Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01960 and ABIE40_RS01965 overlap by 4 nucleotides ABIE40_RS01965 and ABIE40_RS01970 are separated by 7 nucleotides ABIE40_RS01970 and ABIE40_RS01975 are separated by 144 nucleotides ABIE40_RS01975 and ABIE40_RS01980 overlap by 4 nucleotides
ABIE40_RS01960: ABIE40_RS01960 - trifunctional transcriptional activator/DNA repair protein Ada/methylated-DNA--[protein]-cysteine S-methyltransferase, at 386,296 to 387,375
_RS01960
ABIE40_RS01965: ABIE40_RS01965 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 387,372 to 388,145
_RS01965
ABIE40_RS01970: ABIE40_RS01970 - acetylglutamate kinase, at 388,153 to 389,040
_RS01970
ABIE40_RS01975: ABIE40_RS01975 - sigma-70 family RNA polymerase sigma factor, at 389,185 to 389,724
_RS01975
ABIE40_RS01980: ABIE40_RS01980 - anti-sigma factor, at 389,721 to 390,440
_RS01980
Position (kb) 388
389
390 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 387.155 kb on - strand, within ABIE40_RS01960 at 387.438 kb on + strand at 387.438 kb on + strand at 387.438 kb on + strand at 387.443 kb on + strand at 387.443 kb on + strand at 387.444 kb on - strand at 387.444 kb on - strand at 387.444 kb on - strand at 387.444 kb on - strand at 387.444 kb on - strand at 387.534 kb on + strand, within ABIE40_RS01965 at 387.534 kb on + strand, within ABIE40_RS01965 at 387.534 kb on + strand, within ABIE40_RS01965 at 387.535 kb on - strand, within ABIE40_RS01965 at 387.535 kb on - strand, within ABIE40_RS01965 at 387.535 kb on - strand, within ABIE40_RS01965 at 387.889 kb on + strand, within ABIE40_RS01965 at 387.899 kb on + strand, within ABIE40_RS01965 at 387.906 kb on + strand, within ABIE40_RS01965 at 387.907 kb on - strand, within ABIE40_RS01965 at 387.907 kb on - strand, within ABIE40_RS01965 at 387.937 kb on + strand, within ABIE40_RS01965 at 387.938 kb on - strand, within ABIE40_RS01965 at 387.938 kb on - strand, within ABIE40_RS01965 at 388.007 kb on + strand, within ABIE40_RS01965 at 388.008 kb on - strand, within ABIE40_RS01965 at 388.008 kb on - strand, within ABIE40_RS01965 at 388.061 kb on + strand, within ABIE40_RS01965 at 388.068 kb on + strand at 388.068 kb on + strand at 388.069 kb on - strand at 388.083 kb on + strand at 388.128 kb on + strand at 388.128 kb on + strand at 388.450 kb on - strand, within ABIE40_RS01970 at 388.466 kb on + strand, within ABIE40_RS01970 at 388.466 kb on + strand, within ABIE40_RS01970 at 388.467 kb on - strand, within ABIE40_RS01970 at 388.467 kb on - strand, within ABIE40_RS01970 at 388.947 kb on - strand, within ABIE40_RS01970 at 388.985 kb on + strand at 388.985 kb on + strand at 388.985 kb on + strand at 388.985 kb on + strand at 388.985 kb on + strand at 388.985 kb on + strand at 388.986 kb on - strand at 388.986 kb on - strand at 388.986 kb on - strand at 388.986 kb on - strand at 389.073 kb on + strand at 389.073 kb on + strand at 389.074 kb on - strand at 389.074 kb on - strand at 389.098 kb on + strand at 389.099 kb on - strand at 389.099 kb on - strand at 389.099 kb on - strand at 389.113 kb on + strand at 389.113 kb on + strand at 389.113 kb on + strand at 389.114 kb on - strand at 389.114 kb on - strand at 389.152 kb on + strand at 389.152 kb on + strand at 389.156 kb on + strand at 389.156 kb on + strand at 389.157 kb on - strand at 389.298 kb on + strand, within ABIE40_RS01975 at 389.298 kb on + strand, within ABIE40_RS01975 at 389.298 kb on + strand, within ABIE40_RS01975 at 389.299 kb on - strand, within ABIE40_RS01975 at 389.299 kb on - strand, within ABIE40_RS01975 at 389.344 kb on + strand, within ABIE40_RS01975 at 389.344 kb on + strand, within ABIE40_RS01975 at 389.344 kb on + strand, within ABIE40_RS01975 at 389.344 kb on + strand, within ABIE40_RS01975 at 389.344 kb on + strand, within ABIE40_RS01975 at 389.344 kb on + strand, within ABIE40_RS01975 at 389.344 kb on + strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.345 kb on - strand, within ABIE40_RS01975 at 389.485 kb on + strand, within ABIE40_RS01975 at 389.486 kb on - strand, within ABIE40_RS01975 at 389.486 kb on - strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.526 kb on + strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.527 kb on - strand, within ABIE40_RS01975 at 389.599 kb on - strand, within ABIE40_RS01975 at 389.609 kb on - strand, within ABIE40_RS01975 at 389.609 kb on - strand, within ABIE40_RS01975 at 389.609 kb on - strand, within ABIE40_RS01975 at 389.609 kb on - strand, within ABIE40_RS01975 at 389.626 kb on + strand, within ABIE40_RS01975 at 389.626 kb on + strand, within ABIE40_RS01975 at 389.781 kb on + strand at 389.781 kb on + strand at 389.781 kb on + strand at 389.781 kb on + strand at 389.782 kb on - strand at 389.782 kb on - strand at 389.803 kb on - strand, within ABIE40_RS01980 at 389.803 kb on - strand, within ABIE40_RS01980 at 389.904 kb on + strand, within ABIE40_RS01980 at 389.904 kb on + strand, within ABIE40_RS01980 at 389.904 kb on + strand, within ABIE40_RS01980 at 389.905 kb on - strand, within ABIE40_RS01980 at 389.905 kb on - strand, within ABIE40_RS01980 at 389.905 kb on - strand, within ABIE40_RS01980 at 389.905 kb on - strand, within ABIE40_RS01980 at 389.905 kb on - strand, within ABIE40_RS01980
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 387,155 - ABIE40_RS01960 0.80 +1.4 387,438 + -0.5 387,438 + -3.0 387,438 + -0.2 387,443 + +0.2 387,443 + -0.7 387,444 - -1.0 387,444 - +0.9 387,444 - +0.3 387,444 - +0.0 387,444 - -0.4 387,534 + ABIE40_RS01965 0.21 -1.0 387,534 + ABIE40_RS01965 0.21 -0.4 387,534 + ABIE40_RS01965 0.21 -0.5 387,535 - ABIE40_RS01965 0.21 +0.1 387,535 - ABIE40_RS01965 0.21 +0.2 387,535 - ABIE40_RS01965 0.21 +0.5 387,889 + ABIE40_RS01965 0.67 +1.1 387,899 + ABIE40_RS01965 0.68 +0.2 387,906 + ABIE40_RS01965 0.69 +0.0 387,907 - ABIE40_RS01965 0.69 +0.4 387,907 - ABIE40_RS01965 0.69 +0.2 387,937 + ABIE40_RS01965 0.73 +1.2 387,938 - ABIE40_RS01965 0.73 -0.5 387,938 - ABIE40_RS01965 0.73 +0.1 388,007 + ABIE40_RS01965 0.82 -1.4 388,008 - ABIE40_RS01965 0.82 -0.5 388,008 - ABIE40_RS01965 0.82 +2.1 388,061 + ABIE40_RS01965 0.89 -2.1 388,068 + -0.1 388,068 + -2.4 388,069 - -0.0 388,083 + +0.2 388,128 + +0.6 388,128 + +0.1 388,450 - ABIE40_RS01970 0.33 -2.4 388,466 + ABIE40_RS01970 0.35 -1.5 388,466 + ABIE40_RS01970 0.35 -0.8 388,467 - ABIE40_RS01970 0.35 -3.4 388,467 - ABIE40_RS01970 0.35 -2.4 388,947 - ABIE40_RS01970 0.89 -3.4 388,985 + -2.7 388,985 + -3.1 388,985 + -3.9 388,985 + -2.4 388,985 + -0.8 388,985 + -3.5 388,986 - -1.7 388,986 - -0.2 388,986 - -2.7 388,986 - -3.0 389,073 + -4.1 389,073 + -4.4 389,074 - +0.8 389,074 - -0.7 389,098 + -1.2 389,099 - -0.4 389,099 - +0.6 389,099 - +1.2 389,113 + +0.5 389,113 + -0.5 389,113 + -0.2 389,114 - -0.0 389,114 - +3.8 389,152 + +0.5 389,152 + -1.7 389,156 + +0.4 389,156 + +1.8 389,157 - +0.9 389,298 + ABIE40_RS01975 0.21 +0.1 389,298 + ABIE40_RS01975 0.21 +0.3 389,298 + ABIE40_RS01975 0.21 -0.1 389,299 - ABIE40_RS01975 0.21 -0.7 389,299 - ABIE40_RS01975 0.21 +0.2 389,344 + ABIE40_RS01975 0.29 -0.1 389,344 + ABIE40_RS01975 0.29 +2.1 389,344 + ABIE40_RS01975 0.29 -1.0 389,344 + ABIE40_RS01975 0.29 -0.1 389,344 + ABIE40_RS01975 0.29 -0.3 389,344 + ABIE40_RS01975 0.29 -0.6 389,344 + ABIE40_RS01975 0.29 +0.2 389,345 - ABIE40_RS01975 0.30 +1.1 389,345 - ABIE40_RS01975 0.30 -0.6 389,345 - ABIE40_RS01975 0.30 -1.0 389,345 - ABIE40_RS01975 0.30 -0.9 389,345 - ABIE40_RS01975 0.30 +0.5 389,345 - ABIE40_RS01975 0.30 -0.2 389,345 - ABIE40_RS01975 0.30 +1.0 389,345 - ABIE40_RS01975 0.30 +0.8 389,345 - ABIE40_RS01975 0.30 -0.0 389,345 - ABIE40_RS01975 0.30 +1.2 389,345 - ABIE40_RS01975 0.30 +0.1 389,345 - ABIE40_RS01975 0.30 -2.3 389,485 + ABIE40_RS01975 0.56 +1.6 389,486 - ABIE40_RS01975 0.56 +0.8 389,486 - ABIE40_RS01975 0.56 -1.2 389,526 + ABIE40_RS01975 0.63 +1.3 389,526 + ABIE40_RS01975 0.63 -0.6 389,526 + ABIE40_RS01975 0.63 +0.1 389,526 + ABIE40_RS01975 0.63 +1.2 389,526 + ABIE40_RS01975 0.63 -0.6 389,526 + ABIE40_RS01975 0.63 +1.4 389,526 + ABIE40_RS01975 0.63 +1.6 389,526 + ABIE40_RS01975 0.63 -0.7 389,526 + ABIE40_RS01975 0.63 +0.9 389,526 + ABIE40_RS01975 0.63 -0.3 389,526 + ABIE40_RS01975 0.63 +0.2 389,526 + ABIE40_RS01975 0.63 +0.4 389,526 + ABIE40_RS01975 0.63 -0.5 389,527 - ABIE40_RS01975 0.63 -1.2 389,527 - ABIE40_RS01975 0.63 +0.4 389,527 - ABIE40_RS01975 0.63 -0.1 389,527 - ABIE40_RS01975 0.63 -0.3 389,527 - ABIE40_RS01975 0.63 +0.0 389,527 - ABIE40_RS01975 0.63 +0.9 389,527 - ABIE40_RS01975 0.63 -0.6 389,527 - ABIE40_RS01975 0.63 -0.7 389,527 - ABIE40_RS01975 0.63 -0.2 389,527 - ABIE40_RS01975 0.63 -0.1 389,527 - ABIE40_RS01975 0.63 +0.2 389,527 - ABIE40_RS01975 0.63 +0.2 389,527 - ABIE40_RS01975 0.63 +1.2 389,527 - ABIE40_RS01975 0.63 +1.5 389,527 - ABIE40_RS01975 0.63 -1.1 389,599 - ABIE40_RS01975 0.77 +0.2 389,609 - ABIE40_RS01975 0.79 +0.2 389,609 - ABIE40_RS01975 0.79 -0.3 389,609 - ABIE40_RS01975 0.79 -1.4 389,609 - ABIE40_RS01975 0.79 -0.6 389,626 + ABIE40_RS01975 0.82 -0.8 389,626 + ABIE40_RS01975 0.82 -1.2 389,781 + -0.3 389,781 + +0.3 389,781 + +0.1 389,781 + +1.6 389,782 - +0.5 389,782 - +0.2 389,803 - ABIE40_RS01980 0.11 +0.2 389,803 - ABIE40_RS01980 0.11 +0.8 389,904 + ABIE40_RS01980 0.25 +0.5 389,904 + ABIE40_RS01980 0.25 +1.5 389,904 + ABIE40_RS01980 0.25 -0.6 389,905 - ABIE40_RS01980 0.26 +0.9 389,905 - ABIE40_RS01980 0.26 +0.8 389,905 - ABIE40_RS01980 0.26 -0.3 389,905 - ABIE40_RS01980 0.26 +0.1 389,905 - ABIE40_RS01980 0.26 +0.6
Or see this region's nucleotide sequence