Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26520 and ABID97_RS26525 are separated by 125 nucleotides ABID97_RS26525 and ABID97_RS26530 are separated by 254 nucleotides ABID97_RS26530 and ABID97_RS26535 are separated by 10 nucleotides
ABID97_RS26520: ABID97_RS26520 - YciI family protein, at 222,175 to 222,471
_RS26520
ABID97_RS26525: ABID97_RS26525 - hemerythrin domain-containing protein, at 222,597 to 223,154
_RS26525
ABID97_RS26530: ABID97_RS26530 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 223,409 to 226,082
_RS26530
ABID97_RS26535: ABID97_RS26535 - dihydrolipoyllysine-residue acetyltransferase, at 226,093 to 227,694
_RS26535
Position (kb) 223
224
225
226
227 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 222.537 kb on - strand at 222.981 kb on + strand, within ABID97_RS26525 at 222.981 kb on + strand, within ABID97_RS26525 at 222.982 kb on - strand, within ABID97_RS26525 at 222.982 kb on - strand, within ABID97_RS26525 at 222.982 kb on - strand, within ABID97_RS26525 at 222.982 kb on - strand, within ABID97_RS26525 at 223.022 kb on + strand, within ABID97_RS26525 at 223.350 kb on + strand at 223.550 kb on + strand at 223.550 kb on + strand at 223.577 kb on + strand at 223.751 kb on + strand, within ABID97_RS26530 at 223.844 kb on + strand, within ABID97_RS26530 at 223.844 kb on + strand, within ABID97_RS26530 at 224.009 kb on + strand, within ABID97_RS26530 at 224.010 kb on - strand, within ABID97_RS26530 at 224.366 kb on + strand, within ABID97_RS26530 at 224.423 kb on + strand, within ABID97_RS26530 at 224.519 kb on + strand, within ABID97_RS26530 at 224.751 kb on - strand, within ABID97_RS26530 at 224.751 kb on - strand, within ABID97_RS26530 at 225.067 kb on - strand, within ABID97_RS26530 at 225.067 kb on - strand, within ABID97_RS26530 at 225.067 kb on - strand, within ABID97_RS26530 at 225.067 kb on - strand, within ABID97_RS26530 at 225.190 kb on - strand, within ABID97_RS26530 at 225.196 kb on - strand, within ABID97_RS26530 at 225.198 kb on + strand, within ABID97_RS26530 at 225.375 kb on + strand, within ABID97_RS26530 at 225.435 kb on + strand, within ABID97_RS26530 at 225.459 kb on + strand, within ABID97_RS26530 at 225.462 kb on + strand, within ABID97_RS26530 at 225.463 kb on - strand, within ABID97_RS26530 at 225.463 kb on - strand, within ABID97_RS26530
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 222,537 - +1.1 222,981 + ABID97_RS26525 0.69 +0.4 222,981 + ABID97_RS26525 0.69 +0.1 222,982 - ABID97_RS26525 0.69 -0.3 222,982 - ABID97_RS26525 0.69 -0.5 222,982 - ABID97_RS26525 0.69 +0.0 222,982 - ABID97_RS26525 0.69 +0.5 223,022 + ABID97_RS26525 0.76 -0.3 223,350 + +0.7 223,550 + -1.9 223,550 + -2.7 223,577 + -1.9 223,751 + ABID97_RS26530 0.13 -2.5 223,844 + ABID97_RS26530 0.16 -1.4 223,844 + ABID97_RS26530 0.16 -0.7 224,009 + ABID97_RS26530 0.22 +0.6 224,010 - ABID97_RS26530 0.22 -2.0 224,366 + ABID97_RS26530 0.36 -2.4 224,423 + ABID97_RS26530 0.38 -1.9 224,519 + ABID97_RS26530 0.42 -2.1 224,751 - ABID97_RS26530 0.50 -2.6 224,751 - ABID97_RS26530 0.50 -1.3 225,067 - ABID97_RS26530 0.62 -2.3 225,067 - ABID97_RS26530 0.62 -2.4 225,067 - ABID97_RS26530 0.62 -2.6 225,067 - ABID97_RS26530 0.62 -3.3 225,190 - ABID97_RS26530 0.67 -3.5 225,196 - ABID97_RS26530 0.67 -3.5 225,198 + ABID97_RS26530 0.67 -1.6 225,375 + ABID97_RS26530 0.74 -1.0 225,435 + ABID97_RS26530 0.76 -1.6 225,459 + ABID97_RS26530 0.77 -0.7 225,462 + ABID97_RS26530 0.77 -1.8 225,463 - ABID97_RS26530 0.77 -2.7 225,463 - ABID97_RS26530 0.77 -2.4
Or see this region's nucleotide sequence