ABIE40_RS02280at 451.198 kb on + strand, within ABIE40_RS02280at 451.199 kb on - strand, within ABIE40_RS02280at 451.622 kb on + strand, within ABIE40_RS02280at 451.738 kb on + strand, within ABIE40_RS02280at 451.738 kb on + strand, within ABIE40_RS02280at 451.739 kb on - strand, within ABIE40_RS02280at 451.751 kb on + strand, within ABIE40_RS02280at 451.763 kb on - strand, within ABIE40_RS02280at 451.820 kb on - strandat 451.820 kb on - strandat 451.820 kb on - strandat 451.852 kb on + strandat 451.883 kb on - strandat 451.900 kb on + strandat 451.900 kb on + strandat 451.901 kb on - strandat 451.901 kb on - strandat 451.901 kb on - strandat 451.939 kb on + strandat 451.988 kb on + strandat 451.988 kb on + strandat 452.011 kb on + strandat 452.108 kb on + strandat 452.208 kb on + strand, within ABIE40_RS02285at 452.427 kb on + strand, within ABIE40_RS02285at 452.428 kb on - strand, within ABIE40_RS02285at 452.475 kb on + strand, within ABIE40_RS02285at 452.475 kb on + strand, within ABIE40_RS02285at 452.476 kb on - strand, within ABIE40_RS02285at 452.493 kb on + strand, within ABIE40_RS02285at 452.493 kb on + strand, within ABIE40_RS02285at 452.493 kb on + strand, within ABIE40_RS02285at 452.493 kb on + strand, within ABIE40_RS02285at 452.493 kb on + strand, within ABIE40_RS02285at 452.493 kb on + strand, within ABIE40_RS02285at 452.494 kb on - strand, within ABIE40_RS02285at 452.494 kb on - strand, within ABIE40_RS02285at 452.494 kb on - strand, within ABIE40_RS02285at 452.547 kb on + strand, within ABIE40_RS02285at 452.548 kb on - strand, within ABIE40_RS02285at 452.601 kb on + strand, within ABIE40_RS02285at 452.601 kb on + strand, within ABIE40_RS02285at 452.601 kb on + strand, within ABIE40_RS02285at 452.601 kb on + strand, within ABIE40_RS02285at 452.601 kb on + strand, within ABIE40_RS02285at 452.601 kb on + strand, within ABIE40_RS02285at 452.602 kb on - strand, within ABIE40_RS02285at 452.602 kb on - strand, within ABIE40_RS02285at 452.847 kb on + strand, within ABIE40_RS02285at 452.847 kb on + strand, within ABIE40_RS02285

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
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449,762 + ABIE40_RS02275 0.23 +1.5
449,763 - ABIE40_RS02275 0.23 -0.2
449,763 - ABIE40_RS02275 0.23 -0.2
449,803 + ABIE40_RS02275 0.28 -1.8
449,803 + ABIE40_RS02275 0.28 -1.7
449,804 - ABIE40_RS02275 0.28 -0.7
449,804 - ABIE40_RS02275 0.28 -2.0
449,804 - ABIE40_RS02275 0.28 -0.2
449,804 - ABIE40_RS02275 0.28 -1.1
449,804 - ABIE40_RS02275 0.28 -1.1
449,804 - ABIE40_RS02275 0.28 -1.5
449,804 - ABIE40_RS02275 0.28 +0.0
449,879 + ABIE40_RS02275 0.37 -2.9
449,880 - ABIE40_RS02275 0.37 -0.5
449,880 - ABIE40_RS02275 0.37 +0.6
449,880 - ABIE40_RS02275 0.37 -0.2
449,894 + ABIE40_RS02275 0.38 +0.3
449,894 + ABIE40_RS02275 0.38 -0.0
449,894 + ABIE40_RS02275 0.38 -1.2
449,894 + ABIE40_RS02275 0.38 +1.8
449,894 + ABIE40_RS02275 0.38 -0.9
449,894 + ABIE40_RS02275 0.38 -0.6
449,895 - ABIE40_RS02275 0.38 -0.2
449,895 - ABIE40_RS02275 0.38 +1.1
449,895 - ABIE40_RS02275 0.38 +1.8
449,895 - ABIE40_RS02275 0.38 -0.1
449,895 - ABIE40_RS02275 0.38 -2.3
449,895 - ABIE40_RS02275 0.38 +0.4
449,954 + ABIE40_RS02275 0.45 -0.0
449,955 - ABIE40_RS02275 0.45 -0.2
450,003 + ABIE40_RS02275 0.51 -0.9
450,006 - ABIE40_RS02275 0.51 +0.1
450,006 - ABIE40_RS02275 0.51 +0.7
450,057 + ABIE40_RS02275 0.57 -1.1
450,058 - ABIE40_RS02275 0.57 -0.8
450,058 - ABIE40_RS02275 0.57 +0.7
450,058 - ABIE40_RS02275 0.57 -1.8
450,059 + ABIE40_RS02275 0.57 -1.5
450,059 + ABIE40_RS02275 0.57 +1.2
450,060 - ABIE40_RS02275 0.57 +3.8
450,060 - ABIE40_RS02275 0.57 +0.7
450,060 - ABIE40_RS02275 0.57 -0.1
450,071 + ABIE40_RS02275 0.58 +1.0
450,071 + ABIE40_RS02275 0.58 +1.6
450,071 + ABIE40_RS02275 0.58 -0.2
450,071 + ABIE40_RS02275 0.58 +0.6
450,072 - ABIE40_RS02275 0.58 -0.4
450,281 + ABIE40_RS02275 0.82 +1.5
450,281 + ABIE40_RS02275 0.82 +1.3
450,281 + ABIE40_RS02275 0.82 +0.8
450,281 + ABIE40_RS02275 0.82 -0.9
450,282 - ABIE40_RS02275 0.82 -2.5
450,308 + ABIE40_RS02275 0.85 -0.2
450,400 - -0.3
450,478 + +0.4
450,520 + +0.6
450,520 + +0.5
450,520 + -0.4
450,520 + +1.7
450,521 - -0.4
450,521 - +0.2
450,521 - -0.9
450,521 - -0.5
450,768 + -2.7
450,768 + -0.4
450,769 - -0.2
450,825 + ABIE40_RS02280 0.12 +0.0
450,826 - ABIE40_RS02280 0.12 -0.5
451,121 + ABIE40_RS02280 0.36 +1.2
451,121 + ABIE40_RS02280 0.36 +0.5
451,121 + ABIE40_RS02280 0.36 -0.5
451,121 + ABIE40_RS02280 0.36 -0.8
451,121 + ABIE40_RS02280 0.36 +0.5
451,121 + ABIE40_RS02280 0.36 -1.3
451,121 + ABIE40_RS02280 0.36 -0.2
451,121 + ABIE40_RS02280 0.36 -0.8
451,121 + ABIE40_RS02280 0.36 -0.0
451,121 + ABIE40_RS02280 0.36 +0.1
451,122 - ABIE40_RS02280 0.36 +0.4
451,122 - ABIE40_RS02280 0.36 +0.4
451,122 - ABIE40_RS02280 0.36 +0.1
451,122 - ABIE40_RS02280 0.36 -2.5
451,122 - ABIE40_RS02280 0.36 -0.1
451,122 - ABIE40_RS02280 0.36 +0.0
451,122 - ABIE40_RS02280 0.36 +0.7
451,122 - ABIE40_RS02280 0.36 +0.5
451,123 + ABIE40_RS02280 0.37 -0.7
451,146 - ABIE40_RS02280 0.38 +0.1
451,198 + ABIE40_RS02280 0.43 -0.1
451,198 + ABIE40_RS02280 0.43 -0.2
451,198 + ABIE40_RS02280 0.43 +0.7
451,199 - ABIE40_RS02280 0.43 -2.7
451,622 + ABIE40_RS02280 0.77 -0.1
451,738 + ABIE40_RS02280 0.87 -1.9
451,738 + ABIE40_RS02280 0.87 -1.4
451,739 - ABIE40_RS02280 0.87 -1.5
451,751 + ABIE40_RS02280 0.88 -0.3
451,763 - ABIE40_RS02280 0.89 -0.5
451,820 - +2.2
451,820 - -1.0
451,820 - +0.6
451,852 + -3.0
451,883 - -0.5
451,900 + +0.7
451,900 + +0.8
451,901 - -0.7
451,901 - -0.5
451,901 - +0.1
451,939 + -0.1
451,988 + -0.5
451,988 + -2.6
452,011 + +0.3
452,108 + -0.6
452,208 + ABIE40_RS02285 0.11 +0.6
452,427 + ABIE40_RS02285 0.32 -2.3
452,428 - ABIE40_RS02285 0.32 -0.6
452,475 + ABIE40_RS02285 0.37 +0.8
452,475 + ABIE40_RS02285 0.37 -1.2
452,476 - ABIE40_RS02285 0.37 +0.3
452,493 + ABIE40_RS02285 0.38 -1.0
452,493 + ABIE40_RS02285 0.38 -1.6
452,493 + ABIE40_RS02285 0.38 -1.0
452,493 + ABIE40_RS02285 0.38 -2.4
452,493 + ABIE40_RS02285 0.38 +0.2
452,493 + ABIE40_RS02285 0.38 -0.2
452,494 - ABIE40_RS02285 0.38 -0.7
452,494 - ABIE40_RS02285 0.38 -1.6
452,494 - ABIE40_RS02285 0.38 -0.1
452,547 + ABIE40_RS02285 0.43 +0.0
452,548 - ABIE40_RS02285 0.44 +0.1
452,601 + ABIE40_RS02285 0.49 -2.2
452,601 + ABIE40_RS02285 0.49 -0.8
452,601 + ABIE40_RS02285 0.49 -0.3
452,601 + ABIE40_RS02285 0.49 +0.1
452,601 + ABIE40_RS02285 0.49 -0.6
452,601 + ABIE40_RS02285 0.49 -0.4
452,602 - ABIE40_RS02285 0.49 +2.0
452,602 - ABIE40_RS02285 0.49 -1.6
452,847 + ABIE40_RS02285 0.72 +1.0
452,847 + ABIE40_RS02285 0.72 +0.2

Or see this region's nucleotide sequence