Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01940 and ABIE40_RS01945 are separated by 49 nucleotides ABIE40_RS01945 and ABIE40_RS01950 are separated by 101 nucleotides ABIE40_RS01950 and ABIE40_RS01955 are separated by 174 nucleotides
ABIE40_RS01940: ABIE40_RS01940 - LOG family protein, at 382,206 to 383,072
_RS01940
ABIE40_RS01945: ABIE40_RS01945 - calcium-binding protein, at 383,122 to 383,733
_RS01945
ABIE40_RS01950: ABIE40_RS01950 - pyrimidine 5'-nucleotidase, at 383,835 to 384,542
_RS01950
ABIE40_RS01955: ABIE40_RS01955 - magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase, at 384,717 to 386,240
_RS01955
Position (kb) 383
384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 383.055 kb on + strand at 383.055 kb on + strand at 383.055 kb on + strand at 383.055 kb on + strand at 383.055 kb on + strand at 383.071 kb on - strand at 383.123 kb on + strand at 383.124 kb on - strand at 383.145 kb on + strand at 383.145 kb on + strand at 383.145 kb on + strand at 383.433 kb on - strand, within ABIE40_RS01945 at 383.433 kb on - strand, within ABIE40_RS01945 at 383.433 kb on - strand, within ABIE40_RS01945 at 383.715 kb on + strand at 383.715 kb on + strand at 383.716 kb on - strand at 383.716 kb on - strand at 383.716 kb on - strand at 383.716 kb on - strand at 383.716 kb on - strand at 383.729 kb on + strand at 383.729 kb on + strand at 383.729 kb on + strand at 383.729 kb on + strand at 383.729 kb on + strand at 383.730 kb on - strand at 383.733 kb on + strand at 383.774 kb on + strand at 383.801 kb on + strand at 383.801 kb on + strand at 383.802 kb on - strand at 383.802 kb on - strand at 383.802 kb on - strand at 383.802 kb on - strand at 383.802 kb on - strand at 383.811 kb on + strand at 383.812 kb on - strand at 383.812 kb on - strand at 383.812 kb on - strand at 383.812 kb on - strand at 383.832 kb on - strand at 384.067 kb on + strand, within ABIE40_RS01950 at 384.067 kb on + strand, within ABIE40_RS01950 at 384.068 kb on - strand, within ABIE40_RS01950 at 384.068 kb on - strand, within ABIE40_RS01950 at 384.068 kb on - strand, within ABIE40_RS01950 at 384.068 kb on - strand, within ABIE40_RS01950 at 384.068 kb on - strand, within ABIE40_RS01950 at 384.119 kb on + strand, within ABIE40_RS01950 at 384.346 kb on + strand, within ABIE40_RS01950 at 384.347 kb on - strand, within ABIE40_RS01950 at 384.349 kb on + strand, within ABIE40_RS01950 at 384.349 kb on + strand, within ABIE40_RS01950 at 384.349 kb on + strand, within ABIE40_RS01950 at 384.350 kb on - strand, within ABIE40_RS01950 at 384.350 kb on - strand, within ABIE40_RS01950 at 384.350 kb on - strand, within ABIE40_RS01950 at 384.350 kb on - strand, within ABIE40_RS01950 at 384.352 kb on + strand, within ABIE40_RS01950 at 384.353 kb on - strand, within ABIE40_RS01950 at 384.353 kb on - strand, within ABIE40_RS01950 at 384.353 kb on - strand, within ABIE40_RS01950 at 384.353 kb on - strand, within ABIE40_RS01950 at 384.409 kb on + strand, within ABIE40_RS01950 at 384.409 kb on + strand, within ABIE40_RS01950 at 384.409 kb on + strand, within ABIE40_RS01950 at 384.409 kb on + strand, within ABIE40_RS01950 at 384.409 kb on + strand, within ABIE40_RS01950 at 384.410 kb on - strand, within ABIE40_RS01950 at 384.410 kb on - strand, within ABIE40_RS01950 at 384.410 kb on - strand, within ABIE40_RS01950 at 384.410 kb on - strand, within ABIE40_RS01950 at 384.410 kb on - strand, within ABIE40_RS01950 at 384.410 kb on - strand, within ABIE40_RS01950 at 384.410 kb on - strand, within ABIE40_RS01950 at 384.551 kb on + strand at 384.551 kb on + strand at 384.552 kb on - strand at 384.641 kb on + strand at 384.670 kb on + strand at 384.670 kb on + strand at 384.670 kb on + strand at 384.670 kb on + strand at 384.670 kb on + strand at 384.670 kb on + strand at 384.670 kb on + strand at 384.670 kb on + strand at 384.670 kb on + strand at 384.671 kb on - strand at 384.671 kb on - strand at 384.671 kb on - strand at 384.671 kb on - strand at 384.671 kb on - strand at 384.671 kb on - strand at 384.671 kb on - strand at 384.684 kb on + strand at 384.684 kb on + strand at 384.684 kb on + strand at 384.684 kb on + strand at 384.684 kb on + strand at 384.684 kb on + strand at 384.685 kb on - strand at 384.685 kb on - strand at 384.685 kb on - strand at 384.685 kb on - strand at 384.685 kb on - strand at 384.690 kb on + strand at 384.691 kb on - strand at 384.691 kb on - strand at 384.734 kb on - strand at 384.997 kb on + strand, within ABIE40_RS01955 at 384.998 kb on - strand, within ABIE40_RS01955 at 384.998 kb on - strand, within ABIE40_RS01955 at 385.009 kb on - strand, within ABIE40_RS01955 at 385.009 kb on - strand, within ABIE40_RS01955 at 385.029 kb on + strand, within ABIE40_RS01955 at 385.029 kb on + strand, within ABIE40_RS01955 at 385.029 kb on + strand, within ABIE40_RS01955 at 385.030 kb on - strand, within ABIE40_RS01955 at 385.030 kb on - strand, within ABIE40_RS01955 at 385.030 kb on - strand, within ABIE40_RS01955 at 385.030 kb on - strand, within ABIE40_RS01955 at 385.030 kb on - strand, within ABIE40_RS01955 at 385.030 kb on - strand, within ABIE40_RS01955 at 385.266 kb on + strand, within ABIE40_RS01955 at 385.267 kb on - strand, within ABIE40_RS01955 at 385.272 kb on + strand, within ABIE40_RS01955 at 385.272 kb on + strand, within ABIE40_RS01955 at 385.273 kb on - strand, within ABIE40_RS01955 at 385.273 kb on - strand, within ABIE40_RS01955 at 385.273 kb on - strand, within ABIE40_RS01955 at 385.335 kb on + strand, within ABIE40_RS01955 at 385.335 kb on + strand, within ABIE40_RS01955 at 385.335 kb on + strand, within ABIE40_RS01955 at 385.335 kb on + strand, within ABIE40_RS01955 at 385.335 kb on + strand, within ABIE40_RS01955 at 385.336 kb on - strand, within ABIE40_RS01955 at 385.336 kb on - strand, within ABIE40_RS01955 at 385.413 kb on + strand, within ABIE40_RS01955
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 383,055 + +0.6 383,055 + -0.1 383,055 + -0.6 383,055 + -0.3 383,055 + +0.3 383,071 - -0.1 383,123 + -0.8 383,124 - -0.1 383,145 + -1.3 383,145 + -0.8 383,145 + +0.9 383,433 - ABIE40_RS01945 0.51 +1.9 383,433 - ABIE40_RS01945 0.51 +1.0 383,433 - ABIE40_RS01945 0.51 +0.5 383,715 + -0.3 383,715 + +0.2 383,716 - +0.0 383,716 - +0.0 383,716 - +0.5 383,716 - +1.1 383,716 - +2.8 383,729 + -0.1 383,729 + -0.1 383,729 + -0.0 383,729 + -0.5 383,729 + +0.3 383,730 - -1.8 383,733 + +0.2 383,774 + +1.5 383,801 + +0.4 383,801 + -1.1 383,802 - -0.4 383,802 - -0.0 383,802 - -0.0 383,802 - -0.7 383,802 - -0.1 383,811 + -1.4 383,812 - +0.2 383,812 - +0.3 383,812 - -0.8 383,812 - +0.8 383,832 - -0.1 384,067 + ABIE40_RS01950 0.33 -1.0 384,067 + ABIE40_RS01950 0.33 -1.1 384,068 - ABIE40_RS01950 0.33 +0.8 384,068 - ABIE40_RS01950 0.33 +1.0 384,068 - ABIE40_RS01950 0.33 +0.3 384,068 - ABIE40_RS01950 0.33 -0.0 384,068 - ABIE40_RS01950 0.33 -1.9 384,119 + ABIE40_RS01950 0.40 -2.2 384,346 + ABIE40_RS01950 0.72 -0.8 384,347 - ABIE40_RS01950 0.72 +1.4 384,349 + ABIE40_RS01950 0.73 -0.3 384,349 + ABIE40_RS01950 0.73 +0.2 384,349 + ABIE40_RS01950 0.73 -0.8 384,350 - ABIE40_RS01950 0.73 +0.4 384,350 - ABIE40_RS01950 0.73 -0.9 384,350 - ABIE40_RS01950 0.73 -1.4 384,350 - ABIE40_RS01950 0.73 +0.3 384,352 + ABIE40_RS01950 0.73 +0.1 384,353 - ABIE40_RS01950 0.73 -1.2 384,353 - ABIE40_RS01950 0.73 +1.5 384,353 - ABIE40_RS01950 0.73 -1.0 384,353 - ABIE40_RS01950 0.73 +0.0 384,409 + ABIE40_RS01950 0.81 -2.8 384,409 + ABIE40_RS01950 0.81 -0.1 384,409 + ABIE40_RS01950 0.81 +1.5 384,409 + ABIE40_RS01950 0.81 +0.8 384,409 + ABIE40_RS01950 0.81 -1.4 384,410 - ABIE40_RS01950 0.81 -2.4 384,410 - ABIE40_RS01950 0.81 -0.8 384,410 - ABIE40_RS01950 0.81 +1.7 384,410 - ABIE40_RS01950 0.81 -1.0 384,410 - ABIE40_RS01950 0.81 +0.6 384,410 - ABIE40_RS01950 0.81 +0.7 384,410 - ABIE40_RS01950 0.81 -0.3 384,551 + -0.2 384,551 + +0.3 384,552 - -1.2 384,641 + -0.7 384,670 + -0.7 384,670 + +1.2 384,670 + -1.5 384,670 + +0.2 384,670 + -0.1 384,670 + -0.5 384,670 + -0.4 384,670 + +0.5 384,670 + -0.9 384,671 - -0.1 384,671 - +0.2 384,671 - -1.2 384,671 - +0.4 384,671 - +0.5 384,671 - -1.6 384,671 - +0.1 384,684 + +0.4 384,684 + +0.2 384,684 + -1.0 384,684 + -0.6 384,684 + +0.0 384,684 + +0.4 384,685 - -0.2 384,685 - +0.4 384,685 - -0.2 384,685 - -1.1 384,685 - -0.8 384,690 + -1.0 384,691 - -1.6 384,691 - -0.5 384,734 - -1.3 384,997 + ABIE40_RS01955 0.18 +0.1 384,998 - ABIE40_RS01955 0.18 -0.6 384,998 - ABIE40_RS01955 0.18 -0.1 385,009 - ABIE40_RS01955 0.19 -0.2 385,009 - ABIE40_RS01955 0.19 +0.2 385,029 + ABIE40_RS01955 0.20 -1.4 385,029 + ABIE40_RS01955 0.20 -0.7 385,029 + ABIE40_RS01955 0.20 -1.8 385,030 - ABIE40_RS01955 0.21 -0.8 385,030 - ABIE40_RS01955 0.21 -0.6 385,030 - ABIE40_RS01955 0.21 -0.0 385,030 - ABIE40_RS01955 0.21 -2.2 385,030 - ABIE40_RS01955 0.21 -0.7 385,030 - ABIE40_RS01955 0.21 -0.2 385,266 + ABIE40_RS01955 0.36 +0.2 385,267 - ABIE40_RS01955 0.36 +0.0 385,272 + ABIE40_RS01955 0.36 -0.4 385,272 + ABIE40_RS01955 0.36 +0.4 385,273 - ABIE40_RS01955 0.36 +0.2 385,273 - ABIE40_RS01955 0.36 -0.2 385,273 - ABIE40_RS01955 0.36 +0.1 385,335 + ABIE40_RS01955 0.41 +1.3 385,335 + ABIE40_RS01955 0.41 +0.0 385,335 + ABIE40_RS01955 0.41 -1.1 385,335 + ABIE40_RS01955 0.41 +0.6 385,335 + ABIE40_RS01955 0.41 +0.0 385,336 - ABIE40_RS01955 0.41 -0.7 385,336 - ABIE40_RS01955 0.41 -0.6 385,413 + ABIE40_RS01955 0.46 -1.1
Or see this region's nucleotide sequence